BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22030.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912055 jgi|Araly1|912055|Al_scaffold_0001_2309 1504 0.0
Ahg316696 jgi|Araly1|316696|fgenesh1_pm.C_scaffold_2001729 435 5e-121
> Ahg912055 jgi|Araly1|912055|Al_scaffold_0001_2309
Length=1005
Score = 1504 bits (814), Expect = 0.0
Identities = 955/1018 (94%), Gaps = 29/1018 (3%)
Strand=Plus/Plus
Query 142 ATGGATCCGTCCTGTGCAAACTCAGTGAACGGATTCTACTCATTTCTAAACAGATCAATG 201
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCCGTCCTCTGCAAACTCAGTGAACGGATTCTACTCATTTCTAAACAGATCAATG 60
Query 202 GAAGATCTCGAAAGAGTTTATCTTTCAAACAATTTCATGTCCGTACACTTCTTACAGAGA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGATCTCGAAAGAGTTTATCTTTCAAACAATTTCATGTCCGTACACTTCTTACAGAGA 120
Query 262 GctctctgtcttctccgtacctctcactctcatctcactctctTAGTTCAAAAACTTCAA 321
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GCTCTCTGTCTTCTTCGTACCTCTCACTCACATCTCACTCTCTTAGTTCAAAAACTTCAA 180
Query 322 CTTCCCGTCGGTGACAAATGGCTCGATGAGTATATGGACGAAAGCTCCAAACTTTGGGAA 381
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CTTCCCGTCGGTGACAAATGGCTCGATGAGTATATGGACGAAAGCTCTAAACTTTGGGAA 240
Query 382 GCTTGTCTCGTCATCAAATCCGCCGTCTCCTCCGTCGAAAACTTCTCCTCCGCCGGAATT 441
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 241 GCTTGTCTCGTCATCAAATCCGCTGTCTCTTCCGTCGAAAACTTCTCCTCCGCCGGAATT 300
Query 442 TCGATCGC-T------TC------CA-C-CCTCGACCGTCGTCTCTCTCCTCAGCTTTCT 486
|| ||||| | || || | || | ||||||||||||||||||||||||||
Sbjct 301 TCAATCGCGTCGACACTCGATGGTCATCACCACCACCGTCGTCTCTCTCCTCAGCTTTCT 360
Query 487 CGTCAGGTGATAAGGGCGATATCAGGATGTAGAAGAGAAGCGATAGGGATAGAGGAAGAA 546
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CGTCAGGTGATAAGGGCAATATCAGGATGTAGAAGAGAAGCGATTGGGATAGAGGAAGAA 420
Query 547 AACAGAGCATTAATGGAGAA-CAGAGTTCAAAGGTTTCCGTTTTGGTCGGAACAAACGTC 605
|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 421 AACAGAGCTTTAATGGAGAATC-GAGTTCAAAGGTTTCCGTTTTGGTCGGAACAAACGTC 479
Query 606 GGCGACGGCGATGGAGTCGTCGACGAAGTTACAAAACGGGTTCAGTGGTTTTCGCGGCGT 665
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 GGCGACGGCGATAGAATCGTCGACGAAGTTACAAAACGGATTCAGTGGTTTTCGCGGCGT 539
Query 666 GCTTTACGCGACGAGGAACATGAGTTCGCTTCTCCTTATGGTTTTAATGAACGGTCTCGT 725
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTTTACGCGACTAGGAACATGAGTTCGCTTCTCCTTATGGTTTTAATGAACGGTCTCGT 599
Query 726 CTACTGTTTTCCCGGAGACGCGGCAACGCAAACGCAGACGCAGATAACGCAAACGCAGAG 785
||||||||| ||||| || | || | || ||||||||||||||||||||||||||||||
Sbjct 600 CTACTGTTTCCCCGGCGA--C-GC-A-GC-AACGCAGACGCAGATAACGCAAACGCAGAG 653
Query 786 TCAAGTCGGAGGTTTCGCCGGAGCAATGGGGAGGTTGCAGCAGAGAGTGGCGGCTGAGGT 845
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 654 TCAAGTCGGAGGTTTCGCCGGAGCTATGGGGAGGTTGCAGCAGAGAGTGGCGGCTGAGGT 713
Query 846 TGGGAGGATGGGGATAAGGAAAGGAATATTGATGCACGAGTATCGCCGGAGCAAAGCGGC 905
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 714 TGGGAGGATGGGGATAAGGAAAGGTATATTGATGCATGAGTATCGCCGGAGCAAAGCGGC 773
Query 906 GTTGGAGGAGCTTAAAGCGGAGCTGGAGCGGCGGTTCTGCGGTGGCGGTGGTGGTGGGgg 965
|||||||||||||||||| |||||||||||||| |||||| |||||||| || || ||
