BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21980.1
Length=2925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472433 jgi|Araly1|472433|fgenesh2_kg.1__2387__AT1G21980.1 4069 0.0
Ahg476937 jgi|Araly1|476937|fgenesh2_kg.2__2067__AT1G77740.1 2146 0.0
Ahg912037 jgi|Araly1|912037|Al_scaffold_0001_2291 442 7e-123
> Ahg472433 jgi|Araly1|472433|fgenesh2_kg.1__2387__AT1G21980.1
Length=2592
Score = 4069 bits (2203), Expect = 0.0
Identities = 2487/2616 (95%), Gaps = 52/2616 (2%)
Strand=Plus/Plus
Query 315 ATGAGTGATTCagaagaagacgaagaagaagaagaagctagtgaagtcattttaagcag- 373
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTGAATCAGAAGAAGAC---GAAGAAGAAGAAGCTAGTGAAGTCATTTTAAGCAGA 57
Query 374 --cgtcgttcagaagaagaagaagaagaaTCTGCGTTTCGGT---GAAGAAGTAGAGAGA 428
||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 58 AACGTCGTTGAGAAGAAGAAGAAGAAGAATCTGCGTTTTGGTGAAGAAGAAGAAGAGAGA 117
Query 429 CGAGACGGTTTGGTGTTGTTAGCTCAATCTACTCCAATGGTGAGATCGAGATCTCAAGGA 488
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 118 CGAGACGGTTTGGTGTTGTTAGCTCAATCTACTCAAATGGTGAGATCGAGATCTCAAGGA 177
Query 489 ACGACTCGGCGCGTGACTCCCACGCCTTTAGTAGATGTTGAGAAGCCGCTACCAAACGGA 548
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 178 ACGACTCGGCGCGTGACTCCCACGCCTTTACTGGATGTTGAGAAGCCGCTACCGAACGGA 237
Query 549 GATCTTTACATCGGAAGTTTCTCCGGTGGGTTTCCACATGGATCCGGGAAGTATCTATGG 608
||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 238 GATCTCTACATCGGAAGCTTCTCCGGCGGGTTTCCACATGGATCCGGCAAGTATCTATGG 297
Query 609 AAAGATGGGTGCATGTACGAAGGAGATTGGAAACGAGGGAAAGCTTCAGGGAAAGGCAAA 668
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 298 AAAGATGGGTGCATGTATGAAGGTGATTGGAAACGAGGTAAAGCTTCAGGGAAAGGCAAA 357
Query 669 TTCTCATGGCCAAGTGGAGCTACTTACGAAGGTGAATTCAAATCTGGGAGAATGGAAGGT 728
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 TTCTCATGGCCAAGTGGAGCTACTTACGAAGGTGAATTCAAATCTGGGAGGATGGAAGGT 417
Query 729 TTTGGTACTTTCACTGGAGCTGATGGAGATACTTATAGAGGAACTTGGGTTGCTGATAGA 788
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 TTTGGTACTTTCACTGGAGCTGATGGAGATACTTATAGAGGTACTTGGGTTGCTGATAGA 477
Query 789 AAACACGGACATGGACAAAAGCGTTATGCAAATGGAGATTTTTATGAAGGTACTTGGAGA 848
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAACATGGTCATGGACAAAAGCGTTATGCAAATGGAGATTTTTATGAAGGTACTTGGAGA 537
Query 849 AGGAATCTACAAGATGGTAGAGGTAGGTATGTGTGGAGAAATGGGAATCAGTATACTGGA 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGGAATCTACAAGATGGTAGAGGTAGGTATGTGTGGAGAAATGGGAATCAGTATACTGGA 597
