BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22000.1
Length=2504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921560 jgi|Araly1|921560|scaffold_102841.1 905 0.0
Ahg921555 jgi|Araly1|921555|scaffold_102836.1 809 0.0
Ahg921218 jgi|Araly1|921218|scaffold_102499.1 632 3e-180
Ahg912339 jgi|Araly1|912339|Al_scaffold_0001_2593 544 2e-153
> Ahg921560 jgi|Araly1|921560|scaffold_102841.1
Length=1793
Score = 905 bits (490), Expect = 0.0
Identities = 669/752 (89%), Gaps = 25/752 (3%)
Strand=Plus/Plus
Query 349 TGGGTTGAGAACGCAGTTAATAGAGATGTTAAAGATTTAGATTTCACGCTCCTCTGGAGC 408
||||||||||||||||||||| | | ||| ||| |||||||||||| ||||||||||| |
Sbjct 1008 TGGGTTGAGAACGCAGTTAATCGCGGTGTGAAATATTTAGATTTCAAGCTCCTCTGGACC 1067
Query 409 GCAGCGCCTACAAGCTTTCCTAAGAGCCTTTACACATGTGACACGCTCGTTTGTTTAACT 468
|||| || ||||||| ||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1068 GCAGATCCCACAAGCTATCCTAAGAGCCTTTACACATGTGACACACTCGTTAGTTTAACT 1127
Query 469 CTATCCAACCAGATTCTGGTGGATGTGTCTTCCCCGGC-TAGTCTACCATCTCTCTTAGA 527
||||||||||||||||| |||||||| || |||||||| | | |||||||||||||| |
Sbjct 1128 CTATCCAACCAGATTCTAGTGGATGTTTCCTCCCCGGCTTCCT-TACCATCTCTCTTATA 1186
Query 528 TTTGAGTCTTCATTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTCTTATCAAG 587
|||| ||||||| ||||| |||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1187 TTTGGGTCTTCACTACGTTGTGTATAAAGACGAAGACTCTCTTGTTAGGCTTTTATCAAG 1246
Query 588 TTCCCCTGTTCTCAAGAGGCTGAGTGTGCATAGTCATGAGGATGACAACTTAAAAACCTT 647
||| ||| |||| ||| ||||| |||||||||| ||||||||||||||||| ||||||||
Sbjct 1247 TTCTCCTATTCTGAAGTGGCTGTGTGTGCATAGACATGAGGATGACAACTTGAAAACCTT 1306
Query 648 TACCGTGAAAGTTTCTTCCTTAGAATCATTAAATTATGATGAGAATTGGCTCAAG--GAT 705
||||||||||||||||||||||||||||||| ||||||||||||| | | | | |||
Sbjct 1307 TACCGTGAAAGTTTCTTCCTTAGAATCATTATATTATGATGAGAA-T-AATGAGGTTGAT 1364
Query 706 GAGGTAGAGGATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGAGGTTGATGATCTC 765
||||||| ||||||||||| | | || || | | |||| ||| ||||||||||
Sbjct 1365 GAGGTAGTGGATAATGAGG-T-A-GA-GT--T---TGATGA---AGA---TGATGATCTC 1409
Query 766 AATGGATCGTTGGTAATAGATTCCCCTGCATTAAAAGA-ATTGCACTTATCTGAGGTTTG 824
|||||||||||||| ||||||||||| ||||||||| | ||| |||||| |||||||||
Sbjct 1410 AATGGATCGTTGGTTATAGATTCCCCAGCATTAAAA-ATTTTGAACTTATATGAGGTTTG 1468
Query 825 GGACTATTGCTTGATAGAGAATATGTCTTTCCTTGACGAGGCATTCATCAGCAATGTTCC 884
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1469 GGACTATTGCTTGATAGAGAATATGTCTTTCCTTGATGTGGCATTCATCAGCAATGTTCC 1528
Query 885 TTACCCCGATGAAAAGTTTCTGAGATCTCTTTCTTCTGTCAAACATCTCTTCTTACTGTT 944
|||||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1529 TTACCCCGATGACAAGTTTCTGAGATCTCTTTCTTCTGTCATACATCTGTACTTACTGTT 1588
Query 945 TAGCAAATCAATGGTTGCATGCTGTAACGCCATCAAGTTCTCCTGGCTCATAGAGTTTTA 1004
|| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 1589 TACCAAATCAATGGTTGCATGCTGTAGCGCCATCGAGTTCTCCCGGCTCATAGAGTTTTA 1648
Query 1005 CTTTTTTCCA-ATTAGTTTGGTAGATTGGTTGATGCCGCTTATGTTTTTGCTTCAAAATT 1063
