BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22015.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472435 jgi|Araly1|472435|fgenesh2_kg.1__2389__AT1G22015.1 2111 0.0
Ahg922987 jgi|Araly1|922987|scaffold_104268.1 1094 0.0
Ahg476947 jgi|Araly1|476947|fgenesh2_kg.2__2077__AT1G77810.1 789 0.0
> Ahg472435 jgi|Araly1|472435|fgenesh2_kg.1__2389__AT1G22015.1
Length=1342
Score = 2111 bits (1143), Expect = 0.0
Identities = 1268/1328 (95%), Gaps = 9/1328 (1%)
Strand=Plus/Plus
Query 30 TTAAAATTATACGTCTTAAAAGATTTCTTCTCTCTTCTCTGATCGTCTCTCTTTGTGTGC 89
||||||||||||||||| |||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct 1 TTAAAATTATACGTCTTGAAAGTTTTCTCCTCTCTTCTCTCATCGTGTCTCTTTGTGTGC 60
Query 90 TCACAATGAAGCACAACAACAAAGTCTCCAAGAGACTTACTATGACATGGGTTCCTCTTC 149
||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TCACAATGAAG--C-ACAACAAAGTCTCCAAGAGACTAACTATGACATGGGTTCCTCTTC 117
Query 150 TTTGCATTTCTTGCTTTTTCCTCGGAGCAATCTTCACCTCCAAATTACGATCAGCTTCGT 209
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 118 TTTGCATTTCTTGCTTTTTCCTCGGAGCAATCTTCACCTCCAAGTTACGATCAGCTTCGT 177
Query 210 CGGATTCCGGTAGCCAGCTCATTTTACAGCACCGGCGTGATCAGGAGCTT-AAGATTGTT 268
|||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 178 CGGATTCCGGTAGCCAGCTCATTTTACAGCACCGGCGTGACCAGGAG-TTAAAGATTGTT 236
Query 269 ACCCAAGATTATGCTCATGAGAAAAAGAAATCACAAGACAATGATGTAATGGAAGAGGTT 328
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 237 TCCCAAGATTATGCTCATGAGAAAAAAAAATCACAAGAAAAAGATGTAATGGAAGAGGTT 296
Query 329 TTAAAAACTCATAAAGCAATCGAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAG 388
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTAAAAACCCATAAAGCAATCGAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAG 356
Query 389 CTCTCTGCTACACATAGCCCTCAACAGATTGTGAATGTCTCAGCAACCAATTCTTCAACA 448
|||||| ||||||||| | |||||||||||||| ||| |||| |||||||||||||||||
Sbjct 357 CTCTCTACTACACATATCTCTCAACAGATTGTGGATGCCTCATCAACCAATTCTTCAACA 416
Query 449 GAAGGAAACCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGT 508
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 417 GAAGGAAACCAAAGGAACAAAGTTTTCATGGTGATTGGTATCAATACTGCATTTAGCAGT 476
Query 509 CGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTTGAGAAA 568
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 477 AGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAGGGGGAAAAGCTTGAGAAA 536
Query 569 TTGGAAAAAGAGAAGGGAATTGTCGTCAAATTTATGATTGGACACAGTTCAACGCCAAAC 628
|| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 537 TTAGAAAAAGAGAAAGGAATTGTCATCAAATTCATGATTGGACACAGTTCAACGCCAAAC 596
Query 629 AGTATGTTGGATAAGGAGATTGATTCAGAAGATGCTCAATACAACGATTTCTTTAGGCTG 688
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 597 AGTATATTGGATAAGGAAATTGATTCAGAAGATGCTCAATACAAAGATTTCTTTAGGCTG 656
Query 689 GATCATGTCGAAGGATATTACAATCTATCTGCAAAAACCAAAAGCTTCTTCTCTAGTGCA 748
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 657 GATCATGTCGAAGGATATTACAATCTGTCTGCAAAAACCAAAAGCTTCTTTTCTAGTGCA 716
