BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21950.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921197 jgi|Araly1|921197|scaffold_102478.1 542 2e-153
Ahg921198 jgi|Araly1|921198|scaffold_102479.1 207 6e-53
> Ahg921197 jgi|Araly1|921197|scaffold_102478.1
Length=436
Score = 542 bits (293), Expect = 2e-153
Identities = 381/424 (90%), Gaps = 4/424 (1%)
Strand=Plus/Plus
Query 71 TCCTGCAAAATTTCGGTCGCCATGGATGATGGAGCTGTTGAGAGACATGAAGAGCAACGT 130
|||||||||||| || ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 3 TCCTGCAAAATTCCGATCGCCATGGATGATGGAGCTGTTGAGATACGTGAAGAGCAACGT 62
Query 131 GAGAGACGTGAAGAGCTTCGTCGAATGGCCGTTCGTTTCGTCGTCGCAGTGGCGCTCGAT 190
|| |||||||||||| |||||| || |||||| ||||||| |||||| |||||||||
Sbjct 63 GACAGACGTGAAGAGAAACGTCGATTGATCGTTCGATTCGTCGCCGCAGTAGCGCTCGAT 122
Query 191 CTTTTCACTGGAGTCTACAAACGAGCAGCTGGTTTCGAAGGTTCAGATCCAAATTCGGGA 250
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 123 CTTTTCACCGGAGTCTACAAACGAGCAGCTGGTTTCGACGGTTCAGATCCAAATTCGGGA 182
Query 251 ACGGAGACGACGGAGAACGAACACAGAGCGTTCTTTTGGGCATCGGGTTTCAACAAAGCA 310
|||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| |
Sbjct 183 ACGGAGACGACGGAGAACGAACACAGTGCGTTCTTTTGGGCAGCGATTTTCAACAAAGTA 242
Query 311 GCTCATTTCTCTTT-TATGTTGGTGATTTTTCAAATCCTTGCATCGGTGGTGGTATTGGC 369
|||||||| | ||| ||||||||||||||||||||| ||| | ||||||||||| |||||
Sbjct 243 GCTCATTTAT-TTTGTATGTTGGTGATTTTTCAAATACTTTCCTCGGTGGTGGTGTTGGC 301
Query 370 ACGACGTATGCGAAGTTTCCGAGAAGACTGCGATATGAAGCTTTTGC-TGGGTTTAATTT 428
|||||| ||||||||| ||||||||||||||||||||||||| || ||| ||| ||
Sbjct 302 ACGACGGATGCGAAGTCACCGAGAAGACTGCGATATGAAGCTTCTGGGTGG-TTTCATCA 360
Query 429 GCGTAACGATCTCGCTCTCTCTTATGGCGTATCTTCGCTGGTGGGTGAGTTGTTAATCGT 488
|||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||
Sbjct 361 GCGTAACGATCTCGCTCTGTCTCATGGCGTATCTTCGCTGGTGGGTAAGTTGTTAGTCGA 420
Query 489 TCTC 492
||||
Sbjct 421 TCTC 424
> Ahg921198 jgi|Araly1|921198|scaffold_102479.1
Length=416
Score = 207 bits (112), Expect = 6e-53
Identities = 291/375 (78%), Gaps = 22/375 (6%)
Strand=Plus/Plus
Query 130 TGAGAGACGTGAAGAGCTTCGTCGAATGGCCGTTCGTTTCGTCGTCGCAGTGGCGCTCGA 189
|||||||||| ||| || |||||| || ||||||||||| ||||||||| ||||||
Sbjct 42 TGAGAGACGTAAAGTGCAACGTCGATTGATCGTTCGTTTCGGCGTCGCAGTCACGCTCGT 101
Query 190 TCTTTTCACTGGAGTCTACAAACGAGCAGCTGGTTTCGAA-GGTTCAGATCCAAATTCGG 248
|||||| || ||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 102 TCTTTTGACCGGAGTCTACAAACGAGCAGCTTGTTTC-AATGGTTCAGATCCAAATTCGG 160
Query 249 GAACGGAGACGACGGAGAACGAACACAGA-GCGTTCTTTTGGGCATCGG-GTTTCAACAA 306
||||||||||||||||||||| | || | || |||| ||||||||| ||| ||||||
Sbjct 161 GAACGGAGACGACGGAGAACGGAGAC-GCTGCCTTCTATTGGGCATCAATGTT-CAACAA 218
Query 307 AGCAGCTCAT-TTCTCTT-TTATGTTGGTGATTTTTCAAATCCTTGCATCGGTGG-TGGT 363
||||||||| || |||| || || | || | | || | ||| | | | | || |
Sbjct 219 AGCAGCTCAGATT-TCTTCTT-TGACCGCGACTATCCATACCCTACCC-CTGACGCTGAT 275
Query 364 ATTGGCACGACGTATGCGAAGTTTCCGAG-A-A--G-A-CTGCGATATGAAGCTTTTGCT 417
||||||| | | ||| || | |||| | | | | |||||||| | || | || |
Sbjct 276 GTTGGCACTAGGGATGAGACG---CCGAATATACTGCAACTGCGATACGCAGATCCTGTT 332
Query 418 GGGTTTAATTTGCGTAACGATCTCGCTCTCTCTTATGGCGTATCTTCGCTGGTGGGTGAG 477
| ||| | ||| ||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 333 GTCTTTCGTCTGCCTAACGATCTCGCTCTCTCTCATGGCGTATCTTCGCTGGTGGATGAA 392
Query 478 TT-GTTAATCGTTCT 491
|| |||| ||| |||
Sbjct 393 TTAGTTAGTCGCTCT 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5