Sbjct 774 GTTGGAGGAGCTTAAAGCAGAGCTGGAGCGGCGATTCTGC---GGCGGTGGCGGCGGAGG 830
Query 966 agagagggaggaggaggaggaggacgagagggagctgagagagagagttgagaATCTGAA 1025
|| ||| || | ||| |||||||| |||| |||| ||||||||||||| |||||||||||
Sbjct 831 AG-GAGAGA-G-GGAAGAGGAGGAAGAGAAGGAGTTGAGAGAGAGAGTGGAGAATCTGAA 887
Query 1026 AGGGTATTTTGGTAATTTAAGGAATGGGACAGAGAGTATAGTGGCGCAAATCGATGATTT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AGGGTATTTTGGTAATTTAAGGAATGGGACAGAGAGTATAGTGGCGCAAATCGATGATTT 947
Query 1086 CTTCGATGAGATTGTTGAAGGAAGGAAAAAGCTTTTGGATTTCTGCAGCCATAGATGA 1143
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 948 CTTCGATGAAATTGTTGAAGGAAGAAAAAAGCTTTTGGATTTCTGCAGCCATAGATGA 1005
> Ahg316696 jgi|Araly1|316696|fgenesh1_pm.C_scaffold_2001729
Length=963
Score = 435 bits (235), Expect = 5e-121
Identities = 507/632 (80%), Gaps = 43/632 (7%)
Strand=Plus/Plus
Query 142 ATGGATCCGTCCTGTGCAAACTCAGTGAACGGATTCTACTCATTTCTAAACAGATCAATG 201
||||||| ||| ||| |||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1 ATGGATCAGTCTTGTACAAACTCAGTAAATGGATTCTACTCGTTTCTAAACAGATCAATG 60
Query 202 GAAGATCTCGAAAGAGTTTATCTTTCAAACAATTTCATGTCCGTACACTT-CTTACAGAG 260
|||||||||||||||||||||||||| ||||| ||||||||| |||| || || ||||||
Sbjct 61 GAAGATCTCGAAAGAGTTTATCTTTCCAACAACTTCATGTCCTTACAGTTTCT-ACAGAG 119
Query 261 AGctc-tctgtcttctccgtacctctcactctcatctcactct-ctTAGTTCAAAAACTT 318
|| | |||||||||| | |||||||||||||||||||| || ||| || || ||||||
Sbjct 120 AG-TGATCTGTCTTCTAAGAACCTCTCACTCTCATCTCACACTTCTT-GTCCAGAAACTT 177
Query 319 CAACTTCCC-GTCGGTGACAAATGGCTCGATGAGTATATGGACGAAAGCTCCAAACTTTG 377
||| |||| ||||||||||| |||||||| || || |||||||||| |||||| |||||
Sbjct 178 -AACCTCCCTGTCGGTGACAAGTGGCTCGACGACTACATGGACGAAACCTCCAAGCTTTG 236
Query 378 GGAAG-CTTGTCTCGTCATCAAATCCGCCGTCTCCTCCGTCGAAAACTTCTCCTCCGCCG 436
||| | || | | ||||||||||||||| |||||||| |||||| ||| | |||| |||
Sbjct 237 GGACGTCT-GCCACGTCATCAAATCCGCTATCTCCTCCATCGAAAGCTTTTGCTCCTCCG 295
Query 437 -GA-----ATT---TCGA---TCG-CTTCCAC--CCTCGACCGTCGTCTC-TCTCC--TC 478
|| ||| || | ||| | |||| || | ||||||||||| ||||| ||
Sbjct 296 CGATTTCCATTACCTCCACCCTCGACGGCCACTACCACCACCGTCGTCTCCTCTCCCCTC 355
Query 479 AGCTTTCTCGTCAGGTGATAAGGGCGATATCAGGATGTAGAAGAGAAGCGATAGGGATAG 538
| |||| || ||||||||| | |||||||| |||||||| ||||||||| | |||||||
Sbjct 356 AAATTTCCCGGCAGGTGATACGAGCGATATCTGGATGTAGGAGAGAAGCGGTGGGGATAG 415
Query 539 AGGAAGAAAACAGAGCATTAATGGAGAA-CAG-AGTTCAAAGGTTTCCGTTTTGGTCGGA 596
| ||||||||||||||||| |||||||| | | | |||||||||||||||||||||||||
Sbjct 416 AAGAAGAAAACAGAGCATTGATGGAGAATC-GTA-TTCAAAGGTTTCCGTTTTGGTCGGA 473
Query 597 ACAAACGT--CGGCGACGGCGATGGAGTCGTCGACGAAGTTACAAAACGGGTTCAGTGGT 654
||| || | |||||||||||||||| || | ||| |||||||||| ||||| |||
Sbjct 474 GCAA--GTTACTACGACGGCGATGGAGTCTTC--C-AAGATACAAAACGGATTCAGCGGT 528
Query 655 TTTCGCGGCGTGCTTTACGCGACGAGGAACATGAGTTCGCTT-CTCCTTATGGTTTTAAT 713
|| || || ||| | || ||| || |||||| | ||| || || || || | || ||
Sbjct 529 TTCCGAGGAGTGATGAACACGATGAAGAACATAAACTCG-TTACTTCTCGTGATCTTGAT 587
Query 714 G-AACGGTCTCGTCTACTGTTTTCCCGGAGAC 744
| || ||||| || || | | | |||||||||
Sbjct 588 GCAA-GGTCTTGTTTATTATATCCCCGGAGAC 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5