BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21920.1
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472428 jgi|Araly1|472428|fgenesh2_kg.1__2382__AT1G21920.1 2161 0.0
Ahg335432 jgi|Araly1|335432|fgenesh1_pg.C_scaffold_1001997 1140 0.0
Ahg922801 jgi|Araly1|922801|scaffold_104082.1 363 3e-99
> Ahg472428 jgi|Araly1|472428|fgenesh2_kg.1__2382__AT1G21920.1
Length=1456
Score = 2161 bits (1170), Expect = 0.0
Identities = 1370/1463 (94%), Gaps = 27/1463 (2%)
Strand=Plus/Plus
Query 270 AAGAAATGGAAAAACAGGCGAAGCTAACGAGGACACAGTCGTCGTTACTCCGGTCATCGT 329
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAGAAATGGAAAAACAGGCGAAGCTAACGAGGACACAGTCGTCGTTGCTCCGGTCATCGT 60
Query 330 CGAATCTCCGTTCGTCATATCAAAGCTTATCTTCAATCGTCGAAGGCGAGCAAGATCTAG 389
||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CGAATCTTCGTTCGTCATTTCAAAGCTTATCTTCAATCGTCGAAGGCGAACAAGATCTAG 120
Query 390 AAGCCGgagagaaagaagagaaacagagaagaaaaCCACCTAAACCATTCGGTTCACCAA 449
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AAGCCGGAGAGAAAGAAGAGAAACAGAGAAGAAAACCACCTAAACCATTCGGTTCATCAA 180
Query 450 ATCCTAAAACCGGTTTAAC-CAGAATCAATCCCGGTTTAGCTTTCACAATGGTAtctctc 508
||||||| |||||||||| | | || || ||||||||||| ||||||||||| ||||||
Sbjct 181 GTCCTAAATCCGGTTTAACTC-GGATTAACCCCGGTTTAGCATTCACAATGGTGTCTCTC 239
Query 509 tctttcctaagtctctcatcgttcttcttcttcgtcgtcttctcACAAACCGATGAGATT 568
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTTTCCTCAGTCTCTCATCGTTCTTCTTCTTCGTCGTCTTCTCACAAACCGATGAGATT 299
Query 569 CTCACATCGGAGAATCTTTTACTAGCTTTAATCTTCGTCGCTGTAGCTCTCTTCTTCGCT 628
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 CTCACATCGGAAAATCTTTTACTAGCTTTAATCTTCGTCGCCGTAGCTCTCTTCTTCGCC 359
Query 629 TCCAAGAACATCTCTCTACTAAACCAAACCGTAATCGCAATCAAAAACTTAGGGTTCCAA 688
|||||||||||| |||| || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 360 TCCAAGAACATCGCTCTTCTTAACCAAACCGTAATCGCAATCAAAAACTTCGGGTTTCAA 419
Query 689 AACAGAGACTCGAAATCAAAACCGGTACAATGGTACATCGGAGACGATTCAAAACCGGAG 748
| |||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 420 AGCAGAAACTCAAAATCAAAACCGGTACAATGGTACATCGGAGACGATACTAAACCGGAG 479
Query 749 AAGAAGGTAATCAAGAGATTCGTTAAAGAAGGAGTTCAATTCTACAGTAATGGAGATTTC 808
|||||| | || ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAGAAGATCATAAAGCGGTTCGTTAAAGAAGGAGTTCAATTCTACAGTAATGGAGATTTC 539
Query 809 TACGAAGGTGAATTTAACAAAGGGAAGTGTAACGGAAGTGGTGTGTATTACTATTTCGTG 868
||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 540 TACGAAGGTGAATTTCACAAAGGGAAGTGTAACGGAAGTGGAGTTTATTACTATTTCGTG 599
Query 869 AGAGGACGTTATGAAGGAGATTGGCTAGATGGGAGATATGATGGTCATGGGATTGAGAGT 928
|||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 AGAGGAAGATATGAAGGAGATTGGATAGATGGGAGATATGATGGTCATGGGATTGAGAGT 659
Query 929 TGGGCTAGAGGAAGTAGATATAAAGGTCAATATAGGCAAGGTCTTAGACATGGTTTTGGT 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 TGGGCTAGAGGAAGTAGATATAAAGGTCAATATAGGCAAGGTCTTAGACATGGTTATGGA 719
Query 989 GTTTATAGATTCTACACTGGTGATTGTTATGCTGGTGAGTGGTTTAATGGTCAAAGCCAT 1048
