BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22020.1
Length=2374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472436 jgi|Araly1|472436|fgenesh2_kg.1__2390__AT1G22020.1 3467 0.0
Ahg922779 jgi|Araly1|922779|scaffold_104060.1 835 0.0
Ahg922988 jgi|Araly1|922988|scaffold_104269.1 462 4e-129
> Ahg472436 jgi|Araly1|472436|fgenesh2_kg.1__2390__AT1G22020.1
Length=2335
Score = 3467 bits (1877), Expect = 0.0
Identities = 2233/2392 (93%), Gaps = 75/2392 (3%)
Strand=Plus/Plus
Query 1 AATTCTCTTCTTCTCATCCATAGCTTCCGACGAGAGAGAAGAAGCAAAGCAAAATTCGAT 60
||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 1 AATTCTCTTCTTCTCATCCATAGCTTCCGAC----GAG-AGAAG--AAGCAAAATTCGAT 53
Query 61 CGCTCTGGGTTTTTGATCTTTTAGGGTTTCTG-GCAAATTTGGATGGAAACCTCAACTTT 119
||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||
Sbjct 54 TGCTCTGGGTTTTTGATCTTTTAGGGTTTCTGTG-AAATTTGGATGGAAACTTCAACCTT 112
Query 120 ATCCAAAGATAATCATAAAGGAAGAAGCTTTCGTTGTTGTTTCCATTGT-TGCAGCTCCT 178
||| |||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 113 ATCTAAAGATAATCATAAAGGAAGAAGCTTTC---ATTGTTTCCATTGTAT-CAGCTCCT 168
Query 179 TCAAAAACTCTTGTCTCTATTGCTTTCACAGCTAAGAATTCTCGATTCCATCGTTGTCGT 238
||||||||||||||||||||||||||||||||| | || || | || || ||||
Sbjct 169 TCAAAAACTCTTGTCTCTATTGCTTTCACAGCT-A-AA-----GAAT---TC-TTCTCGT 217
Query 239 TTTCGATTTTGACGAAATTGGGTTCTTCTAGATTTTGGTTATGGACCGTATAGCTCAATC 298
||||||||||| | |||||||||||||||| ||| ||||||||| ||||| ||||||||
Sbjct 218 TTTCGATTTTG-GGGAATTGGGTTCTTCTAGGTTTAGGTTATGGATCGTATTGCTCAATC 276
Query 299 AGATCTCTCTTTAGGATTCGGTAGCTCCCACGCTTTACCTCTACCTCATCCTCCTAGAAT 358
||||||||||||||||||||||||||||||||| | | ||||||||||||| |||||
Sbjct 277 AGATCTCTCTTTAGGATTCGGTAGCTCCCACGC--T---T-TACCTCATCCTCCGAGAAT 330
Query 359 CCCAATCGCTGATGACTCAATCACGCTTCAGATTGATTCCAGCTTCCGTCCTTCGTCTAA 418
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 331 CCCAATTGCTGATGACTCAATCACGCTTCAGATTGATTCTAGCTTCCGTCCTTCGTCTAA 390
Query 419 TCCTATGCCTCCTGTTCCTCTTCAGTTACTTGAGCAGAGATTCGATGTCACCGGATCCTG 478
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||
Sbjct 391 TCCTATGCCTCCTGTTCCGCTTCAGTTGCTTGAGCAGAGATTCGATGTTACCGGATCGTG 450
Query 479 TAGCCGAGTTGTTGAGGAGGACGATGAGGTTGTTGGTGATAATGATGATGATGATCAAAG 538
||||||||| |||||||| |||||||| |||||||||||| ||||||| |||||| | |
Sbjct 451 TAGCCGAGTCGTTGAGGAAGACGATGATGTTGTTGGTGATTATGATGAAGATGAT-GATG 509
Query 539 A-GA--AGAGGAGCAATTTATTCTCTTGGGTCATCCTATGAAGTTGAAACGAGGTAGAGG 595
| || | | | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 510 ATGATCA-AAG-GCAATTTATTCTCTTGGGTCATCCTATGAAGTTGAAACGATGTAGAGG 567
Query 596 TGGGAATTCGTATTCATTGGCATCATCAAGTCCTTGTAAGAGATTTGTAGTTGATTCAGG 655
||||||||| |||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 568 TGGGAATTCATATTCAATGTCATCATCAA------GTAAGAGATTTGTAGTTGATTCAGG 621
Query 656 GATTGAAAGTAGGCGAGCTGTTGTTAGAGCTTGGGGTAATCAGTCGATTGAAGAAGCTGA 715
||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 622 GATTGAAGGTAGACGAGCCGCCGTTAGAGCTTGGGGTAATCAGTCGATTGAAGAAGCTGA 681
Query 716 TCCTGAGATTCATGAGTTTATGGAAAAGGAGAAGCAGAGACAATTTAGAGGTATTGAGCT 775
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 682 TCCTGAGATTCATGAGTTTATGGAAAAGGAAAAGCAGAGACAGTTTAGAGGTATTGAGCT 741
Query 776 TATAGCTTCTGAGAATTTCGTGTGTAGAGCTGTGATGGAAGCTTTAGGAAGTCATTTGAC 835
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 742 TATAGCTTCTGAGAATTTCGTGTGTAGAGCGGTGATGGAAGCTTTAGGAAGTCATTTGAC 801
Query 836 TAATAAGTACTCTGAAGGAATGCCTGGAGCTAGATACTATACGGGGAATCAGTATATTGA 895
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 802 TAATAAGTACTCTGAAGGAATGCCTGGAGCTAGATACTACATGGGGAATCAGTATATTGA 861
Query 896 TCAGATTGAGATTCTTTGCCAAGAGCGTGCGCTTGCAGCTTTTGGAC-TAAATCATGAGA 954
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 862 TCAGATTGAGATTCTTTGCCAAGAGCGTGCGCTTGCAGCTTTTGGACTTCAA-CATGAGA 920
Query 955 AATGGGGAGTTAATGTGCAGCCTTATTCGTGCACTTCTGCCAATTTCGCTGTTTTCACTG 1014
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 921 AATGGGGAGTTAATGTGCAGCCTTATTCGTGCACTTCCGCCAATTTCGCTGTTTTCGCTG 980
Query 1015 GTCTTTTGATGCCCGGTGAACGAATTATGGGATTGGATTCTCCCTCAGGTGGTCATATGA 1074
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 GTCTTTTGATGCCTGGTGAACGAATTATGGGATTGGATTCTCCCTCAGGTGGTCATATGA 1040
Query 1075 GTCATGGGTATTATACACCAGGTGGGAAGAAAGTCTCTGGTGCGTCTATATTCTTTGAGA 1134
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1041 GTCATGGGTATTACACGCCAGGTGGAAAGAAAGTCTCTGGTGCGTCTATATTCTTTGAGA 1100
Query 1135 GCTTTCCATATAAGGTTGACCCTCGTACAGGGTATATTGATTACGATAAGCTTGAGGAAA 1194
| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1101 GTTTTCCGTATAAGGTTGATCCTCGTACAGGGTATATTGATTATGATAAGCTTGAGGAAA 1160
Query 1195 AGGCGCTTGACTATCGTCCTAAGATACTTATTTGTGGTGGGAGTTCATATCCGAGGGACT 1254
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1161 AGGCGCTTGACTATCGTCCCAAGATACTTATTTGTGGTGGGAGTTCATATCCGAGAGACT 1220
Query 1255 GGGAATTCCCTAGGTTTAGGCATATTGCAGACAAATGTGGAGCTGTTTTGATGTTTGACA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 GGGAATTCCCTAGGTTTAGGCATATTGCAGACAAATGTGGAGCTGTTTTGATGTTTGACA 1280
