BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21925.1
Length=303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921193 jgi|Araly1|921193|scaffold_102474.1 318 1e-86
Ahg921191 jgi|Araly1|921191|scaffold_102472.1 307 3e-83
Ahg921179 jgi|Araly1|921179|scaffold_102460.1 296 6e-80
Ahg921192 jgi|Araly1|921192|scaffold_102473.1 174 3e-43
> Ahg921193 jgi|Araly1|921193|scaffold_102474.1
Length=328
Score = 318 bits (172), Expect = 1e-86
Identities = 216/237 (91%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGCTCAAAGTTTGAAGAAAACATGCGATCTTCTGATCATTACAACTTTGCTCGCA 60
|||||||||||||||||||||||||||||| |||||||||| ||||| |||| || ||
Sbjct 21 ATGGCAGCTCAAAGTTTGAAGAAAACATGCAATCTTCTGATTGTTACAGCTTTAATCACA 80
Query 61 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAAATATGTGTATTAAACATTGT 120
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 81 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAGATATGTGTATCAAACATTGT 140
Query 121 GTCTCAAACCAATGCTTGAAAGAAGTTAAAAACGCTACTCCTATAATGTGCGAGGATGCT 180
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 141 GTCTCAAACCAATGTTTGAAAGAAGTTAAAAACGCTACTCCTACAATGTGCGAGGATGCT 200
Query 181 TGCAAAAAACTTTGCACTGAACAACAACAAAGTGGTCAAGAAAGATACCTTTTGCCT 237
|||||||||||||||| ||| | |||| || |||| |||||| |||| || |||||
Sbjct 201 TGCAAAAAACTTTGCAATGACCTACAA-AA--TGGTAAAGAAAAATACATTGTGCCT 254
> Ahg921191 jgi|Araly1|921191|scaffold_102472.1
Length=328
Score = 307 bits (166), Expect = 3e-83
Identities = 214/237 (90%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGCTCAAAGTTTGAAGAAAACATGCGATCTTCTGATCATTACAACTTTGCTCGCA 60
|||||||||||||||||||||||||||||| ||||| |||| ||||| |||| || ||
Sbjct 21 ATGGCAGCTCAAAGTTTGAAGAAAACATGCAATCTTTTGATTGTTACAGCTTTAATCACA 80
Query 61 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAAATATGTGTATTAAACATTGT 120
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 81 ATGATGTTTTCAGCACAAATCTCACATTCGAATAATGTAGATATGTGTATCAAACATTGT 140
Query 121 GTCTCAAACCAATGCTTGAAAGAAGTTAAAAACGCTACTCCTATAATGTGCGAGGATGCT 180
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 141 GTCTCAAACCAATGTTTGAAAGAAGTTAAAAACGCTACTCCTACAATGTGCGAGGATGCT 200
Query 181 TGCAAAAAACTTTGCACTGAACAACAACAAAGTGGTCAAGAAAGATACCTTTTGCCT 237
|||||||||||||||| ||| | |||| || |||| |||||| |||| || |||||
Sbjct 201 TGCAAAAAACTTTGCAATGACCTACAA-AA--TGGTAAAGAAAAATACATTGTGCCT 254
> Ahg921179 jgi|Araly1|921179|scaffold_102460.1
Length=328
Score = 296 bits (160), Expect = 6e-80
Identities = 212/237 (89%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGCTCAAAGTTTGAAGAAAACATGCGATCTTCTGATCATTACAACTTTGCTCGCA 60
||||||||||| |||||||||||||||||| |||||||||| ||||| |||| || ||
Sbjct 21 ATGGCAGCTCAGAGTTTGAAGAAAACATGCAATCTTCTGATTGTTACAGCTTTAATCACA 80
Query 61 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAAATATGTGTATTAAACATTGT 120
|||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 81 ATGATGTTTTCGGCACAAATATCACATTCGAATAATGTAGATATGTGTATCAAACATTGT 140
Query 121 GTCTCAAACCAATGCTTGAAAGAAGTTAAAAACGCTACTCCTATAATGTGCGAGGATGCT 180
|||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 141 GTCTCAAACCAATGTTTGAAAGAAGTTAAAAACGCTACTTCTACAATATGCGAGGATGCT 200
Query 181 TGCAAAAAACTTTGCACTGAACAACAACAAAGTGGTCAAGAAAGATACCTTTTGCCT 237
|||||||||||||||| ||| | |||| || |||| |||||| |||| || |||||
Sbjct 201 TGCAAAAAACTTTGCAATGATCTACAA-AA--TGGTAAAGAAAAATACATTGTGCCT 254
> Ahg921192 jgi|Araly1|921192|scaffold_102473.1
Length=322
Score = 174 bits (94), Expect = 3e-43
Identities = 165/197 (84%), Gaps = 13/197 (7%)
Strand=Plus/Plus
Query 1 ATGGCAGCTCAAAGTTTGAAGAAAACATGCGATCTTCTGATCATTACAACTTTGCTCGCA 60
|||||||||||||||||||||||||||||| |||||||||| ||||| |||| || ||
Sbjct 21 ATGGCAGCTCAAAGTTTGAAGAAAACATGCAATCTTCTGATTGTTACAGCTTTAATCACA 80
Query 61 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAAATATGTGTATTAA----ACA 116
||||||||||||||||||||||||||||||||||||||| |||||||||| || | |
Sbjct 81 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAGATATGTGTATCAATTTGAAA 140
Query 117 TTGTGTCTCAAACCAATGCT-TGAAAGAAGTTAAAAACGCTACTCCTAT-A-ATGTGC-G 172
| ||||| ||||||| || | |||||| || ||||||| |||||| | | ||||| |
Sbjct 141 T-GTGTCCCAAACCAGTG-TATGAAAGTGGTAAAAAACGGGACTCCTGTCATATGTGAAG 198
Query 173 AGGATGCTTGCAAAAAA 189
|| ||| | ||||||||
Sbjct 199 AG-ATG-T-GCAAAAAA 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10645409331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5