BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22015.1 Length=1514 Score E Sequences producing significant alignments: (Bits) Value Ahg472435 jgi|Araly1|472435|fgenesh2_kg.1__2389__AT1G22015.1 2111 0.0 Ahg922987 jgi|Araly1|922987|scaffold_104268.1 1094 0.0 Ahg476947 jgi|Araly1|476947|fgenesh2_kg.2__2077__AT1G77810.1 789 0.0 > Ahg472435 jgi|Araly1|472435|fgenesh2_kg.1__2389__AT1G22015.1 Length=1342 Score = 2111 bits (1143), Expect = 0.0 Identities = 1268/1328 (95%), Gaps = 9/1328 (1%) Strand=Plus/Plus Query 30 TTAAAATTATACGTCTTAAAAGATTTCTTCTCTCTTCTCTGATCGTCTCTCTTTGTGTGC 89 ||||||||||||||||| |||| ||||| ||||||||||| ||||| ||||||||||||| Sbjct 1 TTAAAATTATACGTCTTGAAAGTTTTCTCCTCTCTTCTCTCATCGTGTCTCTTTGTGTGC 60 Query 90 TCACAATGAAGCACAACAACAAAGTCTCCAAGAGACTTACTATGACATGGGTTCCTCTTC 149 ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 TCACAATGAAG--C-ACAACAAAGTCTCCAAGAGACTAACTATGACATGGGTTCCTCTTC 117 Query 150 TTTGCATTTCTTGCTTTTTCCTCGGAGCAATCTTCACCTCCAAATTACGATCAGCTTCGT 209 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 118 TTTGCATTTCTTGCTTTTTCCTCGGAGCAATCTTCACCTCCAAGTTACGATCAGCTTCGT 177 Query 210 CGGATTCCGGTAGCCAGCTCATTTTACAGCACCGGCGTGATCAGGAGCTT-AAGATTGTT 268 |||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||| Sbjct 178 CGGATTCCGGTAGCCAGCTCATTTTACAGCACCGGCGTGACCAGGAG-TTAAAGATTGTT 236 Query 269 ACCCAAGATTATGCTCATGAGAAAAAGAAATCACAAGACAATGATGTAATGGAAGAGGTT 328 ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 237 TCCCAAGATTATGCTCATGAGAAAAAAAAATCACAAGAAAAAGATGTAATGGAAGAGGTT 296 Query 329 TTAAAAACTCATAAAGCAATCGAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAG 388 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TTAAAAACCCATAAAGCAATCGAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAG 356 Query 389 CTCTCTGCTACACATAGCCCTCAACAGATTGTGAATGTCTCAGCAACCAATTCTTCAACA 448 |||||| ||||||||| | |||||||||||||| ||| |||| ||||||||||||||||| Sbjct 357 CTCTCTACTACACATATCTCTCAACAGATTGTGGATGCCTCATCAACCAATTCTTCAACA 416 Query 449 GAAGGAAACCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGT 508 ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 417 GAAGGAAACCAAAGGAACAAAGTTTTCATGGTGATTGGTATCAATACTGCATTTAGCAGT 476 Query 509 CGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTTGAGAAA 568 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 477 AGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAGGGGGAAAAGCTTGAGAAA 536 Query 569 TTGGAAAAAGAGAAGGGAATTGTCGTCAAATTTATGATTGGACACAGTTCAACGCCAAAC 628 || ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 537 TTAGAAAAAGAGAAAGGAATTGTCATCAAATTCATGATTGGACACAGTTCAACGCCAAAC 596 Query 629 AGTATGTTGGATAAGGAGATTGATTCAGAAGATGCTCAATACAACGATTTCTTTAGGCTG 688 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 597 AGTATATTGGATAAGGAAATTGATTCAGAAGATGCTCAATACAAAGATTTCTTTAGGCTG 656 Query 689 GATCATGTCGAAGGATATTACAATCTATCTGCAAAAACCAAAAGCTTCTTCTCTAGTGCA 748 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 657 GATCATGTCGAAGGATATTACAATCTGTCTGCAAAAACCAAAAGCTTCTTTTCTAGTGCA 716 Query 749 GTTGCAAAGTGGGATGCTGAGTTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTT 808 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 GTTGCAAAATGGGATGCTGAGTTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTT 776 Query 809 GGCACGCTTGCTTCCACATTAGCAAGTCACCGTTCTAAGCCAAGGGTCTACATTGGATGT 868 || |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct 777 GGTACGCTTGCTTCCACATTAGCTAGGCACCGTTCTAAGCCAAGGGTCTATATTGGATGT 836 Query 869 ATGAAATCCGGTCCTGTCCTTACCAAAAAGACGGCCAAGTACCGTGAACCCGAGTTTTGG 928 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 837 ATGAAATCCGGTCCTGTCCTTACTAAAAAGACGGCCAAGTACCGTGAACCCGAGTTTTGG 896 Query 929 AAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATA 988 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 AAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATA 956 Query 989 TCAAAGGATCTTGCCACATACATATCTAACAACCAGCCAATTTTGCATAAGTATGCAAAT 1048 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 957 TCAAAGGATCTTGCCACATACATATCCAACAACCAGCCAATTTTGCATAAGTATGCAAAT 1016 Query 1049 GAAGATGTGACACTCGGGTCATGGTTTATCGGTCTTGAGGTTGAGCAAATCGATGATCGT 1108 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1017 GAAGATGTGACACTCGGGTCATGGTTCATCGGTCTTGAGGTTGAGCAAATCGATGATCGT 1076 Query 1109 AATTTCTGTTGTGGTACTCCTCCAGACTGTGAAATGAGGGCAGAGGCTGGCGAAATGTGT 1168 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1077 AATTTCTGTTGTGGTACTCCTCCAGACTGTGAAATAAGGGCAGAGGCTGGAGAAATGTGT 1136 Query 1169 GTGGC-TACATTTGACTGGAAGTGTAGTGGAGTATGCAGATCAGTCGATAGAATGTGGAT 1227 ||||| | |||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1137 GTGGCGT-CATTCGACTGGAAGTGTAGTGGAGTATGCAGATCAGTTGATAGAATGTGGAT 1195 Query 1228 GGTTCATGTGATGTGTGGTGAAGGT-AGTAAAGCTGTGTGGGACGCAAATTTAAAACTCT 1286 |||||||||||||||||| |||||| | ||||||||||| |||||| ||||||||||||| Sbjct 1196 GGTTCATGTGATGTGTGGCGAAGGTGA-TAAAGCTGTGTCGGACGCGAATTTAAAACTCT 1254 Query 1287 CTTAGATCGGAGAAAGACACAAGAGAAGATGAACATTTTGTTTTGTAAAGAACCAAAAGG 1346 ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| Sbjct 1255 CTTAGATCGGAGAAAGAGACAAGAGGAGATGAACATTTTGTTTTGTAAAGAATTAAAAGG 1314 Query 1347 TATACAAA 1354 |||||||| Sbjct 1315 TATACAAA 1322 > Ahg922987 jgi|Araly1|922987|scaffold_104268.1 Length=739 Score = 1094 bits (592), Expect = 0.0 Identities = 665/701 (95%), Gaps = 2/701 (0%) Strand=Plus/Plus Query 111 AAGTCTCCAAGAGACTTACTATGACATGGGTTCCTCTTCTTTGCATTTCTTGCTTTTTCC 170 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 AAGTCTCCAAGAGACTAACTATGACATGGGTTCCTATTCTTTGCATTTCTTGCTTTTTCC 60 Query 171 TCGGAGCAATCTTCACCTCCAAATTACGATCAGCTTCGTCGGATTCCGGTAGCCAGCTCA 230 ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct 61 TCGGAGCAATCTTCACCTCCAAATTGCGATCAGCGTCTTCGGATTCCGGTAGCCAGCTCA 120 Query 231 TTTTACAGCACCGGCGTGATCAGG-AGCTTAAGATTGTTACCCAAGATTATGCTCATGAG 289 |||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| Sbjct 121 TTTTACAGCACCGGTGTGATCAGGAAG-TTAAGATTGTTACCCAAGATTATGCTCATGAG 179 Query 290 AAAAAGAAATCACAAGACAATGATGTAATGGAAGAGGTTTTAAAAACTCATAAAGCAATC 349 ||||| |||||| ||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 180 AAAAAAAAATCAGAAGACAAAGATGTAATGGAAGAGGTTTTAAAAACCCATAAAGCAATC 239 Query 350 GAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAGCTCTCTGCTACACATAGCCCT 409 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 240 GAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAGCTCTCTACTACACATAGCTCA 299 Query 410 CAACAGATTGTGAATGTCTCAGCAACCAATTCTTCAACAGAAGGAAACCAAAAGAACAAA 469 ||||||||| || ||| | || |||||||||||||||||||||||||||||| ||| ||| Sbjct 300 CAACAGATTCTGGATGCCACATCAACCAATTCTTCAACAGAAGGAAACCAAAGGAAGAAA 359 Query 470 GTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGTCGAAAACGTCGCGATTCGCTT 529 ||||| ||||| ||||||||||||||||||||||| ||| |||||||||| |||||||| Sbjct 360 GTTTTCATGGTTATTGGTATCAATACTGCATTTAGTAGTAGAAAACGTCGTAATTCGCTT 419 Query 530 AGAGAGACTTGGATGCCTCAAGGGGAAAAGCTTGAGAAATTGGAAAAAGAGAAGGGAATT 589 |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| Sbjct 420 AGAGAGACTTGGATGCCTCAGGGGGAAAAGCTTGAGAAATTAGAAAAAGAGAAAGGAATT 479 Query 590 GTCGTCAAATTTATGATTGGACACAGTTCAACGCCAAACAGTATGTTGGATAAGGAGATT 649 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 480 GTCATCAAATTTATGATTGGACACAGTTCAACGCCAAACAGTATATTGGATAAGGAAATT 539 Query 650 GATTCAGAAGATGCTCAATACAACGATTTCTTTAGGCTGGATCATGTCGAAGGATATTAC 709 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 540 GATTCAGAAGATGCTCAATACAAAGATTTCTTTAGGCTGGATCATGTCGAAGGATATTAC 599 Query 710 AATCTATCTGCAAAAACCAAAAGCTTCTTCTCTAGTGCAGTTGCAAAGTGGGATGCTGAG 769 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 600 AATCTATCTGCAAAAACCAAAAGCTTCTTTTCTAGTGCAGTTGCAAAGTGGGATGCTGAG 659 Query 770 TTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTTGG 810 ||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTTGG 700 > Ahg476947 jgi|Araly1|476947|fgenesh2_kg.2__2077__AT1G77810.1 Length=1637 Score = 789 bits (427), Expect = 0.0 Identities = 944/1184 (80%), Gaps = 74/1184 (6%) Strand=Plus/Plus Query 108 ACAAAGTCTCCAAGAGACT--TA-CTATGACATGGGTTCC-TCTTCTTTGCATTTCTTGC 163 ||||||||||||| ||| | || || ||| ||||||||| | |||| ||||| |||| | Sbjct 105 ACAAAGTCTCCAAAAGAGTAATATCTCTGAAATGGGTTCCAT-TTCTCTGCATCTCTTTC 163 Query 164 TTTTTC-CTCGGAGCAATCTTCACCTCCAAATTACGATCAG-CTTCGTCGGATTCCGGTA 221 || | |||||||||||||||||||||| | | | || | ||||| |||||||| | Sbjct 164 -TTCGCTCTCGGAGCAATCTTCACCTCCAGGTCATG-GGAGCCGTCGTCAGATTCCGGAA 221 Query 222 GCCAGCTCATTTTACAGCACCGGCGTGATCAGGAGCTTAAGATTGTTACCCA-A-GATTA 279 | ||||| |||| ||||| ||| |||||||| || ||| |||||| || || | |||| Sbjct 222 GTCAGCTAATTTCACAGCTCCGTCGTGATCATGAACTTCAGATTG-TA-TCAGACGATTG 279 Query 280 TGCTCATGA-GAAAAAGAAATCACAAGACAATGATGTAATGGAAGAGGTTTTAAAAACTC 338 | ||||| | |||||| | | ||||| || |||||||| || | ||||| | ||||| Sbjct 280 TTCTCATAATAAAAAAGCTA-CTCAAGAAAAAGATGTAATTGACCAAGTTTTGACAACTC 338 Query 339 ATAAAGCAAT-C-----GA-A--TCATTGGATAAGTCAGTTTCTATGCTTCAGAA-GCAG 388 | ||||||| | || | || ||||||||||| ||||||| |||| | || |||| Sbjct 339 ACGAAGCAATACAGGGTGACAGGTCGTTGGATAAGTCGGTTTCTACGCTTGA-AATGCAG 397 Query 389 CT--CTCTGCTACACATAG-CC-CTCAACAGATTGTGAATGTC-TCAGCAACCAATTCTT 443 | | || ||||| | || || ||| | ||| || | || | ||||||| |||| Sbjct 398 TTGGC-CT-CTACA-A-AGACCTCTC-A-AGA-TG-G---CTCGGAAACAACCAACTCTT 446 Query 444 