|||| ||||| || |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1649 CTTTCTTCCAGAT-AGTTTGGTAGATTGATTGATGCCACTTATGTTTTTGCTTCAAAATT 1707
Query 1064 CTCCTAAACTTAAAACTCCTACGATTGACAAT 1095
|||||||||||||||||| |||||||||||||
Sbjct 1708 CTCCTAAACTTAAAACTCTTACGATTGACAAT 1739
Score = 809 bits (438), Expect = 0.0
Identities = 537/585 (92%), Gaps = 6/585 (1%)
Strand=Plus/Plus
Query 180 ATGGCGTTATGTCTGG-CTGATGCTGCCTAAACTCGAGTTCAAAGACGAAGGCAGCGAGA 238
|||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||
Sbjct 2 ATGGCGTTATGTCTGGAC-GATGGTGCCTAGACTCGAGTTCAAAGACGAAGGCAGCGAGA 60
Query 239 GCGTTGGGTGGTTTATTAAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATTGTT 298
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GCGTTGGGTGGTTTATTGAGAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATGGTT 120
Query 299 TGATTGTCGAACTCGGTCCACATTGTCCTATTGACGTCGATGTCAGAAAGTGGGTTGAGA 358
||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 121 TGATTGTCGAAATCGGTCCACATTGTCCTTTTGACGTAGATGTTGGAAAGTGGGTTGAGA 180
Query 359 ACGCAGTTAATAGAGATGTTAAAGATTTAGATTTCACGCTCCTCTGGAGCGCAGCGCCTA 418
|||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||| |
Sbjct 181 ACGCAGTTAATAGAGATGTTGAAGATTTAGATTTCAAGCTCCTCTGGACCGCAGAGCCCA 240
Query 419 CAAGCTTTCCTAAGAGCCTTTACACATGTGACACGCTCGTTTGTTTAACTCTATCCAACC 478
|||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 CAAGATTTCCTAAGTGCCTTTACACATGTGACACGCTCGTTTATTTAACTCTATCCAACC 300
Query 479 AGATTCTGGTGGATGTGTCTTCCCCGGCTAGTC-T-ACCATCTCTCTTAGATTTGAGTCT 536
||||||| |||||||| || ||||||||| || | ||||||||||||| ||||||||||
Sbjct 301 AGATTCTAGTGGATGTTTCCTCCCCGGCT--TCCTTACCATCTCTCTTATATTTGAGTCT 358
Query 537 TCATTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTCTTATCAAGTTCCCCTGT 596
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 359 TCACTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTTTTATCAAGTTCTCCTAT 418
Query 597 TCTCAAGAGGCTGAGTGTGCATAGTCATGAGGATGACAACTTAAAAACCTTTACCGTGAA 656
||||||| |||||||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct 419 TCTCAAGTGGCTGAGTGTGCATAGACATGAGAATGACAACTTGAAAACCTTTACCGTGAA 478
Query 657 AGTTTCTTCCTTAGAATCATTAAATTATGATGAGAATTGGCTCAAGGATGAGGTAGAGGA 716
||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||||
Sbjct 479 AGTTTCTTCTTTAGAATCATTTTATTATGATGATAATTGGCTCAAGAATGAGGTAGAGGA 538
Query 717 TAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGAGGTTGATGA 761
||||||| |||||||||||| || | ||| |||||||| | ||||
Sbjct 539 TAATGAGATTGATGAGGTAGAGGTTGATGCGGTAGAGGATAATGA 583
Score = 327 bits (177), Expect = 2e-88
Identities = 240/268 (90%), Gaps = 13/268 (5%)
Strand=Plus/Plus
Query 703 GATGAGGTAGAGGATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGA-G--G-T--- 755
|||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 564 GATGCGGTAGAGGATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGAGGTTGATGAA 623
Query 756 --TGATGATCTCAATGGATCGTTGGTAATAGATTCCCCTGCATTAAAAGAA-TTGCACTT 812
||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||
Sbjct 624 GATGATGATCTCAATGGATCGTTGGTAATAGATTCCCCTGCTTTAAAA-AATTTGCAGTT 682