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 GTTTATAGATTCTACACTGGTGATTGTTATGCTGGTGAATGGTTTAATGGTCAAAGCCAT 779
Query 1049 GGTTTTGGTGTTCAATCTTGTTCTGATGGTAGCTCTTACCTTGGTGAGTCTAGATTTGGT 1108
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 780 GGTTTTGGTGTTCAATCTTGTGCTGATGGTAGCTCTTATGTTGGTGAGTCTAGATTTGGT 839
Query 1109 GTTAAGCATGGTCTTGGTTCTTACCATTTCAGAAATGGAGATAAGTATGCAGGAGAGTAC 1168
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTTAAACATGGTCTTGGTTCTTACCATTTCAGAAATGGAGATAAGTATGCAGGAGAGTAT 899
Query 1169 TTTGGAGACAAGATTCATGGGTTTGGTGTGTATCGATTTGCTAATGGACACTGTTATGAA 1228
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 900 TTTGGAGACAAGATTCATGGGTTTGGTGTGTATCGATTTGCTAATGGTCATTGTTATGAA 959
Query 1229 GGAGCATGGCATGAAGGTCGTAAGCAAGGGTTTGGTGCTTACTCGTTTAGAAATGGTGAT 1288
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 960 GGAGCATGGCATGAAGGTCGTAAGCAAGGGTTTGGTGCTTACTCGTTTAGAACTGGTGAT 1019
Query 1289 GCTAAATCTGGTGAATGGGATTCAGGGGTTCTTGTGACTTCACTTCCTCTTACGAGTGAG 1348
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1020 GCTAAATCTGGTGAATGGGATTCAGGGAAGCTTGTAACTTCTCTTCCTCTTACGAGTGAG 1079
Query 1349 CCAGTTTCAAGAGCTGTTCAGGCGGCTCGAGAAACAGCGAATAAGGCAGTGAATCGGAGA 1408
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1080 CCAGTTTCAAGAGCGGTTCAGGCGGCTCGAGAAACAGCGAACAAGGCAGTGAATCGGAGA 1139
Query 1409 CGAGTAGATGAGCAGGTGAGCCGAGCTGTGGCTGCAGCTAATAAGGCTGCTACGGCTGCA 1468
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 CGAGTAGATGAGCAGGTGAGCCGAGCCGTGGCTGCAGCTAATAAGGCTGCTACGGCTGCA 1199
Query 1469 AGAGTGGCTGCTGTGAGAGCCGTTCAGAATCAAATGGATGGTAAATTTTGTCAAAGTTGa 1528
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGAGTGGCTGCTGTGAGAGCTGTTCAGAATCAAATGGATGGTAAATTTTGTCAAAGTTGA 1259
Query 1529 aaaaaggaaaat-gtaaaaaaTCtttttttttACCGGT-TTCTCTGTAACCCTGAATC-G 1585
||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||| | |
Sbjct 1260 AAAAA--AAAATTGTAAAAA-TCTTTTTTTTTACCGGTCTTCTCTGTAACCCTGATTGAG 1316
Query 1586 --AAA------G-T---TTGTTTCAGAGGTTTGTAACAGAGAGTTAATTTTCGATCTTTT 1633
||| | | ||||||||||||||||| |||||||| ||||||| |||||||
Sbjct 1317 CTAAAAAAAATGGTAGCTTGTTTCAGAGGTTTGTGGCAGAGAGT-AATTTTCTATCTTTT 1375
Query 1634 TACTAATGTAACAAAACTGTAAATAGTTGAAGAAGAAGCT-TTGTT--TTT-GTTGTAAA 1689
||||||||||||||| ||||||||||||||||||| | | || || ||| ||||||||
Sbjct 1376 TACTAATGTAACAAA-CTGTAAATAGTTGAAGAAGCTGGTGTTTTTACTTTTGTTGTAAA 1434
Query 1690 ATCAACGGCTTGAAATGGAGCTT 1712
||||||||||||||||||||||
Sbjct 1435 -TCAACGGCTTGAAATGGAGCTT 1456
> Ahg335432 jgi|Araly1|335432|fgenesh1_pg.C_scaffold_1001997
Length=1029
Score = 1140 bits (617), Expect = 0.0
Identities = 671/698 (96%), Gaps = 0/698 (0%)
Strand=Plus/Plus
Query 831 GGAAGTGTAACGGAAGTGGTGTGTATTACTATTTCGTGAGAGGACGTTATGAAGGAGATT 890
|||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 332 GGAAGTGTAATGGAAGTGGTGTGTATTACTATTTCGTGAGAGGAAGATATGAAGGAGATT 391
Query 891 GGCTAGATGGGAGATATGATGGTCATGGGATTGAGAGTTGGGCTAGAGGAAGTAGATATA 950