Query 1315 TGGCACAGATTAGTGGTCTTGTCGCTGCCAAGGAAAGTCCAAATCCATTCGATTATTGCG 1374
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1281 TGGCACAGATTAGCGGTCTTGTGGCTGCCAAGGAAAGTCCAAATCCATTCGATTATTGCG 1340
Query 1375 ATATTGTTACCTCAACAACACACAAGTCTCTCCGTGGCCCTAGGGGCGGCATCATATTTT 1434
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1341 ATATTGTTACCTCGACAACACACAAGTCTCTCCGTGGACCTAGGGGCGGCATCATATTTT 1400
Query 1435 ACAAGAGAGGCTTGAAGCCCAAGAAGCAAAGCATAAATCTTAATCACTGTGAGAGCAATA 1494
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1401 ACAGGAGAGGCTTGAAGCCCAAGAAGCAAAGCATGAATCTTAATCACTGTGAGAGCAATA 1460
Query 1495 TCCAGTATGATTTTGAAGAAAAAATCAACTTTTCTGTCTTTCCATCGTTGCAAGGGGGGC 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1461 TCCAGTATGATTTTGAAGAAAAAATCAACTTTTCTGTCTTTCCATCGTTGCAAGGCGGGC 1520
Query 1555 CTCACAATAACCATATAGCTGCTCTAGCCATTGCCCTCAAGCAGGCCGCTTCACCAGAGT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 CTCACAATAACCATATAGCTGCTCTAGCCATTGCCCTCAAGCAGGCCGCTTCACCAGAGT 1580
Query 1615 ACAAGCTTTACATGCGACAGGTCaaaaaaaaTGCTAAGGCTTTAGCATCTGCTTTGATAA 1674
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1581 ACAAGCTTTACATGCGACAAGTAAAAAAAAATGCCAAGGCTTTAGCATCTGCTTTGATAA 1640
Query 1675 GCAGAAAGTGCAAGCTGATAACAGGTGGCACCGATAATCATTTGCTTCTCTGGGATCTGA 1734
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1641 GTAGAAAGTGCAAGTTGATAACAGGTGGCACCGATAATCATTTGCTTCTCTGGGATCTGA 1700
Query 1735 CTCCTTTGGGCTTGACAGGCAAGGTGTATGAGAAAGTTTGCGAGATGTGCCATATCACGG 1794
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 CTCCTTTGGGCTTGACAGGTAAGGTGTATGAGAAAGTTTGCGAGATGTGCCATATCACGG 1760
Query 1795 TCAACAAAGTGGCCATTTTCAGCGAAAACGGTGTTATTTCCCCTGGAGGAGTGAGAATAG 1854
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1761 TCAACAAAGTCGCCATTTTCAGCGAAAATGGTGTTATTTCCCCTGGAGGAGTGAGAATAG 1820
Query 1855 GCAGTCCGGCTATGACCTCAAGAGGTTGTTTAGAACCAGAATTTGAGACAATGGCTGATT 1914
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1821 GCAGTCCGGCTATGACCTCAAGAGGTTGTTTAGAACCAGAATTTGAGACAATGGCTGAGT 1880
Query 1915 TTCTATATAGAGCTGCTCAGATAGCTAGTGCTGCACAAAGGGAACACGGGAAGTTGCAAA 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 TTCTATATAGAGCTGCTCAGATAGCTAGTGCTGCACAAAGGGAACACGGGAAGTTGCAAA 1940
Query 1975 AGGAACCGCTCAAAAGCATCTATCACTGTAAAGAGATTGCAGATCTTCGGAACCAAGTCG 2034
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1941 AGGAACCGCTCAAAAGCATCTATCACTGTAAAGAGATTGCAGATCTTCGGAACCAAGTTG 2000