Query 813 ATCTGAGGTTTGGGACTATTGCTTGATAGAGAATATGTCTTTCCTTGACGAGGCATTCAT 872
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 683 ATATGAGGTTTGGGACTATTGCTTGATAGAGAATATGTCTTTCCTTGATGAGGCATTCAT 742
Query 873 CAGCAATGTTCCTTACCCCGATGAAAAGTTTCTGAGATCTCTTTCTTCTGTCAAACATCT 932
|| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 743 CAACAATGTTCCAAACCCCGATGACAAGTTTCTGAGATCTCTTTCTTCTGTCATACATCT 802
Query 933 CTTCTTACTGTTT-AGCAAATCAATGGT 959
| ||| | ||| | ||||||||||||
Sbjct 803 GTACTTG-TATTTGACCAAATCAATGGT 829
Score = 178 bits (96), Expect = 2e-43
Identities = 127/141 (90%), Gaps = 6/141 (4%)
Strand=Plus/Plus
Query 958 GTTGCATGCTGTAACGCCATCAAGTTCTCCTGGCTCATAGAGTTTTACTTTTT--TCCA- 1014
|||||||||||||||||||||||||||||| ||||||||||||| || |||| ||||
Sbjct 870 GTTGCATGCTGTAACGCCATCAAGTTCTCCCGGCTCATAGAGTT--ACATTTTCATCCAG 927
Query 1015 ATTAGTTTGGTAGATTGGTTGATGCCGCTTATGTTTTTGCTTCAAAATTCTCCTAAACTT 1074
|| | ||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 928 ATGA-TTTAGTAGATTGGTTGATGCCACTTATTTTTTTGCTTCAAAATTCTCCTCAACTT 986
Query 1075 AAAACTCCTACGATTGACAAT 1095
||||||| |||||||||||||
Sbjct 987 AAAACTCTTACGATTGACAAT 1007
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1255 ACAGTGGAGATCTCCCTCTTAGCAACCTG 1283
|||||||||||||||||||||||||||||
Sbjct 1740 ACAGTGGAGATCTCCCTCTTAGCAACCTG 1768
> Ahg921555 jgi|Araly1|921555|scaffold_102836.1
Length=1316
Score = 809 bits (438), Expect = 0.0
Identities = 537/585 (92%), Gaps = 6/585 (1%)
Strand=Plus/Plus
Query 180 ATGGCGTTATGTCTGG-CTGATGCTGCCTAAACTCGAGTTCAAAGACGAAGGCAGCGAGA 238
|||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||
Sbjct 2 ATGGCGTTATGTCTGGAC-GATGGTGCCTAGACTCGAGTTCAAAGACGAAGGCAGCGAGA 60
Query 239 GCGTTGGGTGGTTTATTAAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATTGTT 298
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GCGTTGGGTGGTTTATTGAGAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATGGTT 120
Query 299 TGATTGTCGAACTCGGTCCACATTGTCCTATTGACGTCGATGTCAGAAAGTGGGTTGAGA 358
||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 121 TGATTGTCGAAATCGGTCCACATTGTCCTTTTGACGTAGATGTTGGAAAGTGGGTTGAGA 180
Query 359 ACGCAGTTAATAGAGATGTTAAAGATTTAGATTTCACGCTCCTCTGGAGCGCAGCGCCTA 418
|||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||| |
Sbjct 181 ACGCAGTTAATAGAGATGTTGAAGATTTAGATTTCAAGCTCCTCTGGACCGCAGAGCCCA 240
Query 419 CAAGCTTTCCTAAGAGCCTTTACACATGTGACACGCTCGTTTGTTTAACTCTATCCAACC 478
|||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 CAAGATTTCCTAAGTGCCTTTACACATGTGACACGCTCGTTTATTTAACTCTATCCAACC 300
Query 479 AGATTCTGGTGGATGTGTCTTCCCCGGCTAGTC-T-ACCATCTCTCTTAGATTTGAGTCT 536
||||||| |||||||| || ||||||||| || | ||||||||||||| ||||||||||
Sbjct 301 AGATTCTAGTGGATGTTTCCTCCCCGGCT--TCCTTACCATCTCTCTTATATTTGAGTCT 358
Query 537 TCATTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTCTTATCAAGTTCCCCTGT 596
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 359 TCACTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTTTTATCAAGTTCTCCTAT 418
Query 597 TCTCAAGAGGCTGAGTGTGCATAGTCATGAGGATGACAACTTAAAAACCTTTACCGTGAA 656
||||||| |||||||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct 419 TCTCAAGTGGCTGAGTGTGCATAGACATGAGAATGACAACTTGAAAACCTTTACCGTGAA 478
Query 657 AGTTTCTTCCTTAGAATCATTAAATTATGATGAGAATTGGCTCAAGGATGAGGTAGAGGA 716
||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||||
Sbjct 479 AGTTTCTTCTTTAGAATCATTTTATTATGATGATAATTGGCTCAAGAATGAGGTAGAGGA 538
Query 717 TAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGAGGTTGATGA 761
||||||| |||||||||||| || | ||| |||||||| | ||||
Sbjct 539 TAATGAGATTGATGAGGTAGAGGTTGATGCGGTAGAGGATAATGA 583
Score = 531 bits (287), Expect = 1e-149
Identities = 372/411 (91%), Gaps = 13/411 (3%)
Strand=Plus/Plus
Query 958 GTTGCATGCTGTAACGCCATCAAGTTCTCCTGGCTCATAGAGTTTTAC-TTTT-TTCCA- 1014
|||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||
Sbjct 870 GTTGCATGCTGTAACGCCATCAAGTTCTCCCGGCTCATAGAG--TTACATTTTCATCCAG 927
Query 1015 ATTAGTTTGGTAGATTGGTTGATGCCGCTTATGTTTTTGCTTCAAAATTCTCCTAAACTT 1074
|| | ||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 928 ATGA-TTTAGTAGATTGGTTGATGCCACTTATTTTTTTGCTTCAAAATTCTCCTCAACTT 986
Query 1075 AAAACTCCTACGATTGACAATGACTTCGAGTGTCTCTCACTTTCCTGGAACCAGCCGAGT 1134
||||||| ||||||||||||| |||||||| ||||| ||||||||||||| |||||| ||
Sbjct 987 AAAACTCTTACGATTGACAATAACTTCGAGGGTCTCCCACTTTCCTGGAATCAGCCG-GT 1045
Query 1135 -TCTATTCCCGGATGCTTGTTGTCTCATCTAGAGACCTTTAGGTGGAGAGGCTATGGAGG 1193
|||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||
Sbjct 1046 ATCTATTCCCGGATGCTTGTTGTCTCATCTAGAGATCTTTAGGTGGGGAGACTATGGAGG 1105
Query 1194 AAGAGAAGATGCGAAAAAACTACTGATGACATACATTCTCGCTAACTCAAAGTGTTTAAA 1253
||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1106 AAGAGAAGATGAGAAACAACTA---ATGACATACATTCTGGCTAACTCAAAGTGTTTAAA 1162
Query 1254 GACAGTGGAGATCTCCCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTAAA 1313
|||||| ||||| |||||||||||||| |||||||||||||| | |||| |||||||| |
Sbjct 1163 GACAGTCGAGATATCCCTCTTAGCAACTTGCAATCTTGAAGACATACAAGAGGAGTTAGA 1222
Query 1314 ATCTATGCCTAGGATTTCA-CAATCATCTCAACTTCTAATCTCCACTAAAA 1363
||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1223 ATCTATGCCTAGGGTTTCAACA-TCATCTCAACTTCTAATCTCCACTAAAA 1272
Score = 327 bits (177), Expect = 2e-88
Identities = 240/268 (90%), Gaps = 13/268 (5%)
Strand=Plus/Plus
Query 703 GATGAGGTAGAGGATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGA-G--G-T--- 755
|||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 564 GATGCGGTAGAGGATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGAGGTTGATGAA 623
Query 756 --TGATGATCTCAATGGATCGTTGGTAATAGATTCCCCTGCATTAAAAGAA-TTGCACTT 812
||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||
Sbjct 624 GATGATGATCTCAATGGATCGTTGGTAATAGATTCCCCTGCTTTAAAA-AATTTGCAGTT 682
Query 813 ATCTGAGGTTTGGGACTATTGCTTGATAGAGAATATGTCTTTCCTTGACGAGGCATTCAT 872
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 683 ATATGAGGTTTGGGACTATTGCTTGATAGAGAATATGTCTTTCCTTGATGAGGCATTCAT 742