Query 909 GAGTGGCGTAGTGGTGTGATTTCTGGGAAAGGTTTGCTTGTTTGGCCTAATGGGAATCGA 968
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 GAGTGGCGTAGCGGTGTGATTTCTGGGAAAGGTTTACTTGTTTGGCCTAATGGGAATCGA 657
Query 969 TATGAAGGTTTGTGGGAGAATGGGATTCCTAAAGGGAA-TGGTGTGTTTACTTGGAGTGA 1027
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 658 TATGAGGGTTTGTGGGAGAATGGGATTCCTAAA-GGAAGTGGTGTGTTTACTTGGAGTGA 716
Query 1028 TGGGAGTTCTTGTGTTGGTGCTTGGAATGAGAGTAATATTATGAGGAGTTTCTTTAATGG 1087
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 TGGGAGTTCTTGTGTTGGTGCTTGGAATGAGAGTAAGATTATGAGGAGTTTCTTTAATGG 776
Query 1088 TGTTGAGAAGAATGATTTGATTGTGGGGAATAGGAAGAGATCTTCTGTTGATAGTGGAGC 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGTTGAGAAGAATGATTTGATTGTGGGGAATAGGAAGAGATCTTCTGTTGATAGTGGAGC 836
Query 1148 TGGGAGTTTGGGAGGTGAGAAAGTTTTTCCAAGAATCTGTATTTGGGAATCTGATGGTGA 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGGGAGTTTGGGAGGTGAGAAAGTTTTTCCAAGAATCTGTATTTGGGAATCTGATGGTGA 896
Query 1208 AGCTGGAGATATCACTTGTGATATTATTGATAATGTTGAAGCTTCCATGATTTATAGAGA 1267
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AGCTGGGGATATCACTTGTGATATTATTGATAATGTTGAAGCTTCCATGATTTATAGAGA 956
Query 1268 TAGGATCTCTGTTGATCGTGATGGGTTTAGGCAGTTTAAGAAGAATCCTTGTTGGTTTAA 1327
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 957 TAGGATCTCTGTGGATCGTGATGGGTTTAGGCAGTTTAAGAAGAATCCTTGTTGGTTTGA 1016
Query 1328 TGGTGAGGCTAAGAAACCTGGACAGACTATTTCTAAAGGGCATAAGAAATATGATTTGAT 1387
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1017 TGGTGAGGCTAAGAAACCTGGAGAGACTATATCTAAAGGGCATAAGAAATATGATTTGAT 1076
Query 1388 GCTGAATTTGCAATTAGGAATCAGGTATTCTGTTGGCAAACATGCTTCGATTGTTCGTGA 1447
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1077 GCTGAATTTGCAATTAGGAATCAGGTATTCTGTTGGTAAACATGCTTCGATTGTTCGTGA 1136
Query 1448 TCTTAAACAGACTGATTTCGATCCAAAGGAGAAATTTTGGACAAGGTTTCCACCAGAAGG 1507
||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 TCTTAAACAGAATGATTTTGATCCAAAGGAGAAATTTTGGACAAGGTTTCCACCGGAAGG 1196
Query 1508 GACTAAGACAACACCGCCGCATCAGTCAGTGGATTTCAGGTGGAAGGATTATTGCCCTTT 1567
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GACTAAGACCACACCGCCGCATCAGTCAGTGGATTTCAGGTGGAAGGATTATTGCCCTTT 1256
Query 1568 AGTGTTCAGACGTCTCAGGGAGCTTTTCCAAGTGGATCCAGCTAAGTATATGCTAGCTAT 1627
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1257 GGTGTTCAGACGTCTCAGGGAGCTTTTCCAAGTGGATCCAGCTGAGTATATGTTAGCTAT 1316