Query 2035 AAGCTTTTGCTACTCAGTTTGCAATGCCTGCCTTTGACATGTGAGTCAGCCTGAAGAACG 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 AAGCTTTTGCTACTCAGTTTGCAATGCCTGCCTTTGACATGTGAGTCAGCCTGAAGAACG 2060
Query 2095 AGACCAGCTCAATCTCTCT-TC----ATTTTTTGTTGCCATGGTAATC-----C-ATACA 2143
||||||||||||||||||| || |||||||||||||||||||||| | |||||
Sbjct 2061 AGACCAGCTCAATCTCTCTCTCTCTCATTTTTTGTTGCCATGGTAATCTAAATCCATACA 2120
Query 2144 CCCATTTCTCTGTTTTACAATGTCAACATTCCCTAAATTCTTAGTTTAATATTTGGGGGC 2203
||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 2121 CCCATTTCTCTATTTTACAATGTCAACATTCCCTAAATT----G----------GGGGA- 2165
Query 2204 AAAACAAACTTGTGTGTGTTTCTATGGTCGTTTATTCTTCAATGCGTGTGTACATAGACA 2263
||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 2166 AAAACAAACTTTTGTGAGTTGCTATGGTCGTTTATTCTTCAATGCTTGTGTACATAGACA 2225
Query 2264 TTGGG-CTGTGTTGGGTATTAGTGTATCCCTCTGTGTTCTTTTAGAATGGTAATAATAAT 2322
||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 2226 TTGGGGCTGTGTTGGGTATTAGTGTATCCCTTTGTGTTCTTTTAAAATGGTAATAATAAT 2285
Query 2323 GCAGTTGAAATTTATTTTTCTAGAAAAGGGAATGATATGCTTTCAAGATGTT 2374
||||||||||||| ||| ||||||||||||| |||| |||||||||||||
Sbjct 2286 GCAGTTGAAATTT-TTTGA-TAGAAAAGGGAATAATATTCTTTCAAGATGTT 2335
> Ahg922779 jgi|Araly1|922779|scaffold_104060.1
Length=1826
Score = 835 bits (452), Expect = 0.0
Identities = 1085/1385 (78%), Gaps = 66/1385 (5%)
Strand=Plus/Plus
Query 714 GATCCTGAGATTCATGAGTTTATGGA-AAAGGAGAAGCAGAGACAATTTAGAGGTATTGA 772
|||||||| ||||||||| ||||||| ||| |||||||| |||||| | ||||| |||||
Sbjct 433 GATCCTGATATTCATGAGCTTATGGAGAAA-GAGAAGCAAAGACAAGTAAGAGGAATTGA 491
Query 773 GCTT-ATAGCTTCTGAGAATTTCGTGTGTAGAGCTGTGATGGAAGCTTTAGGAAGTCATT 831
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 492 -ATTGATTGCTTCTGAGAATTTCGTGTGTAGAGCTGTAATGGAAGCTTTAGGTAGTCATT 550
Query 832 TGACTAATAAGTACTCTGAAGGAATGCCTGGAGCTAGATACTATACGGGGAATCAGTATA 891
|||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 551 TGACGAATAAATACTCTGAAGGTATGCCTGGAGCTAGATACTATACTGGGAATCAATATA 610
Query 892 TTGATCAGATTGAGATTCTTTGCCAA-GAGCGTGCGCTTGCAGCTTTTGGACTA-AATCA 949
||||||||||||||| ||| || | || | || ||| | || ||||| || ||||
Sbjct 611 TTGATCAGATTGAGAATCTGTGT-ATTGAAAGAGCTCTTACTGCGTTTGGTCTTGAATC- 668
Query 950 TGAGAAATGGGGAGTTAATGTGCAGCCTTATTCGTGCACTTCTGCCAATTTCGCTGTTT- 1008
||| |||||||| |||||||| ||||| ||||| || |||||||| ||||| || || |
Sbjct 669 TGATAAATGGGGTGTTAATGTTCAGCCGTATTCTTGTACTTCTGCTAATTTTGCGGTGTA 728
Query 1009 TCACTGGTCTTTTGAT-GCCCGGTGAACGAATTATGGGA-TTGGATTCTCCCTCAGGTGG 1066
| || || ||||| || ||| |||||||| |||||||| ||| ||||||| || |||||