Query 749 GTTGCAAAGTGGGATGCTGAGTTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTT 808
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTTGCAAAATGGGATGCTGAGTTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTT 776
Query 809 GGCACGCTTGCTTCCACATTAGCAAGTCACCGTTCTAAGCCAAGGGTCTACATTGGATGT 868
|| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 777 GGTACGCTTGCTTCCACATTAGCTAGGCACCGTTCTAAGCCAAGGGTCTATATTGGATGT 836
Query 869 ATGAAATCCGGTCCTGTCCTTACCAAAAAGACGGCCAAGTACCGTGAACCCGAGTTTTGG 928
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 ATGAAATCCGGTCCTGTCCTTACTAAAAAGACGGCCAAGTACCGTGAACCCGAGTTTTGG 896
Query 929 AAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATA 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATA 956
Query 989 TCAAAGGATCTTGCCACATACATATCTAACAACCAGCCAATTTTGCATAAGTATGCAAAT 1048
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 957 TCAAAGGATCTTGCCACATACATATCCAACAACCAGCCAATTTTGCATAAGTATGCAAAT 1016
Query 1049 GAAGATGTGACACTCGGGTCATGGTTTATCGGTCTTGAGGTTGAGCAAATCGATGATCGT 1108
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1017 GAAGATGTGACACTCGGGTCATGGTTCATCGGTCTTGAGGTTGAGCAAATCGATGATCGT 1076
Query 1109 AATTTCTGTTGTGGTACTCCTCCAGACTGTGAAATGAGGGCAGAGGCTGGCGAAATGTGT 1168
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1077 AATTTCTGTTGTGGTACTCCTCCAGACTGTGAAATAAGGGCAGAGGCTGGAGAAATGTGT 1136
Query 1169 GTGGC-TACATTTGACTGGAAGTGTAGTGGAGTATGCAGATCAGTCGATAGAATGTGGAT 1227
||||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1137 GTGGCGT-CATTCGACTGGAAGTGTAGTGGAGTATGCAGATCAGTTGATAGAATGTGGAT 1195
Query 1228 GGTTCATGTGATGTGTGGTGAAGGT-AGTAAAGCTGTGTGGGACGCAAATTTAAAACTCT 1286
|||||||||||||||||| |||||| | ||||||||||| |||||| |||||||||||||
Sbjct 1196 GGTTCATGTGATGTGTGGCGAAGGTGA-TAAAGCTGTGTCGGACGCGAATTTAAAACTCT 1254
Query 1287 CTTAGATCGGAGAAAGACACAAGAGAAGATGAACATTTTGTTTTGTAAAGAACCAAAAGG 1346
||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1255 CTTAGATCGGAGAAAGAGACAAGAGGAGATGAACATTTTGTTTTGTAAAGAATTAAAAGG 1314
Query 1347 TATACAAA 1354
||||||||
Sbjct 1315 TATACAAA 1322
> Ahg922987 jgi|Araly1|922987|scaffold_104268.1
Length=739
Score = 1094 bits (592), Expect = 0.0
Identities = 665/701 (95%), Gaps = 2/701 (0%)
Strand=Plus/Plus
Query 111 AAGTCTCCAAGAGACTTACTATGACATGGGTTCCTCTTCTTTGCATTTCTTGCTTTTTCC 170
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AAGTCTCCAAGAGACTAACTATGACATGGGTTCCTATTCTTTGCATTTCTTGCTTTTTCC 60
Query 171 TCGGAGCAATCTTCACCTCCAAATTACGATCAGCTTCGTCGGATTCCGGTAGCCAGCTCA 230
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 61 TCGGAGCAATCTTCACCTCCAAATTGCGATCAGCGTCTTCGGATTCCGGTAGCCAGCTCA 120
Query 231 TTTTACAGCACCGGCGTGATCAGG-AGCTTAAGATTGTTACCCAAGATTATGCTCATGAG 289
|||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 121 TTTTACAGCACCGGTGTGATCAGGAAG-TTAAGATTGTTACCCAAGATTATGCTCATGAG 179
Query 290 AAAAAGAAATCACAAGACAATGATGTAATGGAAGAGGTTTTAAAAACTCATAAAGCAATC 349
||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 180 AAAAAAAAATCAGAAGACAAAGATGTAATGGAAGAGGTTTTAAAAACCCATAAAGCAATC 239
Query 350 GAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAGCTCTCTGCTACACATAGCCCT 409