Query 1628 ATGTGGAAATGATGCTCTCCGCGAACTATCTTCACCTGGAAAGAGTGGAAGCtttttttA 1687
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1317 ATGTGGAAATGATGCTCTCCGCGAACTGTCTTCACCTGGAAAGAGTGGAAGCTTTTTTTA 1376
Query 1688 CCTAACTCAAGATGATAGATTTATGATCAAAACGGTGAAGAAATCAGAAGTCAAGGTTCT 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CCTAACTCAAGATGATAGATTTATGATCAAAACGGTGAAGAAATCAGAAGTCAAGGTTCT 1436
Query 1748 TCTAAGAATGCTTCCAAGTTACTACAAACATGTCTGCCAATACGAAAACTCCCTTGTGAC 1807
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TCTAAGAATGCTTCCGAGTTACTACAAACATGTCTGCCAATACGAAAACTCCCTTGTGAC 1496
Query 1808 TAGATTCTACGGTGTTCATTGTGTCAAACCTGTTGGTGGCCAAAAGACTCGGTTTATCGT 1867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TAGATTCTACGGTGTTCATTGTGTCAAACCTGTTGGTGGCCAAAAGACTCGGTTTATCGT 1556
Query 1868 TATGGGAAACTTATTCTGCTCCGAGTATAGAATCCAGAGACGGTTTGACCTCAAAGGGTC 1927
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1557 CATGGGAAACTTATTCTGCTCCGAGTATAGAATCCAGAGACGATTTGACCTCAAAGGGTC 1616
Query 1928 TTCTCATGGGCGTAGCACTGCAAAGCCTGAAGGAGAAATTGATGAGACCACGACTCTCAA 1987
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1617 TTCTCATGGACGTAGCACTGCAAAACCTGAAGGAGAAATTGATGAGACCACGACTCTCAA 1676
Query 1988 GGACCTTGATCTCAATTTTTCTTTCCGTCTTCAGAGAAACTGGTATCAAGAGCTTATGAA 2047
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GGACCTTGATCTCAATTTTGCTTTCCGTCTTCAGAGAAACTGGTATCAAGAGCTTATGAA 1736
Query 2048 GCAAATAAAACGCGATTGTGAGTTCTTGGAAGCAGAGAGAATAATGGATTATAGCCTTTT 2107
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1737 GCAAATAAAACGCGACTGTGAGTTCTTGGAAGCCGAGAGGATAATGGATTATAGCCTTTT 1796
Query 2108 AGTTGGTGTTCACTTCCGTGATGACAACACAGGAGAAAAGATGGGGCTTTCTCCATTCGT 2167
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1797 AGTTGGTGTTCACTTCCGTGATGACAACACAGGAGAAAAGATGGGGCTCTCTCCATTCGT 1856
Query 2168 TTTGAGATCTGGTAGGATAGATTCATATCAGAATGAAAAATTCATGCGCGGTTGTCGCTT 2227
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1857 TTTGAGATCTGGTAGGATAGATTCATATCAGAATGAGAAATTCATGCGCGGTTGTCGCTT 1916
Query 2228 CCTAGAGGCAGAACTTCAAGACATGGACCGGATTTTAGCTGGCAGGAAACCATCGATCAG 2287
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 CCTAGAGGCTGAACTTCAAGACATGGACCGGATTTTAGCTGGCAGGAAACCATCGATCAG 1976
Query 2288 ATTAGGCGCAAACATGCCAGCAAAAGCTGAACGAATGGCCCGGAGAAGCGATTTTGATCA 2347
||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 1977 ATTAGGCGCAAACATGCCAGCAAGAGCTGAACGAATGGCCCGGAGAAGTGATTTCGATCA 2036