Sbjct 729 T-ACCGGACTTTT-ATTGCCGGGTGAACGGATTATGGGGCTTG-ATTCTCCTTCTGGTGG 785
Query 1067 TCATATGAGTCATGGGTATTATACACCAGGTGGGAAGAA-AGTCTCTGG-TGCGTCTATA 1124
||||||||||||||||||| ||| || ||||||||||| | | || || ||| || ||
Sbjct 786 GCATATGAGTCATGGGTATTGTACTCCTGGTGGGAAGAAGATT-TC-GGCTGCTTCGATT 843
Query 1125 TTCTTTGAGAGCTTTCCATATAAGGTTGAC-CCTCGTACAGGGTATATTGATTACGATAA 1183
||||||||||| ||||| ||||| || || |||| || |||||||||||||| |||||
Sbjct 844 TTCTTTGAGAGTTTTCCTTATAAAGT-GAATCCTCAAACTGGGTATATTGATTATGATAA 902
Query 1184 GCTTGAGGAAAAGGCGCTTGACTATCGTCCTAAGATACTTATTTGTGGTGGGAGTTCATA 1243
|||||| || ||||||||||| || ||||| ||||| ||||||||||| |||||||| ||
Sbjct 903 GCTTGAAGATAAGGCGCTTGATTACCGTCCAAAGATTCTTATTTGTGGAGGGAGTTCTTA 962
Query 1244 TCCGAGGGACTGGGAATTCCCTAGGTTTAGGCATATTGCAGACAAATGTGGAGCTGTTTT 1303
||| ||||| ||||| || | ||| |||| || ||||||||||| ||||||||||||||
Sbjct 963 TCCTAGGGATTGGGATTTTGCAAGGGTTAGACAGATTGCAGACAAGTGTGGAGCTGTTTT 1022
Query 1304 GATGTTTGACATGGCACAGATTAGTGGTCTTGTCGCTGCC-AAGGAAAGTCCAAATCCAT 1362
||||| ||| ||||| || || || || ||||| || | | |||||| || |||||||||
Sbjct 1023 GATGTGTGATATGGCTCATATAAGCGGGCTTGTTGC-GACTAAGGAATGTTCAAATCCAT 1081
Query 1363 TCGATTATTGCGATATTGTTACCTCAACAACACACAA-GTCTCTCCGTGGCCCTAGGGGC 1421
| ||| | || || || |||||||| || || ||||| | ||| ||||| ||||| ||
Sbjct 1082 TTGATCACTGTGACATAGTTACCTCCACTACCCACAAAGG-TCTACGTGGTCCTAGAGGA 1140
Query 1422 GGCATCATATTTTACAAGAGAGGCTTGAAGCCCAAGAA-GCAAAGCATAAATCTTAATC- 1479
|| ||||| || |||| ||||||| ||| ||||| ||| || | | || || |
Sbjct 1141 GGTATCATCTTCTACAGGAGAGGCCCAAAGAT-AAGAAAGCAGGGCCTTCA-CTCAAGCC 1198
Query 1480 ACTGTGAGAGCAATATCCA-GTAT---GATTTTGAAGAAAAAATCAACTTTTCTGTCTTT 1535
| | ||| | | | |||| | || ||||| || ||||| ||||||||| |||| |||
Sbjct 1199 ATTCTGACA-C--T-TCCACGCATTACGATTTAGAGGAAAAGATCAACTTTGCTGTTTTT 1254
Query 1536 CCATCGTTGCAAGGGGGGCCTCACAATAACCATATAGCTGCTCTAGCCATTGCCCTCAAG 1595
|||||| | ||||| || || ||||| |||||||| || ||||| ||||||||| | ||
Sbjct 1255 CCATCGCTACAAGGAGGTCCACACAACAACCATATCGCAGCTCTTGCCATTGCCTTGAAA 1314
Query 1596 CAGGCCGCTTCACCAGAGTACAA-GCTTTACATGCGACAGGTCaaaaaaaaTGCT-AAGG 1653
|| | ||| | ||||||||||| |||| |||| | |||| | || ||||| || |||
Sbjct 1315 CAAGTGGCTACTCCAGAGTACAAAGCTT-ACATACAACAGATGAAGAAAAACGCCCAAG- 1372
Query 1654 CTTTAGCATCTGCTTTGATAAGCAGAAAGTGCA-AGCTGATAACAGGTGGCACCGATAAT 1712
|||||||| | ||| || | || ||||| |||| | ||| | ||||||||||| || ||
Sbjct 1373 CTTTAGCAGCAGCTCTGCTTAGAAGAAAATGCAGA-CTGGTTACAGGTGGCACAGACAAC 1431