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 240 GAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAGCTCTCTACTACACATAGCTCA 299
Query 410 CAACAGATTGTGAATGTCTCAGCAACCAATTCTTCAACAGAAGGAAACCAAAAGAACAAA 469
||||||||| || ||| | || |||||||||||||||||||||||||||||| ||| |||
Sbjct 300 CAACAGATTCTGGATGCCACATCAACCAATTCTTCAACAGAAGGAAACCAAAGGAAGAAA 359
Query 470 GTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGTCGAAAACGTCGCGATTCGCTT 529
||||| ||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct 360 GTTTTCATGGTTATTGGTATCAATACTGCATTTAGTAGTAGAAAACGTCGTAATTCGCTT 419
Query 530 AGAGAGACTTGGATGCCTCAAGGGGAAAAGCTTGAGAAATTGGAAAAAGAGAAGGGAATT 589
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 420 AGAGAGACTTGGATGCCTCAGGGGGAAAAGCTTGAGAAATTAGAAAAAGAGAAAGGAATT 479
Query 590 GTCGTCAAATTTATGATTGGACACAGTTCAACGCCAAACAGTATGTTGGATAAGGAGATT 649
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 480 GTCATCAAATTTATGATTGGACACAGTTCAACGCCAAACAGTATATTGGATAAGGAAATT 539
Query 650 GATTCAGAAGATGCTCAATACAACGATTTCTTTAGGCTGGATCATGTCGAAGGATATTAC 709
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 540 GATTCAGAAGATGCTCAATACAAAGATTTCTTTAGGCTGGATCATGTCGAAGGATATTAC 599
Query 710 AATCTATCTGCAAAAACCAAAAGCTTCTTCTCTAGTGCAGTTGCAAAGTGGGATGCTGAG 769
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 AATCTATCTGCAAAAACCAAAAGCTTCTTTTCTAGTGCAGTTGCAAAGTGGGATGCTGAG 659
Query 770 TTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTTGG 810
|||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTTGG 700
> Ahg476947 jgi|Araly1|476947|fgenesh2_kg.2__2077__AT1G77810.1
Length=1637
Score = 789 bits (427), Expect = 0.0
Identities = 944/1184 (80%), Gaps = 74/1184 (6%)
Strand=Plus/Plus
Query 108 ACAAAGTCTCCAAGAGACT--TA-CTATGACATGGGTTCC-TCTTCTTTGCATTTCTTGC 163
||||||||||||| ||| | || || ||| ||||||||| | |||| ||||| |||| |
Sbjct 105 ACAAAGTCTCCAAAAGAGTAATATCTCTGAAATGGGTTCCAT-TTCTCTGCATCTCTTTC 163
Query 164 TTTTTC-CTCGGAGCAATCTTCACCTCCAAATTACGATCAG-CTTCGTCGGATTCCGGTA 221
|| | |||||||||||||||||||||| | | | || | ||||| |||||||| |
Sbjct 164 -TTCGCTCTCGGAGCAATCTTCACCTCCAGGTCATG-GGAGCCGTCGTCAGATTCCGGAA 221
Query 222 GCCAGCTCATTTTACAGCACCGGCGTGATCAGGAGCTTAAGATTGTTACCCA-A-GATTA 279
| ||||| |||| ||||| ||| |||||||| || ||| |||||| || || | ||||
Sbjct 222 GTCAGCTAATTTCACAGCTCCGTCGTGATCATGAACTTCAGATTG-TA-TCAGACGATTG 279
Query 280 TGCTCATGA-GAAAAAGAAATCACAAGACAATGATGTAATGGAAGAGGTTTTAAAAACTC 338
| ||||| | |||||| | | ||||| || |||||||| || | ||||| | |||||
Sbjct 280 TTCTCATAATAAAAAAGCTA-CTCAAGAAAAAGATGTAATTGACCAAGTTTTGACAACTC 338
Query 339 ATAAAGCAAT-C-----GA-A--TCATTGGATAAGTCAGTTTCTATGCTTCAGAA-GCAG 388
| ||||||| | || | || ||||||||||| ||||||| |||| | || ||||
Sbjct 339 ACGAAGCAATACAGGGTGACAGGTCGTTGGATAAGTCGGTTTCTACGCTTGA-AATGCAG 397
Query 389 CT--CTCTGCTACACATAG-CC-CTCAACAGATTGTGAATGTC-TCAGCAACCAATTCTT 443
| | || ||||| | || || ||| | ||| || | || | ||||||| ||||
Sbjct 398 TTGGC-CT-CTACA-A-AGACCTCTC-A-AGA-TG-G---CTCGGAAACAACCAACTCTT 446