Query 2348 GTATTCATCAGGAGGAGCCAGTTATCCATCACACGGTGAGATGTACGAAGTTGTTCTCTA 2407
|||||||||||||||||| | ||| ||||| |||||||||||||||||||| ||||||||
Sbjct 2037 GTATTCATCAGGAGGAGCGAATTACCCATCTCACGGTGAGATGTACGAAGTGGTTCTCTA 2096
Query 2408 CTTTGGAGTCATTGACATCTTGCAAGACTACGACATAACCAAAAAGATCGAGCATGCGTA 2467
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2097 CTTTGGAGTCATTGACATCTTGCAAGACTACGACATAACCAAAAAAATCGAGCATGCGTA 2156
Query 2468 TAAGTCACTGCAAGCCGATCCTGCTTCGATCTCAGCTGTTGATCCTAAACTCTATTCAAA 2527
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2157 TAAGTCACTACAAGCCGATCCTGCTTCGATCTCAGCTGTTGATCCTAAGCTCTATTCAAA 2216
Query 2528 GAGGTTCAGAGACTTCATCAGTAGGATCTTCATTGAAGAGGGCTAAAGACAA-GAAGGCT 2586
||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 2217 GAGGTTCAGAGACTTCATCAGTAGGATCTTCATTGAAGACGGCTAAAGATAAAGAAGGCT 2276
Query 2587 AA-AGTTTTTAACTAACATTCTCGGCT-----CT--ACGGAAATGTGAAGAAAG-CTGCG 2637
|| | |||| ||||||||||||||||| || ||||||||||||| |||| |||||
Sbjct 2277 AAGAATTTT-AACTAACATTCTCGGCTTTTTGCTCTACGGAAATGTGAAAAAAGGCTGCG 2335
Query 2638 C-GGGAAGAGTAAAAA-------GGTAAATCTCAAGGATAGAAGAAAAGCGATTTCGGAA 2689
| |||||| ||||||| |||||||||||| ||||| ||||| ||||||| ||||
Sbjct 2336 CCGGGAAGGGTAAAAACTAAAAAGGTAAATCTCAAAGATAGGAGAAAGGCGATTTGGGAA 2395
Query 2690 TTTTATGTTT-ATATATTT-TGAGATGACCAATCAAGTTTTTGGGTTGGGGAGGGGCTTT 2747
|||||| || |||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 2396 TTTTAT-TTACATATATTTATGAGATGATCAATCAAGTTTT-GGGTTGGGGAGGGGCTTT 2453
Query 2748 ATTTATTTTTGTGGTGAGCCGTTtatatatataatatttatatatgtgaatataGATTGA 2807
|||||||| |||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct 2454 ATTTATTTCTGTGGTGAGCCGTTTATATATA-A-T-TTAATATATGTGAATATAGATTGA 2510
Query 2808 AGGTTTTAGTACATAGGCAGACAAGAAATT-ACAAGGAAAAAAGGGTTTGGTAAATTCCG 2866
| || | ||||||| ||||| ||||| |||||| ||||||| ||||||||
Sbjct 2511 ---T---AG------G-CAGACAAAAAATTTACAAGAAAAAAAAGGTTTGG-AAATTCCG 2556
Query 2867 AAAATGTGGAATAAAGTAAAGTGTACAAGTaaaaaa 2902
|||||||||||||||||||||||||||||||||||
Sbjct 2557 TAAATGTGGAATAAAGTAAAGTGTACAAGTAAAAAA 2592
> Ahg476937 jgi|Araly1|476937|fgenesh2_kg.2__2067__AT1G77740.1
Length=2567
Score = 2146 bits (1162), Expect = 0.0
Identities = 1859/2191 (85%), Gaps = 65/2191 (3%)
Strand=Plus/Plus
Query 417 GAAGTAGAGAGACGAGACGGTTTGGTGTTGTTAGCTCAATCT-ACTCCAATGGTGA-GAT 474
|||| ||||||| |||||| |||| |||| ||||| | | || || ||||| | |||
Sbjct 186 GAAGAAGAGAGAAGAGACGATTTGTTGTTACTAGCT---T-TAACGCCGATGGT-ACGAT 240