Query 1713 CATTTGCTT-CTCTGGGATCTGACTCCTTTGGGCTTGACAGGCAAGGTGTATGAGAAAGT 1771
|||||| || || |||||||| |||||| ||||||| ||||| || || || ||||||||
Sbjct 1432 CATTTG-TTGCTGTGGGATCTCACTCCTATGGGCTTAACAGGGAAAGTCTACGAGAAAGT 1490
Query 1772 TTGCGAGATGTGCCATATCACGGTCAACAA-AGTGGCCATTTTCAGCGAAAACGGTGTTA 1830
||||||||||||||||| || | ||||| | || | || ||| | || || ||| |
Sbjct 1491 GTGCGAGATGTGCCATATAACCTTAAACAAGACTG-CTATATTCGGGGACAATGGTACAA 1549
Query 1831 TTTCCCCTGGAGGAGTGAGAATAGGCAGTCCGGCTATGACCTCAAGAGGTTGTTTAGAAC 1890
| || |||||||| || |||||||| | || || ||||| | |||| ||| ||||
Sbjct 1550 TATCTCCTGGAGGTGTAAGAATAGGGACACCTGCGATGACAACCCGAGGCTGTATAGAGT 1609
Query 1891 CAGAATTT-GAGACAATGGCTGATTTTCT-ATATAGAGCTGCTCAGATAGCTAGTGC-T- 1946
| || ||| ||||||||||| |||||||| ||| || || ||||||||| | ||||| |
Sbjct 1610 CTGA-TTTCGAGACAATGGCGGATTTTCTGATAAAG-GCGGCTCAGATAACGAGTGCGTT 1667
Query 1947 GCACAAAGGGAACACGGGAAGTTGCAAAAGGAACC-GCTCAAAAGCATCTAT-CACTGT- 2003
||| | || | || ||||||| || ||||| | | ||||| | ||| |||
Sbjct 1668 GCAGAGAGAG--CATGGGAAGTCACACAAGGAGTTTG-TGAAAAGT-T-TATGCACCAAC 1722
Query 2004 AAAGAGAT-TGCAGATCTTCGGAACCAAGTCGAAGCTTTTGCTACT-CAGTTTGCA-ATG 2060
||||| || | | || ||| | |||| |||||||||||||||| | |||| || | |||
Sbjct 1723 AAAGAAATAT-CTGAGCTTAGAAACCGAGTCGAAGCTTTTGCTT-TGCAGTATG-AGATG 1779
Query 2061 CCTGC 2065
|||||
Sbjct 1780 CCTGC 1784
> Ahg922988 jgi|Araly1|922988|scaffold_104269.1
Length=295
Score = 462 bits (250), Expect = 4e-129
Identities = 260/265 (98%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 1285 ACAAATGTGGAGCTGTTTTGATGTTTGACATGGCACAGATTAGTGGTCTTGTCGCTGCCA 1344
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ACAAATGTGGAGCTGTTTTGATGTTTGACATGGCACAGATTAGCGGTCTTGTCGCTGCCA 60
Query 1345 AGGAAAGTCCAAATCCATTCGATTATTGCGATATTGTTACCTCAACAACACACAAGTCTC 1404
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 AGGAAAGTCCAAATCCATTCGATTATTGTGATATTGTTACCTCAACAACACACAAGTCTC 120
Query 1405 TCCGTGGCCCTAGGGGCGGCATCATATTTTACAAGAGAGGCTTGAAGCCCAAGAAGCAAA 1464
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 TCCGTGGACCTAGGGGCGGCATCATATTTTACAGGAGAGGCTTGAAGCCCAAGAAGCAAA 180
Query 1465 GCATAAATCTTAATCACTGTGAGAGCAATATCCAGTATGATTTTGAAGAAAAAATCAACT 1524
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCATGAATCTTAATCACTGTGAGAGCAATATCCAGTATGATTTTGAAGAAAAAATCAACT 240
Query 1525 TTTCTGTCTTTCCATCGTTGCAAGG 1549
|||||||||||||||||||||||||
Sbjct 241 TTTCTGTCTTTCCATCGTTGCAAGG 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89435895260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5