BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22010.1
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472434 jgi|Araly1|472434|fgenesh2_kg.1__2388__AT1G22010.1 484 2e-136
Ahg921145 jgi|Araly1|921145|scaffold_102426.1 287 6e-77
> Ahg472434 jgi|Araly1|472434|fgenesh2_kg.1__2388__AT1G22010.1
Length=370
Score = 484 bits (262), Expect = 2e-136
Identities = 335/371 (90%), Gaps = 2/371 (1%)
Strand=Plus/Plus
Query 1 ATGGTCGAAAAAGTATCCATCAAGCATGAAATCAACTACAATCCTAAACCTGAAGACGCA 60
|||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCCGAAAAAGTATCCCTCAAGCATGAAATCGACTACAATCCTAAACCTGAAGACGCA 60
Query 61 GGACGAATCAAAGTCTATGTGAGTATCCTAATGTCGGAAGATCCTATAAGAGATCGTCGA 120
||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||
Sbjct 61 GGAAGAATCAAAGTCTATGTGAGTATCCTAATATCGGAAGCTCCTATAAGAGATTTTCGA 120
Query 121 CCAATACTAACATTCTCTTTGCCTGCCAAAGAATTTCGGGATAGCTTCCCGAGTTATAGA 180
||| |||| |||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 121 CCAGTACTCGCATTCTCTTTGCCTGCCAAAGAATTTCGGGATAGCTTCACGAGGTATAGA 180
Query 181 TGGGAACAACTGAATTGCTTAGAGGACGATGAACGTATCGATGTCTCTCAGGTTGATTTA 240
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 181 TGGGAACAACTGAATTGCTTAGAGGATGATGAACGTCTCGATGTCTCTCAGGTTAATTTA 240
Query 241 GCGAGGAGGGAACTCAGTAGACTTGTCACCCACCTCATGTTATACTT-GCATAACTATCA 299
||||||| ||||||||||||||||||||| ||| ||||||| ||||| | ||||||||
Sbjct 241 GCGAGGACGGAACTCAGTAGACTTGTCACTCACGTCATGTTCTACTTTGT-TAACTATCT 299
Query 300 AGATTGTGCTCTGTCAATTTATATTACCTTTAAGTTCATTAGTCGTACTCGTGTTAGGAT 359
||||||| ||||||||||||||||||||||||| ||| ||||| ||| || || |||
Sbjct 300 AGATTGTATTCTGTCAATTTATATTACCTTTAAGCCCATGCGTCGTCCTCCTGCTATGAT 359
Query 360 TCTTGAACAGT 370
| ||||| |||
Sbjct 360 TGTTGAAGAGT 370
> Ahg921145 jgi|Araly1|921145|scaffold_102426.1
Length=727
Score = 287 bits (155), Expect = 6e-77
Identities = 279/337 (83%), Gaps = 15/337 (4%)
Strand=Plus/Plus
Query 10 AAAGTATCCATCAAGCATGAAATCAACTACAATCCTAAACCTGAAGACGCAGGACGAATC 69
||||||||| || | ||||||||| ||||||||||||| ||||||||| | ||| ||||
Sbjct 39 AAAGTATCCCTCGACCATGAAATCGACTACAATCCTAAGCCTGAAGACACGGGAAAAATC 98
Query 70 AAAGTCTATGTGAGTATCCTAATGTCGGAAGATCCTATAAGAGATCGTCG-ACCAATACT 128
|||||||||| ||||||||||||||||||||||||||||||||| |||| || | ||||
Sbjct 99 AAAGTCTATGCAAGTATCCTAATGTCGGAAGATCCTATAAGAGATTGTCGGAC-AGTACT 157
Query 129 A-ACATTCTCTTTGCCTGCCAAAGAATTTCGGGATAGCTTCCCGAGTTAT-AGATGGGAA 186
| |||||| |||||||||||||||||| ||||||||||| | || ||| | |||||||
Sbjct 158 CGA-ATTCTCCTTGCCTGCCAAAGAATTTTGGGATAGCTTCACAAGGTATCA-ATGGGAA 215
Query 187 CAACT-GAATTGCTTAGAGGACGATGAACGTATCGATGTCTCTCAGGTTGATT-TAGCGA 244
||||| || |||||||||||||||||||| | || || ||| ||||||||||| | || |
Sbjct 216 CAACTAGA-TTGCTTAGAGGACGATGAACATCTCAATCTCTTTCAGGTTGATTCT-GCAA 273
Query 245 GGAGGGAACTCAGTAGACTTGTCACCCACCTCATGTTATACTTGC--A-TAACT-ATCAA 300
||| |||||||| || || ||||| | ||||||| | || | | ||| | | ||
Sbjct 274 GGATGGAACTCACTACACGTGTCATTGATGTCATGTTTTTCTCGGTTAGTAATTCACCA- 332
Query 301 GATTGTGCTCTGTCAATTTATATTACCTTTAAGTTCA 337
||||||||| ||| | |||||||||||||||||||||
Sbjct 333 GATTGTGCTTTGTTATTTTATATTACCTTTAAGTTCA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17856815652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5