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GGATAGATGGGAGATATGATGGTCATGGGATTGAGAGTTGGGCTAGAGGAAGTAGATATA 451
Query 951 AAGGTCAATATAGGCAAGGTCTTAGACATGGTTTTGGTGTTTATAGATTCTACACTGGTG 1010
||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 452 AAGGTCAATATAGACAAGGTCTTAGACATGGTAATGGAGTTTATAGATTCTACACTGGTG 511
Query 1011 ATTGTTATGCTGGTGAGTGGTTTAATGGTCAAAGCCATGGTTTTGGTGTTCAATCTTGTT 1070
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 512 ATTGTTATGCTGGTGAATGGTTTAATGGTCAAAGCCATGGTTTTGGTGGTCAATCTTGTG 571
Query 1071 CTGATGGTAGCTCTTACCTTGGTGAGTCTAGATTTGGTGTTAAGCATGGTCTTGGTTCTT 1130
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 572 CTGATGGTAGCTCTTATGTTGGTGAGTCTAGATTTGGTGTTAAACATGGTCTTGGTTCTT 631
Query 1131 ACCATTTCAGAAATGGAGATAAGTATGCAGGAGAGTACTTTGGAGACAAGATTCATGGGT 1190
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 632 ACCATTTCAGAAATGGAGATAAGTATGCAGGAGAGTATTTTGGAGACAAGATTCATGGGT 691
Query 1191 TTGGTGTGTATCGATTTGCTAATGGACACTGTTATGAAGGAGCATGGCATGAAGGTCGTA 1250
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 692 TTGGTGTGTATCGATTTGCTAATGGTCATTGTTATGAAGGAGCATGGCATGAAGGTCGTA 751
Query 1251 AGCAAGGGTTTGGTGCTTACTCGTTTAGAAATGGTGATGCTAAATCTGGTGAATGGGATT 1310
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 752 AGCAAGGGTTTGGTGCTTACTCGTTTAGAACTGGTGATGCTAAATCTGGTGAATGGGATT 811
Query 1311 CAGGGGTTCTTGTGACTTCACTTCCTCTTACGAGTGAGCCAGTTTCAAGAGCTGTTCAGG 1370
| ||| ||||| ||||| ||||||||| |||||||||||||||||||||| |||||||
Sbjct 812 CTGGGAAGCTTGTAACTTCTCTTCCTCTTGCGAGTGAGCCAGTTTCAAGAGCGGTTCAGG 871
Query 1371 CGGCTCGAGAAACAGCGAATAAGGCAGTGAATCGGAGACGAGTAGATGAGCAGGTGAGCC 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CGGCTCGAGAAACAGCGAATAAGGCAGTGAATCGGAGACGAGTAGATGAGCAGGTGAGCC 931
Query 1431 GAGCTGTGGCTGCAGCTAATAAGGCTGCTACGGCTGCAAGAGTGGCTGCTGTGAGAGCCG 1490
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 GAGCCGTGGCTGCAGCTAATAAGGCTGCTACGGCTGCAAGAGTGGCTGCTGTGAGAGCCG 991
Query 1491 TTCAGAATCAAATGGATGGTAAATTTTGTCAAAGTTGa 1528
||||||||||||||||||||||||||||||||||||||
Sbjct 992 TTCAGAATCAAATGGATGGTAAATTTTGTCAAAGTTGA 1029
Score = 339 bits (183), Expect = 6e-92
Identities = 212/226 (94%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 275 ATGGAAAAACAGGCGAAGCTAACGAGGACACAGTCGTCGTTACTCCGGTCATCGTCGAAT 334
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAAAAACAGGCGAAGCTAACGAGGACACAGTCGTCGTTGCTCCGGTCATCGTCGAAT 60
Query 335 CTCCGTTCGTCATATCAAAGCTTATCTTCAATCGTCGAAGGCGAGCAAGATCTAGAAGCC 394
|| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CTTCGTTCGTCATTTCAAAGCTTATCTTCAATCGTCGAAGGCGAACAAGATCTAGAAGCC 120
Query 395 GgagagaaagaagagaaacagagaagaaaaCCACCTAAACCATTCGGTTCACCAAATCCT 454
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 121 GGAGAGAAAGAAGAGAAGCAGAGAAGAAAACCACCTAAACCATTCGGTTCATCAAGTCCT 180
Query 455 AAAACCGGTTTAAC-CAGAATCAATCCCGGTTTAGCTTTCACAATG 499
||| |||||||||| | || | || ||||||||||| |||||||||
Sbjct 181 AAATCCGGTTTAACTCGGATT-AACCCCGGTTTAGCATTCACAATG 225
