BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21960.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472431 jgi|Araly1|472431|fgenesh2_kg.1__2385__AT1G21960.1 628 1e-179
Ahg921182 jgi|Araly1|921182|scaffold_102463.1 372 2e-102
> Ahg472431 jgi|Araly1|472431|fgenesh2_kg.1__2385__AT1G21960.1
Length=481
Score = 628 bits (340), Expect = 1e-179
Identities = 438/483 (91%), Gaps = 16/483 (3%)
Strand=Plus/Plus
Query 145 TACGAAGGTGTCATATCCTCCTACCCTAATGACTCGAAAAAACTGAATGATTGGTTGTAC 204
|||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1 TACGAAGGCGTCATATCCTCCTACCCTAATGACTTGAAAAAACTGACTGATTGGTTGTAC 60
Query 205 TCAGCAGGGCTCTCCGAACAATATGTTGACATTGCTAACTCTCAACTCACTGAACGAATC 264
| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TTAGCAGGGCTCTCCGACCAATATGTTGACATTGCTAACTCTCAACTTACTGAACGAATC 120
Query 265 TGTAAGTCGATT-TCTATGGTAGACTCTTCAGTTTGTGCTACTTTAGTTTACATGTACTG 323
|||||||||||| | ||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 121 TGTAAGTCGATTAT-TATGGTAGACTCTCCAGTTTGTGCTACGTTAGTGTACATGTACTG 179
Query 324 TAAAGTCATTGTT--C-CACCT-C--GGATTGACTCGTTTGATGAGACCACCAATAATAT 377
||||||||||||| | | ||| | ||||||||||||| ||||||||||||||||||||
Sbjct 180 TAAAGTCATTGTTCCCTCTCCTCCTTGGATTGACTCGTTCGATGAGACCACCAATAATAT 239
Query 378 -CGAGTTGATTAGACCGGCAAATAAGCTTGTGGTTGACCGTTTGGCAAGGAAAGTATAT- 435
|| ||| ||||||||||||| |||||||| ||||| ||||||||||||||| |||||
Sbjct 240 CCG-GTTAATTAGACCGGCAAGTAAGCTTGCGGTTGGTCGTTTGGCAAGGAAAATATATA 298
Query 436 -----AATAAGAAGAAGAAATCCAACTCTGACGCGAGCGTGTGCACAATTTGTTTGGAGG 490
||||||||||||| ||||| | |||||| ||| ||||| |||||||||||||||
Sbjct 299 AGAACAATAAGAAGAAGACGTCCAAGTTTGACGCCAGCATGTGCGCAATTTGTTTGGAGG 358
Query 491 AGTTTGAAAAGGGAGAAATAGTGGTGACCTTACCATGTGGCCACGAGTTTGACGATGGAT 550
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 GGTTTGAAAAGGGAGAAATAGTCGTGACCTTACCATGTGGCCACGAGTTTGACGATGGAT 418
Query 551 GTATTGGGAAGTGGTTTTTGAAAGACCATGTTTGTCCATTGTGCCGTTTCGAGTTGCCTT 610
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 419 GTATTGTGAAGTGGTTTTTGAAAGATCATGTTTGTCCATTGTGCCGTTTCGAGTTGCCGT 478
Query 611 GTT 613
|||
Sbjct 479 GTT 481
> Ahg921182 jgi|Araly1|921182|scaffold_102463.1
Length=715
Score = 372 bits (201), Expect = 2e-102
Identities = 281/317 (89%), Gaps = 16/317 (5%)
Strand=Plus/Plus
Query 313 TACATGTACTGTAAAGTCATTGTTCCA-C-C-TC---GGATTGACTCGTTTGATGAGACC 366
|||||||||||||||||||||||||| | | || ||||||||||||| |||||||||
Sbjct 381 TACATGTACTGTAAAGTCATTGTTCCCTCTCCTCCTTGGATTGACTCGTTCGATGAGACC 440
Query 367 ACCAATAATATC-GAGTTGATTAGACCGGCAAATAAGCTTGTGGTTGACCGTTTGGCAAG 425
|||||||||||| | ||| ||||||||||||| |||||||| ||||| |||||||||||
Sbjct 441 ACCAATAATATCCG-GTTAATTAGACCGGCAAGTAAGCTTGCGGTTGGTCGTTTGGCAAG 499
Query 426 GAAAGTATATAATAAGAA---GAAGAA-A--TCCAACTCTGACGCGAGCGTGTGCACAAT 479
|||| ||||||| || || |||||| | ||||| | |||||| ||| ||||||||||
Sbjct 500 GAAAATATATAAGAACAATAAGAAGAAGACGTCCAAGTTTGACGCCAGCATGTGCACAAT 559
Query 480 TTGTTTGGA-GGAGTTTGAAAAGGGAGAAATAGTGGTGACCTTACCATGTGGCCACGAGT 538
||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 560 TTGTTTGGATGG-GTTTGAAAAAGGAGAAATAGTCGTGACCTTACCATGTGGCCACGAGT 618
Query 539 TTGACGATGGATGTATTGGGAAGTGGTTTTTGAAAGACCATGTTTGTCCATTGTGCCGTT 598
||||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 619 TTGACGACGGATGTATTGTGAAGTGGTTTTTGAAAGATCATGTTTGTCCATTGTACCGTT 678
Query 599 TCGAGTTGCCTTGTTAA 615
|||||||||||||||||
Sbjct 679 TCGAGTTGCCTTGTTAA 695
Score = 309 bits (167), Expect = 2e-83
Identities = 220/244 (90%), Gaps = 10/244 (4%)
Strand=Plus/Plus
Query 26 GCGAAATAGACCTCAAACCGAAATCACAAGATGCTGGATCATTCAAAATCTGCGTAAGTG 85
||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 148 GCGAAATCGACCTCAAACCTAAATCAAAAGATGCTGGATCATTCAAAATCTGCGTAAGTG 207
Query 86 CCCGAAGATCGGACACATCAATTAGTCTTCCACCAAATTTCGTTCTCTCGTACAATGACT 145
||| ||| ||||||||||||||||||||| ||||||||||| | |||| | | | |
Sbjct 208 CCCTAAGGTCGGACACATCAATTAGTCTTATACCAAATTTCG-T-TCTC-T-C---G--T 258
Query 146 ACGAAGGTGTCATATCCTCCTACCCTAATGACTCGAAAAAACTGAATGATTGGTTGTACT 205
||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 259 ACGAAGGCGTCATATCCTCCTACCCTAATGACTTGAAAAAACTGACTGATTGGTTGTACT 318
Query 206 CAGCAGGGCTCTCCGAACAATATGTTGACATTGCTAACTCTCAACTCACTGAACGAATCT 265
||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 319 TAGCAGGGATCTCCGACCAATCTGTTGACATTGCTAACTCTCAACTCACTGAACGAATCT 378
Query 266 -GTA 268
|||
Sbjct 379 TGTA 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5