Query 475 CGAGATCTCAAGGAACGACTCGGCGCGTGACTCCCACG-C-CTTTAG-TAGATGTTGAGA 531
||| ||||| |||||| || |||||||| ||||| ||| | | | | |||| || ||||
Sbjct 241 CGAAATCTCTAGGAACTACACGGCGCGTCACTCCAACGCCACCTCCGTTAGACGTGGAGA 300
Query 532 AGCCGCTACCAAACGGAGATCTTTACATCGGAA-GTTTCTCCGGTGGGTTT-CCACATGG 589
||||| |||||||||||||||| || || |||| |||| ||||| |||||| ||| | ||
Sbjct 301 AGCCGTTACCAAACGGAGATCTCTATATGGGAACGTTT-TCCGGCGGGTTTCCCA-ACGG 358
Query 590 ATCCGGGAAGTATCTATGGAAAGATGGGTGCATGTACGAAGGAGATTGGAAACGAGGGAA 649
|||||| |||||| | ||||| ||||| || ||||||||||| || |||||||| |||||
Sbjct 359 ATCCGGTAAGTATTTGTGGAAGGATGGTTGTATGTACGAAGGCGAGTGGAAACGTGGGAA 418
Query 650 AGCTTCAG-GG-AAAGGCAAATTCTCATGGCCAAGTGGAGCTACTTACGAAGGTGAATTC 707
||| || || |||||||| || |||||||| ||||| || ||||||||||| || |||
Sbjct 419 AGC--GAGTGGTAAAGGCAAGTTTTCATGGCCGAGTGGTGCGACTTACGAAGGAGAGTTC 476
Query 708 AAATCTGGGAGAATGGAAGGTTTTGGTACTTTCACTGGAGCTGATGGAGATACTTATAGA 767
|||||||||||||||||||| ||||| ||||| ||| | |||||| ||||||||| ||
Sbjct 477 AAATCTGGGAGAATGGAAGGATTTGGGACTTTTGTTGGCGTTGATGGTGATACTTATCGA 536
Query 768 GGAACTTGGGTTGCTGATAGAAAACACGGACATGGACAAAAGCGTTATGCAAATGGAGAT 827
|| |||||||||||||| | ||||| || ||||| || ||| | ||||| || ||||||
Sbjct 537 GGCTCTTGGGTTGCTGATCGGAAACATGGTCATGGTCAGAAGAGATATGCCAACGGAGAT 596
Query 828 TTTTATGAAGGTACTTGGAGAAGGAATCTACAAGATGGTAGAGGTA-GGTATGTGTGGA- 885
| |||||||| || ||| | |||||||||| ||||| ||||| | | ||||| ||||
Sbjct 597 TACTATGAAGGAACATGGCGGCGGAATCTACAGGATGGGAGAGG-ACGATATGTTTGGAT 655
Query 886 GAAATGGGAATCAGTATACTGGAGAGTGGCGTAGTGGTGTGATTTCTGGGAAAGGTTTGC 945
| ||||||||||||||||| ||||| ||| | | ||||||||||| ||| |||||| |||
Sbjct 656 G-AATGGGAATCAGTATACAGGAGAATGGAGGAATGGTGTGATTTGTGGTAAAGGTGTGC 714
Query 946 TTGTTTGGCCTAATGGGAATCGATATGAAGGTTTGTGGGAGAATGGGA-TTCCTAAAGGG 1004
||| |||||||||||||||| ||| ||||||| ||||| ||| ||| |||||||| ||
Sbjct 715 TTGCTTGGCCTAATGGGAATAGATTTGAAGGTCAATGGGAAAAT-GGAGTTCCTAAA-GG 772
Query 1005 AA-TGGTGTGTTTACTTGGAGTGATGGGAGTTCTTGTG-TTGGTGCTTGGAATGAGAGTA 1062
|| |||||||||||||||| |||||| |||||||| | | ||| |||||||||||||||
Sbjct 773 AAGTGGTGTGTTTACTTGGCCTGATGGAAGTTCTTG-GATCGGTTCTTGGAATGAGAGTA 831
Query 1063 AT-AT-T-ATGAGGAGTTTCTTTAATGGTG-TTGAGAAGAATGATTTGATTGTGGGGAAT 1118
| || | ||||||| ||| ||| |||| | ||||||||||||| |||||||| | |
Sbjct 832 GTAATCTCATGAGGAATTTTTTTGATGG-GATTGAGAAGAATGAGTTGATTGTTGCCACG 890
Query 1119 AGGAAGAGATCTTCTGTTGATAGTGGAGCTGGGAGTTTGGGAGGTGAGAAAG-TTTTTCC 1177
||||||||||||||||||||||||||||||||||||||| || ||| ||| |||| ||