CAACAGAAGGAAA-CCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTT 502 ||| | | |||| || | ||| ||||| |||||||| || || |||||||| |||||| Sbjct 447 TAACGGGA-GAAACCCCGAGGAAGAAAGTGTTTATGGTAATGGGAATCAATACCGCATTT 505 Query 503 AGCAGTCGAAAACGTCGCGATTC-GCTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCT 561 |||||| ||||||| || ||||| | ||||||| || ||||||||||||||||| ||||| Sbjct 506 AGCAGTAGAAAACGGCGTGATTCAG-TTAGAGAAACCTGGATGCCTCAAGGGGAGAAGCT 564 Query 562 TGAGAAATTGGAAAAAGAGAAGGGAATTGTCGTCAAATTTATGATTGGACACAGTTCAAC 621 ||| ||| | ||| |||| |||||||||||| |||| || ||||||||||||||| | || Sbjct 565 TGAAAAACTAGAACAAGACAAGGGAATTGTCATCAAGTTCATGATTGGACACAGTGCGAC 624 Query 622 GCCAAACAGTATGTTGGATAAGGAG--ATTGATTCAGAAGATGCTCAATACAACGATTTC 679 | |||| ||||| |||||| | ||| ||||||||||||||||||||| |||| || ||| Sbjct 625 GTCAAATAGTATATTGGAT-A-GAGCTATTGATTCAGAAGATGCTCAACACAAAGACTTC 682 Query 680 TTTAGGCTGGATCATGTCGAAGGATATTAC-AATCTATCTGCAAAAACCAAAAGCTTCTT 738 |||||||||| ||||| ||||||||| || || || || ||||||||||| | ||||| Sbjct 683 CTTAGGCTGGAGCATGTTGAAGGATATCACGAA-CTCTCAGCAAAAACCAAGATATTCTT 741 Query 739 CTCTAGTGCAGTT-GCAAAGTGGGATGCTGAGTTTTATGTCAAGATTGATGATGATGTTC 797 || | |||| || ||||| |||||||| ||||| ||| ||||| | ||||||||||| | Sbjct 742 TTCCACTGCA-TTAGCAAAATGGGATGCAGAGTTCTATATCAAGGTCGATGATGATGTAC 800 Query 798 ACGTCAATCTTGGCACGCTTGCTTCCACA-TTAGCAAGTCACCGTTCTAAGCCAAGGGTC 856 |||||||||| || | ||| ||||||||| || || ||||||| || ||||| |||||| Sbjct 801 ACGTCAATCTCGGTATGCTGGCTTCCACACTT-GCCCGTCACCGCTCAAAGCCGAGGGTC 859 Query 857 TACATTGGATGTATGAAATCCGGTCCTGTCCTTAC-CAAAAAGACGGCCAAGTACCGTGA 915 || ||||| ||||||||||| || ||||| ||| | | ||||||| | ||||||| ||| Sbjct 860 TATATTGGGTGTATGAAATCAGGGCCTGTTCTTGCTC-AAAAGACAGTAAAGTACCATGA 918 Query 916 ACCCGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATA-TTTCCGACATGCTACGGGAC 974 ||| |||| ||||||||||||||| || ||||||||||| ||| ||||||||||| |||| Sbjct 919 ACCTGAGTATTGGAAATTTGGAGAGGATGGTAACAAATACTTT-CGACATGCTACAGGAC 977 Query 975 AGATTTATGCCATATCAAAGGATCTTGCCACATACATATCTAACAACCAGCCAATTTTGC 1034 |||| |||||||| || ||||||||||||| ||||||||| | ||||||||||||||||| Sbjct 978 AGATCTATGCCATCTCGAAGGATCTTGCCAAATACATATCCATCAACCAGCCAATTTTGC 1037 Query 1035 ATAAGTATGCAAATGAAGATGTGACACTCGGGTCATGGTTTATCGGTCTTGAGGTTGAGC 1094 ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| | Sbjct 1038 ATAAGTATGCAAATGAAGATGTGTCTTTGGGGTCATGGTTTATCGGTCTTGAGGTTGAAC 1097 Query 1095 AAATCGATGATCGTAA-TTTCTGTTGTGGTACTCCTCCAGACTGTGAAATG-AGGGCAGA 1152 | || ||||| || || ||| |||||||| ||||||||||| ||| | ||| | |||||| Sbjct 1098 ATATTGATGACCGCAACTTT-TGTTGTGGGACTCCTCCAGATTGT-AGATGGAAGGCAGA 1155 Query 1153 GGCTGGCGAAATGTGTGTGGC-TACATTTGACTGGAAG-TGTAGTGG-AGTATGCA-GAT 1208 ||| ||||| |||||||||| | |||| || |||| | |||||||| | | |||| | | Sbjct 1156 GGCGGGCGATGTGTGTGTGGCCT-CATTCGAATGGA-GCTGTAGTGGGATT-TGCAAG-T 1211 Query 1209 CAGTCGATAGAATGTGGATGGTTCATGT-GATGTGTGGTGAAGG 1251 | || || |||||| ||| || |||| | | ||| ||||||| Sbjct 1212 CGGTAGAGAGAATGAAGATAGTGCATGAAG-TATGTAGTGAAGG 1254 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56678284560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5