BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21940.1
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912043 jgi|Araly1|912043|Al_scaffold_0001_2297 760 0.0
> Ahg912043 jgi|Araly1|912043|Al_scaffold_0001_2297
Length=552
Score = 760 bits (411), Expect = 0.0
Identities = 508/555 (92%), Gaps = 6/555 (1%)
Strand=Plus/Plus
Query 1 ATGACCGGACACGTGGCGTATTCTTGGGCGATGGAGTTCAACTTGTGGGCGCATCTTGCT 60
||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 1 ATGACCGGAGACGTGGCGTATTCTTGGGTGATGGAGTTCAATTTGTGGGCGCATCTGGCT 60
Query 61 TTTATGCTTGTGATTCTCAAG-ATCATTGTTGCTCCGATGGTGGTGGAACTGGAACAGAT 119
|||| |||||||||| || || | |||| ||||||||||||||||| ||||||||| |||
Sbjct 61 TTTAGGCTTGTGATTTTC-AGAACCATTTTTGCTCCGATGGTGGTGAAACTGGAACGGAT 119
Query 120 GAGAAAAGTACGAGAAGAGTGTGACGTGCAGCTGCTCGTGGACTAC-GAGATCGCAATGG 178
|||||| |||||||||||||| ||||||||||| |||||||| | | ||||| ||||||
Sbjct 120 GAGAAACGTACGAGAAGAGTGCGACGTGCAGCTACTCGTGGA-TTCAGAGATATCAATGG 178
Query 179 ATGACGAAGATGGAGGTCGTGAGAGAAGAGAAGAAACTCGTCGTGTAAACGATCGTTTCT 238
|||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 179 ATGATGATGATGGAGGTCGTGAGAGAAGAGAAGAGACTCGTCGAGTAAACGATCGTTTCT 238
Query 239 TTCTTGCAGTTTCGCTCGCCATTTTCACCGGAATCTGCAAACGAGCTTCTGGTTTCGACG 298
||||||||||||| |||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 239 TTCTTGCAGTTTCCCTCGCCATTTTCACCGGAATCTGCAAACGATCAGCTGGTTTTGACG 298
Query 299 GTTCATATCTAACGGAGACGACGAAGAACGGACACGTGGCGTTATACTGTGCATCAGAGC 358
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 299 GTTCATATCTAACGGAGACGACGAAGAACGGACACGTGGCGTTCTACTGCGCATCAGAGC 358
Query 359 TGAACAAGATGGCCGATATGTGCTTTATGGTGGTGATTATCAGAATCGGTTTATCGATGC 418
| || ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 359 TCAATAAGATGGCCGATATGTGTTTTACGGTGGTGATTATCAGAATCGGTTTATCGATGC 418
Query 419 TTGGACTCACGTTTGCGCCGGTGGTGATGCGTAGACTACGAGAAGAGACGGACATGAAAC 478
|||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 419 TTGGACTCACTTTTGCGCCGGTGGTGATGCGAAGACTACGAGAAGAGTCGGACATGAAAC 478
Query 479 TTACGTTGGGTTCTATCTGCCTAGC-GATTTCGCTCTGCTTCTCCGCTTATCTTCGGTTC 537
| ||| |||||| |||||||||| | |||||| |||||||||||||||||||| |||||
Sbjct 479 TGACGATGGGTTTTATCTGCCTA-CTGATTTCACTCTGCTTCTCCGCTTATCTCCGGTTG 537
Query 538 TTCGTCGTCGGATGA 552
||||||||| |||||
Sbjct 538 TTCGTCGTCCGATGA 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20146150992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5