Sbjct 891 AGGAAGAGATCTTCTGTTGATAGTGGAGCTGGGAGTTTGACTGGGGAG-AAGATTTTCCC 949
Query 1178 AAGAATCTGTATTTGGGAATCTGATGGTGAAGCTGGAGATATCACTTGTGATATTATTGA 1237
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 950 TAGAATCTGTATTTGGGAATCTGATGGTGAAGCTGGAGATATTACTTGTGATATTGTTGA 1009
Query 1238 TAATGTTGAAGCTTCCATGATTTATAGAGATAGGATCTCTGTTGATCGTGATGGGTTTAG 1297
|||||| |||||||| ||||||| ||||||||||| ||| ||||||||||||||||| |
Sbjct 1010 TAATGTGGAAGCTTCTGTGATTTACAGAGATAGGATTTCTATTGATCGTGATGGGTTTCG 1069
Query 1298 GCAGTTTAAGAAGAATCCTTGTTGGTTTAAT-GGTGAGGCTAAGAAACCTGGACAGACTA 1356
||||||| ||||||||||||||| ||| | ||||||||||||||||||||| |||| |
Sbjct 1070 TCAGTTTAGGAAGAATCCTTGTTG-TTTCAGCGGTGAGGCTAAGAAACCTGGAGAGACCA 1128
Query 1357 TTTCTAAAGGGCATAAGAAATATGATTTGATGCTGAATTTGCAAT-TAGGAATCAGGTAT 1415
| |||||||||||||||||||| ||||||||||| || |||||| | |||||||||||
Sbjct 1129 TATCTAAAGGGCATAAGAAATACGATTTGATGCTCAACTTGCAACAT-GGAATCAGGTAC 1187
Query 1416 TCTGTTGGCAAACATGCTTC-GATTGTTCGTGATCTTAAACAGA-CTGATTTCGATCCAA 1473
||||| |||||||||||||| | ||||||| ||||| ||||| | | ||||| || ||||
Sbjct 1188 TCTGTCGGCAAACATGCTTCCG-TTGTTCGAGATCTCAAACATAGC-GATTTTGACCCAA 1245
Query 1474 AG-GAGAAATTT-TGGACAAGGTTTCCACCAGAAGGGA-CTAAGACAACACCGCCGCATC 1530
| || ||| || ||||||||||| ||||| || ||| ||||||| ||||| || ||||
Sbjct 1246 -GTGA-AAAGTTCTGGACAAGGTTCCCACCGGA-GGGTTCTAAGACCACACCACCACATC 1302
Query 1531 AGTCAGTGGATTTCAGGTGGAAGGATTATTGCCCTTTAGTGTTCAGACGTCTCAGGGAGC 1590
||| || |||||| | |||||||| ||||||||||| ||||| ||||| || |||||||
Sbjct 1303 TGTCTGTTGATTTCCGCTGGAAGGACTATTGCCCTTTGGTGTTTAGACGGCTGAGGGAGC 1362
Query 1591 TTTTCCAAG-TGGATCCAGCTAAGTATATGCTAGCTATATGTGGAAATGATGCTCTCCGC 1649
| ||| | | ||||||| ||| | || ||||||||||| |||||||| |||||||| |
Sbjct 1363 TATTC-ACGGTGGATCCTGCTGATTACATGCTAGCTATCTGTGGAAACGATGCTCTTAGG 1421
Query 1650 GAACTATCTTCACCTGGAAAGAGTGGAAGCtttttttACCTAACTCAAGATGATAGATTT 1709
||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||
Sbjct 1422 GAACTATCTTCGCCTGGAAAGAGTGGAAGTTTTTTTTACTTAACTCAAGATGACAGATTT 1481
Query 1710 ATGATCAAAACGGTGAAGAAATCAGAAGTCAAGGTTCTTCTAAGAATGCTTCCAAGTTAC 1769
|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1482 ATGATCAAGACGGTGAAGAAATCAGAAGTCAAGGTGCTTCTACGAATGCTTCCAAGTTAC 1541
Query 1770 TACAAACATGTCTGCCAATACGAAAACTCC-CTTGTGACTAGATTCTACGGTGTTCATTG 1828
||||||||||||||||| || ||||| | | ||||||||| | ||||||||||| || ||
Sbjct 1542 TACAAACATGTCTGCCAGTATGAAAA-TACACTTGTGACTCGGTTCTACGGTGTGCACTG 1600