Query 444 CAACAGAAGGAAA-CCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTT 502
||| | | |||| || | ||| ||||| |||||||| || || |||||||| ||||||
Sbjct 447 TAACGGGA-GAAACCCCGAGGAAGAAAGTGTTTATGGTAATGGGAATCAATACCGCATTT 505
Query 503 AGCAGTCGAAAACGTCGCGATTC-GCTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCT 561
|||||| ||||||| || ||||| | ||||||| || ||||||||||||||||| |||||
Sbjct 506 AGCAGTAGAAAACGGCGTGATTCAG-TTAGAGAAACCTGGATGCCTCAAGGGGAGAAGCT 564
Query 562 TGAGAAATTGGAAAAAGAGAAGGGAATTGTCGTCAAATTTATGATTGGACACAGTTCAAC 621
||| ||| | ||| |||| |||||||||||| |||| || ||||||||||||||| | ||
Sbjct 565 TGAAAAACTAGAACAAGACAAGGGAATTGTCATCAAGTTCATGATTGGACACAGTGCGAC 624
Query 622 GCCAAACAGTATGTTGGATAAGGAG--ATTGATTCAGAAGATGCTCAATACAACGATTTC 679
| |||| ||||| |||||| | ||| ||||||||||||||||||||| |||| || |||
Sbjct 625 GTCAAATAGTATATTGGAT-A-GAGCTATTGATTCAGAAGATGCTCAACACAAAGACTTC 682
Query 680 TTTAGGCTGGATCATGTCGAAGGATATTAC-AATCTATCTGCAAAAACCAAAAGCTTCTT 738
|||||||||| ||||| ||||||||| || || || || ||||||||||| | |||||
Sbjct 683 CTTAGGCTGGAGCATGTTGAAGGATATCACGAA-CTCTCAGCAAAAACCAAGATATTCTT 741
Query 739 CTCTAGTGCAGTT-GCAAAGTGGGATGCTGAGTTTTATGTCAAGATTGATGATGATGTTC 797
|| | |||| || ||||| |||||||| ||||| ||| ||||| | ||||||||||| |
Sbjct 742 TTCCACTGCA-TTAGCAAAATGGGATGCAGAGTTCTATATCAAGGTCGATGATGATGTAC 800
Query 798 ACGTCAATCTTGGCACGCTTGCTTCCACA-TTAGCAAGTCACCGTTCTAAGCCAAGGGTC 856
|||||||||| || | ||| ||||||||| || || ||||||| || ||||| ||||||
Sbjct 801 ACGTCAATCTCGGTATGCTGGCTTCCACACTT-GCCCGTCACCGCTCAAAGCCGAGGGTC 859
Query 857 TACATTGGATGTATGAAATCCGGTCCTGTCCTTAC-CAAAAAGACGGCCAAGTACCGTGA 915
|| ||||| ||||||||||| || ||||| ||| | | ||||||| | ||||||| |||
Sbjct 860 TATATTGGGTGTATGAAATCAGGGCCTGTTCTTGCTC-AAAAGACAGTAAAGTACCATGA 918
Query 916 ACCCGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATA-TTTCCGACATGCTACGGGAC 974
||| |||| ||||||||||||||| || ||||||||||| ||| ||||||||||| ||||
Sbjct 919 ACCTGAGTATTGGAAATTTGGAGAGGATGGTAACAAATACTTT-CGACATGCTACAGGAC 977
Query 975 AGATTTATGCCATATCAAAGGATCTTGCCACATACATATCTAACAACCAGCCAATTTTGC 1034
|||| |||||||| || ||||||||||||| ||||||||| | |||||||||||||||||
Sbjct 978 AGATCTATGCCATCTCGAAGGATCTTGCCAAATACATATCCATCAACCAGCCAATTTTGC 1037
Query 1035 ATAAGTATGCAAATGAAGATGTGACACTCGGGTCATGGTTTATCGGTCTTGAGGTTGAGC 1094
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |
Sbjct 1038 ATAAGTATGCAAATGAAGATGTGTCTTTGGGGTCATGGTTTATCGGTCTTGAGGTTGAAC 1097
Query 1095 AAATCGATGATCGTAA-TTTCTGTTGTGGTACTCCTCCAGACTGTGAAATG-AGGGCAGA 1152
| || ||||| || || ||| |||||||| ||||||||||| ||| | ||| | ||||||
Sbjct 1098 ATATTGATGACCGCAACTTT-TGTTGTGGGACTCCTCCAGATTGT-AGATGGAAGGCAGA 1155
Query 1153 GGCTGGCGAAATGTGTGTGGC-TACATTTGACTGGAAG-TGTAGTGG-AGTATGCA-GAT 1208
||| ||||| |||||||||| | |||| || |||| | |||||||| | | |||| | |
Sbjct 1156 GGCGGGCGATGTGTGTGTGGCCT-CATTCGAATGGA-GCTGTAGTGGGATT-TGCAAG-T 1211
Query 1209 CAGTCGATAGAATGTGGATGGTTCATGT-GATGTGTGGTGAAGG 1251
| || || |||||| ||| || |||| | | ||| |||||||
Sbjct 1212 CGGTAGAGAGAATGAAGATAGTGCATGAAG-TATGTAGTGAAGG 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5