BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21930.1
Length=532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472429 jgi|Araly1|472429|fgenesh2_kg.1__2383__AT1G21930.1 603 5e-172
Ahg912042 jgi|Araly1|912042|Al_scaffold_0001_2296 473 4e-133
> Ahg472429 jgi|Araly1|472429|fgenesh2_kg.1__2383__AT1G21930.1
Length=388
Score = 603 bits (326), Expect = 5e-172
Identities = 371/392 (95%), Gaps = 6/392 (2%)
Strand=Plus/Plus
Query 79 GACTGATCAAAGATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCC 138
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2 GACTGATCAAAGATGGGAAGTCAGGAGAGTGTGAAACACCTCGAGGAATGCACTGTTTCC 61
Query 139 AATGCATTAGGGACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGC 198
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AATGCATTAGGAACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGC 121
Query 199 ATCAAACGCAAGTCTCTTGGGCCACTCGTGTTCTTTGGCACAACCGGAACAATGCTCGAC 258
||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 122 ATCAAACGCAAGTCTCTAGGTCCACTAGTGTTCTTTGGCACAACGGGAACAATGCTCGAC 181
Query 259 ATCATCATTGGTGTAAGTCAATGCGAGAGAGAACACGCAGAACACCAAATGAAGTTACTC 318
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 182 ATCATCATTGGTGTAAGTCAATGTGAGAGAGAACACGCAGAGCACCAAATGAAGTTACTC 241
Query 319 CAAGACTCTCAAAATGCCACAACAACAACCACCAACACAGAGACTGAAGA-AAGCTCTTC 377
||||||||||||||||||||||||||||||| | |||||||||||| || || ||||||
Sbjct 242 CAAGACTCTCAAAATGCCACAACAACAACCA--A-CACAGAGACTGAGGATAA-CTCTTC 297
Query 378 CATGTCCTAATCTTTTTTACATCTTTCTCACTAAGACTTTGATGTAATTTGATGCCACTC 437
|||| |||||||||||| |||| ||||||| ||||||||||||||| |||| ||||||||
Sbjct 298 CATGACCTAATCTTTTT-ACATTTTTCTCAATAAGACTTTGATGTACTTTGTTGCCACTC 356
Query 438 ACAAGTTAAACTTGTTTTAAGATATTGTGATT 469
||||||||||||||||| ||||||||||||||
Sbjct 357 ACAAGTTAAACTTGTTTCAAGATATTGTGATT 388
> Ahg912042 jgi|Araly1|912042|Al_scaffold_0001_2296
Length=294
Score = 473 bits (256), Expect = 4e-133
Identities = 284/297 (96%), Gaps = 3/297 (1%)
Strand=Plus/Plus
Query 91 ATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTAGGG 150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTAGGA 60
Query 151 ACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAG 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAG 120
Query 211 TCTCTTGGGCCACTCGTGTTCTTTGGCACAACCGGAACAATGCTCGACATCATCATTGGT 270
||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCTCTAGGTCCACTAGTGTTCTTTGGCACAACGGGAACAATGCTCGACATCATCATTGGT 180
Query 271 GTAAGTCAATGCGAGAGAGAACACGCAGAACACCAAATGAAGTTACTCCAAGACTCTCAA 330
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GTAAGTCAATGTGAGAGAGAACACGCAGAGCACCAAATGAAGTTACTCCAAGACTCTCAA 240
Query 331 AATGCCACAACAACAACCACCAACACAGAGACTGAAGAAAGCTCTTCCATGTCCTAA 387
||||||||||||||||||| | |||||||||||| || |||||||||||| |||||
Sbjct 241 AATGCCACAACAACAACCA--A-CACAGAGACTGAGGATAGCTCTTCCATGACCTAA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19383039212
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5