Query 1829 TGTCAAACCTGTTGGTGGCCAAAAGACTCGGTTTATCGTTATGGGAAACTTATTCTGCTC 1888
| ||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||
Sbjct 1601 TATCAAACCTGTTGGTGGCCAGAAGACTCGGTTTATTGTCATGGGGAACTTATTCTGCTC 1660
Query 1889 CGAGTATAGAATCCAGAGACGGTTTGACCTCAAAGGGTCTTCTCATGGGCG-TAGCAC-T 1946
||| |||||||||||||||||||||||||| ||||||||||| ||||| || || || |
Sbjct 1661 CGAATATAGAATCCAGAGACGGTTTGACCTGAAAGGGTCTTCCCATGGACGGTAT-ACCT 1719
Query 1947 GCAAAGCCTGAAGGAGAAATTGATGAGACCACGACTCTCAAGGACCTTGATCTCAATTTT 2006
|||| || ||||| |||||||||||||| || || ||||||||||||||||||||||||
Sbjct 1720 CCAAACCC-GAAGGGGAAATTGATGAGACTACTACCCTCAAGGACCTTGATCTCAATTTT 1778
Query 2007 TCTTTCCGTCTTCAGAGAAACTGGTATCAAGAGCTTATGAAGCAAATAAAACGCGATTGT 2066
||||||||||||||||||| ||||| ||||||||||||| |||||| || |||| |||
Sbjct 1779 GCTTTCCGTCTTCAGAGAAATTGGTACCAAGAGCTTATGACGCAAATTAAGTGCGACTGT 1838
Query 2067 GAGTTCTTGGAAGCAGAGAGAATAATGGATTATAGCCTTTTAGTTGGTGTTCACTTCCGT 2126
|||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1839 GAGTTCTTGGAAGCTGAGAGAATTATGGATTATAGCCTTTTGGTTGGCGTTCACTTCCGT 1898
Query 2127 GATGACAACACAGGAGA-AAAGATGGGGCTTTCTCCATTCGTTTTGAGATCTGGTAGGAT 2185
||||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 1899 GATGACACCACAGGAGACAAA-ATGGGGCTCTCTCCATTCGTTTTGAGATCTGGTAAGAT 1957
Query 2186 AGATTCATATCAGAATGAAAAATTCATGCGCGGTTGTCGCTTCCTAGAGGCAGAACTTCA 2245
||| || || || || || ||||| ||||| |||||||||||| | || || ||||||||
Sbjct 1958 AGAGTCGTACCAAAACGAGAAATTTATGCGTGGTTGTCGCTTCTTGGAAGCGGAACTTCA 2017
Query 2246 AGACATGGACCGGATTTTAGCTGGCAGGAAACCATCGAT-CAGATTAGGCGCAAACATGC 2304
|||||||||||| |||||||||||||||||||||| ||| | ||||||| ||||||||||
Sbjct 2018 AGACATGGACCGCATTTTAGCTGGCAGGAAACCATTGATTC-GATTAGGGGCAAACATGC 2076
Query 2305 CAGCAAAAGCTGAACGAATGGCCCGGAGAAGCGATTTTGATCAGTATTCATCAGGAGG-A 2363
| |||| ||| ||||||||||| | |||||||| | |||||||||||| || ||||| |
Sbjct 2077 CTGCAAGAGCAGAACGAATGGCGAGAAGAAGCGACTATGATCAGTATTCCTCTGGAGGGA 2136
Query 2364 GCCAGTTATCCATCACACGGTGAGATGTACGAAGTTGTTCTCTACTTTGGAGTCATTGAC 2423
||| |||| ||| ||||| ||| | |||||||| ||||| || |||||| ||||||||
Sbjct 2137 -CCAACTATCTATCTCACGGAGAGGTCTACGAAGTGGTTCTATATTTTGGAATCATTGAC 2195
Query 2424 ATCTTGCAAGACTACGACATAACCAAAAAGATCGAGCATGCGTATAAGTCACTGCAAGCC 2483
|| || ||||| |||||||||| ||| |||||||||||||| || ||||| || |||||
Sbjct 2196 ATATTACAAGATTACGACATAAGCAAGAAGATCGAGCATGCTTACAAGTCTCTACAAGCT 2255
Query 2484 GATCCTGCTTCGATCTCAGCTGTTGATCCTAAACTCTATTCAAAGA-GGTTCAGAGACTT 2542