Query 873 CAGCAATGTTCCTTACCCCGATGAAAAGTTTCTGAGATCTCTTTCTTCTGTCAAACATCT 932
|| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 743 CAACAATGTTCCAAACCCCGATGACAAGTTTCTGAGATCTCTTTCTTCTGTCATACATCT 802
Query 933 CTTCTTACTGTTT-AGCAAATCAATGGT 959
| ||| | ||| | ||||||||||||
Sbjct 803 GTACTTG-TATTTGACCAAATCAATGGT 829
> Ahg921218 jgi|Araly1|921218|scaffold_102499.1
Length=6049
Score = 632 bits (342), Expect = 3e-180
Identities = 439/483 (91%), Gaps = 17/483 (4%)
Strand=Plus/Plus
Query 1714 CATGGTGAGGAACTTCTGATGAAATTACAAGATGCCATTGATGAGAATGAAGCTAGGAAA 1773
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 4840 CATGGTGAGGAAATTCTGATGAAATTACAAGATGCCATTGATGAGAATGAAGCAAGGAAA 4899
Query 1774 AAGGCACAATCCAGCCAATTAAAGAGAACTAAAGAGCTGGAGGATAAAATATTGGAACTG 1833
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4900 AAGGCAGAATCCAGCCAATTAAAGAGAACTAAAGAGCTGGAGGATAAAATATTGGAATTG 4959
Query 1834 GAAGCTGATCGACAATCTGTTATCTATGATAAACGTGAGAAAACCACGGCTTATGACATG 1893
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 4960 GAGGCTGATCGACAATCTGTTATCTATGATAAACGTGAGAAAACAACGGCTTATGACATG 5019
Query 1894 ATGAAGGCAGAGCTGGATTGCTCATTATTAAGCCTTGAGTGCTGCAAAGAAGAAAAACAG 1953
|||||||||||| ||||||| ||| |||| |||||||||||||||||||| |||||||||
Sbjct 5020 ATGAAGGCAGAGTTGGATTGTTCACTATTGAGCCTTGAGTGCTGCAAAGAGGAAAAACAG 5079
Query 1954 AAGCTTGAAGCTATTCTGCAACAATGCAAAGAGGAGAGTTTGAAAATGTCCAAAGAGCTA 2013
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 5080 AAGCTTGAAGCTATTCTACAGCAATGCAAAGAGGAGAGTTTGAAAATGTCCAAAGAGCTA 5139
Query 2014 GGATCAAGGAGAGAATTAGTACAACGTTGCAGCTCTCATAAAAATATTGAGATGGAAGAA 2073
| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 5140 GAATCAAGGAGAGAATTAGTACAACGTTGTAGCTCTCACAAAAATATTGAGATGGAAGAA 5199
Query 2074 AATGATAGATTGGACATGGATGATCAAATGTCGGAGTTGGATGACAATAA-TACAACTGC 2132
||||||||||| | ||||| | | ||||||||||| |||||| || ||||| |||
Sbjct 5200 AATGATAGATTAAATATGGAGG-T-----GTCGGAGTTGGCTGACAA-AAGTACAATTGC 5252
Query 2133 AGTCTCTTCAGGCGA-------ACCA-TAAGCAAAGGAAAGTTACTTGTTTTGATCAT-C 2183
||||||||||||||| | || | |||||||| ||||| |||||||||||| | |
Sbjct 5253 AGTCTCTTCAGGCGACTTGGTGAACAATGAGCAAAGGGAAGTTGCTTGTTTTGATCCTAC 5312
Query 2184 AGT 2186
|||
Sbjct 5313 AGT 5315
Score = 257 bits (139), Expect = 2e-67
Identities = 151/157 (96%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 1402 CTTGAAGTCTTAAAGTCTGAGCTAGAGTCTTCCATGGCTAAAAGTAGAGCTCTTGGTGAT 1461
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 4282 CTTGAAGTCTTAAAGTCTGAACTAGAGTCTTCCATGGCTAAAAGTAGAGCTCTTGCTAAT 4341
Query 1462 AGAAATGATGAAATGTCAGTTGAACTCGAAGAGCACGCAACTAGGGATGAGAATGCAGAA 1521
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4342 AGAAATGATGAAATGTCAGTTGAACTCGAAGAGCATGCAACTAGGGATGAGAATGCAGAA 4401
Query 1522 AGAAGTTACTCTAAGAGAAGCTTATGTGCTCCTGAGG 1558
||||||| |||| ||||||||||||||||||||||||
Sbjct 4402 AGAAGTTGCTCTGAGAGAAGCTTATGTGCTCCTGAGG 4438
Score = 219 bits (118), Expect = 1e-55
Identities = 138/148 (93%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 1553 CTGAGGCGGAAATTACAGTTGAGAAACTAAAAGATAAACTAACCGCGCTATATGGGCAAG 1612
