BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21910.1
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472427 jgi|Araly1|472427|fgenesh2_kg.1__2381__AT1G21910.1 1480 0.0
Ahg476928 jgi|Araly1|476928|fgenesh2_kg.2__2058__AT1G77640.1 283 2e-75
> Ahg472427 jgi|Araly1|472427|fgenesh2_kg.1__2381__AT1G21910.1
Length=1089
Score = 1480 bits (801), Expect = 0.0
Identities = 996/1083 (92%), Gaps = 41/1083 (4%)
Strand=Plus/Plus
Query 23 ACAACAACAACAAAAACTCAAGAACAATATCTCCACTTGATC-ACTACCACATTGTCCAA 81
|||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||| |
Sbjct 29 ACAACAACAACAAAAACTCAAGAACAATCTCTTCACTTGATCAAC-ACCACATTGTCCTA 87
Query 82 TCA--CTCTACAAAGCCTGTACGTACACAACAA--CATTACCATGGTGAAACAAGAACGC 137
||| || ||||||||| | | | ||||||| |||||||||||||||||||||||||
Sbjct 88 TCATTCTATACAAAGCC--T-C-CATACAACAAGTCATTACCATGGTGAAACAAGAACGC 143
Query 138 AAGATCCAAACCAGCAGCACAAAAAAGGAAATGCCTTTGTCATCATCACCAtcttcttct 197
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 AAGATCCAAACCA--A-CACAAAAAAGGAAATGCCTTTGTCATCATCACCATCTTCTTCT 200
Query 198 tcttcttcatcttcttcctcgtcttcgtcttcGTGTAAGAACAAGAACAAGAAGAGTAAG 257
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCATCTTCATCTTCTTCCTCGTCTTCGTCTTCGTGTAAGAACAAGAACAAGAAGAGTAAG 260
Query 258 ATTAAGAAGTACAAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGTCTCTGAGATTAGG 317
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 261 ATTAAGAAGTACAAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGTTTCTGAGATTAGG 320
Query 318 GCACCAAATCAAAAGACAAGGATTTGGTTAGGTTCTTACTCAACAGCTGAAGCAGCTGCT 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GCACCAAATCAAAAGACAAGGATTTGGTTAGGTTCTTACTCAACAGCTGAAGCAGCTGCT 380
Query 378 AGAGCTTACGATGTTGCACTCTTATGTCTCAAAGGCCCTCAAGCCAATCTCAACTTCCCT 437
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 381 AGGGCTTACGATGTTGCACTCTTGTGTCTCAAAGGTCCTCAAGCCAATCTCAACTTCCCT 440
Query 438 ACTTCTTCTTCTTC-TCATCATCTTCTTGATAATCTCTTAGATGAAAATACCCTTTTGTC 496
|||||||||||| | |||||||||||||||| |||||||||||||||| ||| |||| ||
Sbjct 441 ACTTCTTCTTCT-CATCATCATCTTCTTGATGATCTCTTAGATGAAAAGACCATTTTATC 499
Query 497 CCCCAAATCCATCCAAAGAGTAGCTGCTCAAGCTGCCAACTCATTTAACCATTTTGCCCC 556
||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||
Sbjct 500 CCCCAAATCCATCCAAAGAGTAGCTGCTCAAGCTGCCAATTCACTTGACCTTTTTGCCCC 559
Query 557 TACTTCATCAGCCGTCTCGTCACCGTCCGATCATGATCATCACCATGATGATGGGATGCA 616
| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 560 TTCTTCATCAGCCGTCTCGTCACCGTCCGATCATGATCAGCATCATGATGATGGGATGCA 619
Query 617 ATCTTTGATGGGATCTTTTGTGGACAATCATGTGTCTTTGATGGATTCAACATCTTCATG 676
||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||
Sbjct 620 ATCTTTGATGGGATCTTTTGTGGACAATCATGTGTCTTTGATGAATCCATCATCATCATG 679
Query 677 GTATGATGATCATAATGGGATGTTCTTGTTTGATAATGGAGCTCCATTCAATTACTCTCC 736