||||| ||||| |||||||| |||||||| ||||| || |||| || |||||||||| ||
Sbjct 2256 GATCCGGCTTCAATCTCAGCCGTTGATCCCAAACTATACTCAA-GAAGGTTCAGAGATTT 2314
Query 2543 CATCAGTAGGATCTTCATTGAAGAGGGCTAA 2573
|||||| || |||||||| ||||| ||||||
Sbjct 2315 CATCAGCAGAATCTTCATCGAAGACGGCTAA 2345
> Ahg912037 jgi|Araly1|912037|Al_scaffold_0001_2291
Length=621
Score = 442 bits (239), Expect = 7e-123
Identities = 310/342 (91%), Gaps = 13/342 (4%)
Strand=Plus/Plus
Query 267 TGAGATTGAGGAACATTGTGAATCGAGGACTGGAGTGAAGATTCTCTGATGAGTGATTCa 326
||||||||| ||||||||||| ||||||| |||| || ||||||||||||||| |||
Sbjct 2 TGAGATTGAAGAACATTGTGAGTCGAGGAGTGGA-AGATTCTTCTCTGATGAGTGAATCA 60
Query 327 gaagaagacgaagaagaagaagaagctagtgaagtcattttaagcag---cgtcgttcag 383
||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 61 GAAGAAGAC---GAAGAAGAAGAAGCTAGTGAAGTCATTTTAAGCAGAAACGTCGTTGAG 117
Query 384 aagaagaagaagaagaaTCTGCGTTTCGGT---GA--A-GAAGTAGAGAGACGAGACGGT 437
|||||||||||||||||||||||||| ||| || | |||| ||||||||||||||||
Sbjct 118 AAGAAGAAGAAGAAGAATCTGCGTTTTGGTGAAGAGGAGGAAGAAGAGAGACGAGACGGT 177
Query 438 TTGGTGTTGTTAGCTCAATCTACTCCAATGGTGAGATCGAGATCTCAAGGAACGACTCGG 497
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 178 TTGGTGTTGTTAGCTCAATCTACTCAAATGGTGAGATCGAGATCTCAAGGAACGACTCGG 237
Query 498 CGCGTGACTCCCACGCCTTTAGTAGATGTTGAGAAGCCGCTACCAAACGGAGATCTTTAC 557
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 238 CGCGTGACTCCCACGCCTTTAGTTGATGTTGAGAAGCCGCTACCGAACGGAGATCTCTAC 297
Query 558 ATCGGAAGTTTCTCCGGTGGGTTTCCACATGGATCCGGGAAG 599
|||||||| |||||||| ||||||||||| |||||||| |||
Sbjct 298 ATCGGAAGCTTCTCCGGCGGGTTTCCACACGGATCCGGCAAG 339
Score = 296 bits (160), Expect = 6e-79
Identities = 172/178 (97%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 789 AAACACGGACATGGACAAAAGCGTTATGCAAATGGAGATTTTTATGAAGGTACTTGGAGA 848
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 AAACATGGTCATGGACAAAAGCGTTATGCAAATGGAGATTTTTATGAAGGTACTTGGAGA 399
Query 849 AGGAATCTACAAGATGGTAGAGGTAGGTATGTGTGGAGAAATGGGAATCAGTATACTGGA 908
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 400 AGGAATCTAAAAGATGGTAGAGGTAGGTATGTTTGGAGAAATGGGAATCAGTATACTGGA 459
Query 909 GAGTGGCGTAGTGGTGTGATTTCTGGGAAAGGTTTGCTTGTTTGGCCTAATGGGAATC 966
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 460 GAGTGGCGTAGCGGTGTGATTTCTGGGAAAGGTTTACTTGTTTGGCCTAATGGGAATC 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110423620255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5