|||| ||||||||||||||||||| |||||| ||||||||||| | ||| | |||| |||
Sbjct 4505 CTGAAGCGGAAATTACAGTTGAGATACTAAATGATAAACTAACTGGGCTGTGTGGGAAAG 4564
Query 1613 GTGCCAGTGAGCTTGAAACACTGAAAAATAGGTGCAGTGATCTCACTCAGAAGCTCTCTG 1672
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 4565 GTGCCAGTGAGCTTGAAACACTGAAGAATAGGTGCAGTGATCTCACTCAGAAGCTCTCTG 4624
Query 1673 AGCAGATTTTGAAAACAGAAGAGTTCAA 1700
||||||||||||||||||| ||||||||
Sbjct 4625 AGCAGATTTTGAAAACAGAGGAGTTCAA 4652
Score = 100 bits (54), Expect = 4e-20
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 2247 AAGATGATAATAATTTAGACACCAGATTTCCAGGTTTGGAACAGGAGCTGATACAGTTGC 2306
||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 5540 AAGATGATAATGATTCAGACACCAGATTTCCGGGTTTGGAACAGGAGCTGATACAGTTGC 5599
Query 2307 GTGAGG 2312
|| |||
Sbjct 5600 GTCAGG 5605
> Ahg912339 jgi|Araly1|912339|Al_scaffold_0001_2593
Length=549
Score = 544 bits (294), Expect = 2e-153
Identities = 451/523 (86%), Gaps = 26/523 (5%)
Strand=Plus/Plus
Query 847 ATGTCTTTCCTTGACGAGGCATTCATCAGCAATGTTCCTTACCCCGATGAAAAGTTTCTG 906
||||||| |||| | | |||| |||| ||||||||| | ||| |||||| ||||| |||
Sbjct 1 ATGTCTTGCCTTAATGTGGCACGCATCGGCAATGTTCATAACCTCGATGACAAGTTGCTG 60
Query 907 AGATCTCTTTCTTCTGTCAAACATCTCTTCTTACTGTTTAG-C-AAATCAATGGTTGCAT 964
||||||||||||||||||| |||||| | ||| ||||| | | |||||||||||||| |
Sbjct 61 AGATCTCTTTCTTCTGTCATACATCTGTACTT-GTGTTT-GACTAAATCAATGGTTGC-T 117
Query 965 -GCTGTAACGCCATCAAGTTCTCCT-GGCTCATAGAGTTTTACTTTTTTCCAA-TTAGTT 1021
||||||||||||||||||||| || |||| |||||||||| ||||||||||| || |||
Sbjct 118 AGCTGTAACGCCATCAAGTTCT-CTCGGCTTATAGAGTTTTGCTTTTTTCCAAGTT-GTT 175
Query 1022 -TGGTAGATTGGTT-GATGCCGCTTATG-TTTTTGCTTCAAAATTCTCCTAAACTTAAAA 1078
| ||||||||||| || || |||||| | ||| ||||||| |||||||||||| ||||
Sbjct 176 AT-GTAGATTGGTTGGA-ACCACTTATGATATTT-CTTCAAATTTCTCCTAAACTAAAAA 232
Query 1079 CTCCTACGATTGACAATGACTT-CGAGTGTCTCTCACTTTCCTGGAACCAGCCGAG---T 1134
||| ||||||||||| ||| || || ||||||| ||| ||| |||||||||||||| |
Sbjct 233 CTCTTACGATTGACACTGA-TTACGGGTGTCTCCCACCTTCGTGGAACCAGCCGAGTTCT 291
Query 1135 TCTATTCCCGGATGCTTGTTGTCTCATCTAGAGACCTTTAGGTGGAGAGGCTATGGAGGA 1194
|||| ||||| |||||||| |||||| |||||| |||| |||||||||| ||| |||||
Sbjct 292 TCTACTCCCGAATGCTTGTCATCTCATTTAGAGATCTTTGGGTGGAGAGGGTATCGAGGA 351
Query 1195 AGAGAAGATGCGAAAAAACTACTGATGACATACATTCTCGCTAACTCAAAGTGTTTAAAG 1254
||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 352 AGAGAAGATGCGAAACAACTA-T--TGACATACATTCTCGCTAACTCAAAGTGTTTAAAG 408
Query 1255 ACAGTGGAGATCTCCCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTAAAA 1314
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 409 ACAGTGGGGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTACAA 468
Query 1315 TCTATGCCTAGGATTTCA-CAATCATCTCAACTTCTAATCTCC 1356
||||||||||||| |||| || ||||| |||||||||| ||||
Sbjct 469 TCTATGCCTAGGAATTCAACA-TCATCCCAACTTCTAACCTCC 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94387627110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5