Score = 145 bits (78), Expect = 1e-33
Identities = 96/105 (91%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 691 CAGAGACTCGAAATCAAAACCGGTACAATGGTACATCGGAGACGATTCAAAACCGGAGAA 750
|||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 228 CAGAAACTCAAAATCAAAACCGGTACAATGGTACATCGGAGACGATACTAAACCGGAGAA 287
Query 751 GAAGGTAATCAAGAGATTCGTTAAAGAAGGAGTTCAATTCTACAG 795
|||| | || ||| | |||||||||||||||||||||||||||||
Sbjct 288 GAAGATCATAAAGCGGTTCGTTAAAGAAGGAGTTCAATTCTACAG 332
> Ahg922801 jgi|Araly1|922801|scaffold_104082.1
Length=1259
Score = 363 bits (196), Expect = 3e-99
Identities = 486/622 (78%), Gaps = 36/622 (6%)
Strand=Plus/Plus
Query 703 ATCAAAACCGGTACAATGGTACATCGGAGACGATTCAA-AACCGGAGAAGAAGGTA-ATC 760
|||||| ||||| ||||||| |||| | | ||| |||| |||| | | || | |||
Sbjct 395 ATCAAAGCCGGTTCAATGGTTCATC-G-G-CGAATCAAGAACC---G-A-AACCCACATC 446
Query 761 AAGAGATTCGTTAAAGAAGGAGTTCAAT-TCTACAGTAATGGAGATTTCTACGAAGGTGA 819
|||| | || || |||| |||| | | | |||| |||| | |||||||||||||| ||
Sbjct 447 AAGAAACTCCCTAGAGAAACAGTTGAGTAT-TACAATAATAGCGATTTCTACGAAGGAGA 505
Query 820 ATTTAACAAAGGGAAGTGTAACGGAAGTGGTGTGTATTACTATTTCGTGAGAGG-ACGTT 878
||| ||||||| |||||||| |||||||| | || || || ||| ||| ||| | |
Sbjct 506 GTTTCACAAAGGTAAGTGTAATGGAAGTGGAATTTACTATTACTTCATGAAAGGTA-AAT 564
Query 879 ATGAAGGAGATTGGCTAGATGGGAGATATGAT-GGTCATGGGATTGAGAGTTGGGCTAGA 937
||||||| |||||| | ||||| ||||| ||| ||| ||||||||||||||||||||||
Sbjct 565 ATGAAGGTGATTGGATTGATGGAAGATACGATGGGT-TTGGGATTGAGAGTTGGGCTAGA 623
Query 938 GGAAGTA-GATATAAAGGTCAATATAGGCAAGG-TCTTAGACATGGTTTTGGTGTTTATA 995
||||||| | || ||||| ||||||| ||||| || |||||||| ||||||||| |
Sbjct 624 GGAAGTAAG-TACAAAGGACAATATAAACAAGGATCA-AGACATGGACATGGTGTTTACA 681
Query 996 GATTCTACACTGGTGATTGTTATGCTGGTGAGTGGTTTAATGGTCAAAGCCATGGTTTTG 1055
| || |||||||| |||| |||| |||| || |||| ||| || || || |||||| |||
Sbjct 682 GGTTTTACACTGGAGATTCTTATTCTGGAGAATGGTGTAACGGACAGAGTCATGGTGTTG 741
Query 1056 GTGTTCA-ATCTTGTTCTGATGGTAGCTCTTACCTTGGTGAGT-CTAGATTTGGTGTTAA 1113
||||||| | | ||| |||||||||||| |||| |||| |||| | | ||||||||| ||
Sbjct 742 GTGTTCAGA-CATGTGCTGATGGTAGCTGTTACGTTGGAGAGTTCAA-ATTTGGTGTCAA 799
Query 1114 GCATGGTCTTGGTTC-TTACCATTTCAGAAATGGAGATAAGTATGCAGGAGAGTACTTTG 1172
||||| ||||| | ||||||||| ||||||||||||| |||| | || ||||| ||||
Sbjct 800 ACATGGCCTTGGC-CGTTACCATTTTAGAAATGGAGATACGTATTCGGGTGAGTATTTTG 858
Query 1173 GAGACAAGATTCATGGGTTTGGTGTGTATCGA-TTTGCTAATGGACACTGTTATGAAGGA 1231
||||||| || || || ||||| || || | | ||||| |||||||| ||||| |||||
Sbjct 859 GAGACAAAATGCACGGTTTTGGAGTCTACC-ACTTTGCGAATGGACATTGTTACGAAGGG 917
Query 1232 GCATGGCATGAAGGTCGTAAGCAAGGGTTTGG--TGCT-TACTCGTTTAGAAATGGTGAT 1288
|| ||||| || |||||||| ||||| | ||| || | ||| ||||| ||| ||| |
Sbjct 918 GCTTGGCACGAGGGTCGTAAACAAGGCTATGGAATG-TATACA--TTTAGGAATAGTG-T 973
Query 1289 G-CTAAATCTGGTGAATGGGAT 1309
|||||| |||||||||||||
Sbjct 974 CACTAAATGTGGTGAATGGGAT 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64791506745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5