|||||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||
Sbjct 680 GTATGATGATCATAATGGAATGTTCTTGTTCGATGATGGAGCTCCGTTTAATTACTCTCC 739
Query 737 TCAACTAAACTCGACGACGATGCTCGATGAATACTTCTACGAAGATGCTGACATTCCGCT 796
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 740 TCAATTAAACTCGACGACGATGCTCGATGAGTACTTCTACGAAGATGCTGACATTCCGCT 799
Query 797 TTGGAGTTTCAATTAATCCGACGGTCCATAATACATACTTTAATTAGTTTTCTAAATCAT 856
|||||||||||||| ||||||||||||||||||||| || ||||||||||| | |||
Sbjct 800 TTGGAGTTTCAATTGATCCGACGGTCCATAATACATGCTCTAATTAGTTTT-T----CAT 854
Query 857 TTTTTAAATTCTTTTTTATATATGTAACAT-ATATTTACCCTCGTCGTAATTATTCATTT 915
||||||| ||||||| |||||||| | || | ||| ||||||||||||||| || |||
Sbjct 855 TTTTTAA-TTCTTTT--ATATATGTTA-ATTAAATT-ACCCTCGTCGTAATTCTTT-TTT 908
Query 916 CC-AAGTTGTTTGTTGCTTGGAGAGAATTGACGACGGATACGA--T-TATA-TA-A-TAT 968
|| |||||||||||||||||||||||||||||||||||||||| | |||| || | |||
Sbjct 909 CCCAAGTTGTTTGTTGCTTGGAGAGAATTGACGACGGATACGAAATATATAATATACTAT 968
Query 969 AATTGTAAGTTTTTATATGTAGCAA-ACTCGGTACAATT----CGGATTTAATAGGGATC 1023
|||| ||| ||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 969 AATTC-AAGGTTTTATATGTAGCAATACTCGATACAATTAATTCGGATTTAATAGGGATC 1027
Query 1024 TAGGAAGTTCACATGAACAAGCGACTcttttttttgtcacttctttgactttttcatgtg 1083
||||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||
Sbjct 1028 TAGGAAGTTCACATGAACAAGAGACT-TTTTTATTGTCATTTCTTTGACTTTTTCATGTG 1086
Query 1084 agg 1086
|||
Sbjct 1087 AGG 1089
> Ahg476928 jgi|Araly1|476928|fgenesh2_kg.2__2058__AT1G77640.1
Length=877
Score = 283 bits (153), Expect = 2e-75
Identities = 248/291 (85%), Gaps = 17/291 (6%)
Strand=Plus/Plus
Query 255 AAGATTAAGAAGTACAAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGTCT-CTGAGAT 313
||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 163 AAGATAAAGAAGTACAAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGT-TACTGAAAT 221
Query 314 TAGGGCACCAAATCAAAAGACAAGGATTTGGTTAGGTTCTTACTCAACAGCTGAAGCAGC 373
|||||||||||| ||||||||||| || ||||||||||||||||| || || ||||||||
Sbjct 222 TAGGGCACCAAACCAAAAGACAAGAATCTGGTTAGGTTCTTACTCTACCGCAGAAGCAGC 281
Query 374 TGCTAGAGCTTACGATGTTGCACTCTTATGTCTCAAAGGCCCTCAAGCCAATCTCAACTT 433
|||||| |||||||||| ||| ||||| |||||||| || ||| |||| |||||||||||
Sbjct 282 TGCTAGGGCTTACGATGCTGCTCTCTTGTGTCTCAAGGGACCTAAAGCTAATCTCAACTT 341
Query 434 CCCTA-CTTCTTCT-T-CTTCTCATCATCTTCTTGAT-AATC-TCTTAGATGAAAATACC 488
||||| | || | | |||||| | | ||||| || || | || |||||||| |||
Sbjct 342 CCCTAACATCACCACTACTTCTCCT--T-TTCTT-ATGAA-CATC---GATGAAAAGACC 393
Query 489 CTTTTGTCCCCCAAATCCATCCAAAGAG-TAGCTGCTCAAGCTGCCAACTC 538
||||||||||||||||||||||||| || | || |||||||| || |||||
Sbjct 394 CTTTTGTCCCCCAAATCCATCCAAA-AGGTCGCCGCTCAAGCCGCTAACTC 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5