BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21960.1 Length=615 Score E Sequences producing significant alignments: (Bits) Value Ahg472431 jgi|Araly1|472431|fgenesh2_kg.1__2385__AT1G21960.1 628 1e-179 Ahg921182 jgi|Araly1|921182|scaffold_102463.1 372 2e-102 > Ahg472431 jgi|Araly1|472431|fgenesh2_kg.1__2385__AT1G21960.1 Length=481 Score = 628 bits (340), Expect = 1e-179 Identities = 438/483 (91%), Gaps = 16/483 (3%) Strand=Plus/Plus Query 145 TACGAAGGTGTCATATCCTCCTACCCTAATGACTCGAAAAAACTGAATGATTGGTTGTAC 204 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1 TACGAAGGCGTCATATCCTCCTACCCTAATGACTTGAAAAAACTGACTGATTGGTTGTAC 60 Query 205 TCAGCAGGGCTCTCCGAACAATATGTTGACATTGCTAACTCTCAACTCACTGAACGAATC 264 | ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 TTAGCAGGGCTCTCCGACCAATATGTTGACATTGCTAACTCTCAACTTACTGAACGAATC 120 Query 265 TGTAAGTCGATT-TCTATGGTAGACTCTTCAGTTTGTGCTACTTTAGTTTACATGTACTG 323 |||||||||||| | ||||||||||||| ||||||||||||| ||||| ||||||||||| Sbjct 121 TGTAAGTCGATTAT-TATGGTAGACTCTCCAGTTTGTGCTACGTTAGTGTACATGTACTG 179 Query 324 TAAAGTCATTGTT--C-CACCT-C--GGATTGACTCGTTTGATGAGACCACCAATAATAT 377 ||||||||||||| | | ||| | ||||||||||||| |||||||||||||||||||| Sbjct 180 TAAAGTCATTGTTCCCTCTCCTCCTTGGATTGACTCGTTCGATGAGACCACCAATAATAT 239 Query 378 -CGAGTTGATTAGACCGGCAAATAAGCTTGTGGTTGACCGTTTGGCAAGGAAAGTATAT- 435 || ||| ||||||||||||| |||||||| ||||| ||||||||||||||| ||||| Sbjct 240 CCG-GTTAATTAGACCGGCAAGTAAGCTTGCGGTTGGTCGTTTGGCAAGGAAAATATATA 298 Query 436 -----AATAAGAAGAAGAAATCCAACTCTGACGCGAGCGTGTGCACAATTTGTTTGGAGG 490 ||||||||||||| ||||| | |||||| ||| ||||| ||||||||||||||| Sbjct 299 AGAACAATAAGAAGAAGACGTCCAAGTTTGACGCCAGCATGTGCGCAATTTGTTTGGAGG 358 Query 491 AGTTTGAAAAGGGAGAAATAGTGGTGACCTTACCATGTGGCCACGAGTTTGACGATGGAT 550 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 359 GGTTTGAAAAGGGAGAAATAGTCGTGACCTTACCATGTGGCCACGAGTTTGACGATGGAT 418 Query 551 GTATTGGGAAGTGGTTTTTGAAAGACCATGTTTGTCCATTGTGCCGTTTCGAGTTGCCTT 610 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 419 GTATTGTGAAGTGGTTTTTGAAAGATCATGTTTGTCCATTGTGCCGTTTCGAGTTGCCGT 478 Query 611 GTT 613 ||| Sbjct 479 GTT 481 > Ahg921182 jgi|Araly1|921182|scaffold_102463.1 Length=715 Score = 372 bits (201), Expect = 2e-102 Identities = 281/317 (89%), Gaps = 16/317 (5%) Strand=Plus/Plus Query 313 TACATGTACTGTAAAGTCATTGTTCCA-C-C-TC---GGATTGACTCGTTTGATGAGACC 366 |||||||||||||||||||||||||| | | || ||||||||||||| ||||||||| Sbjct 381 TACATGTACTGTAAAGTCATTGTTCCCTCTCCTCCTTGGATTGACTCGTTCGATGAGACC 440 Query 367 ACCAATAATATC-GAGTTGATTAGACCGGCAAATAAGCTTGTGGTTGACCGTTTGGCAAG 425 |||||||||||| | ||| ||||||||||||| |||||||| ||||| ||||||||||| Sbjct 441 ACCAATAATATCCG-GTTAATTAGACCGGCAAGTAAGCTTGCGGTTGGTCGTTTGGCAAG 499 Query 426 GAAAGTATATAATAAGAA---GAAGAA-A--TCCAACTCTGACGCGAGCGTGTGCACAAT 479 |||| ||||||| || || |||||| | ||||| | |||||| ||| |||||||||| Sbjct 500 GAAAATATATAAGAACAATAAGAAGAAGACGTCCAAGTTTGACGCCAGCATGTGCACAAT 559 Query 480 TTGTTTGGA-GGAGTTTGAAAAGGGAGAAATAGTGGTGACCTTACCATGTGGCCACGAGT 538 ||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 560 TTGTTTGGATGG-GTTTGAAAAAGGAGAAATAGTCGTGACCTTACCATGTGGCCACGAGT 618 Query 539 TTGACGATGGATGTATTGGGAAGTGGTTTTTGAAAGACCATGTTTGTCCATTGTGCCGTT 598 ||||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||| Sbjct 619 TTGACGACGGATGTATTGTGAAGTGGTTTTTGAAAGATCATGTTTGTCCATTGTACCGTT 678 Query 599 TCGAGTTGCCTTGTTAA 615 ||||||||||||||||| Sbjct 679 TCGAGTTGCCTTGTTAA 695 Score = 309 bits (167), Expect = 2e-83 Identities = 220/244 (90%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 26 GCGAAATAGACCTCAAACCGAAATCACAAGATGCTGGATCATTCAAAATCTGCGTAAGTG 85 ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 148 GCGAAATCGACCTCAAACCTAAATCAAAAGATGCTGGATCATTCAAAATCTGCGTAAGTG 207 Query 86 CCCGAAGATCGGACACATCAATTAGTCTTCCACCAAATTTCGTTCTCTCGTACAATGACT 145 ||| ||| ||||||||||||||||||||| ||||||||||| | |||| | | | | Sbjct 208 CCCTAAGGTCGGACACATCAATTAGTCTTATACCAAATTTCG-T-TCTC-T-C---G--T 258 Query 146 ACGAAGGTGTCATATCCTCCTACCCTAATGACTCGAAAAAACTGAATGATTGGTTGTACT 205 ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 259 ACGAAGGCGTCATATCCTCCTACCCTAATGACTTGAAAAAACTGACTGATTGGTTGTACT 318 Query 206 CAGCAGGGCTCTCCGAACAATATGTTGACATTGCTAACTCTCAACTCACTGAACGAATCT 265 ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 319 TAGCAGGGATCTCCGACCAATCTGTTGACATTGCTAACTCTCAACTCACTGAACGAATCT 378 Query 266 -GTA 268 ||| Sbjct 379 TGTA 382 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22492521030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5