BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22050.1
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472439 jgi|Araly1|472439|fgenesh2_kg.1__2393__AT1G22050.1 863 0.0
> Ahg472439 jgi|Araly1|472439|fgenesh2_kg.1__2393__AT1G22050.1
Length=734
Score = 863 bits (467), Expect = 0.0
Identities = 673/762 (88%), Gaps = 56/762 (7%)
Strand=Plus/Plus
Query 14 TCTCTCTT-TTCTTCTTCCTAAATTTCTTTCCACGAGAATTGATTTGGGTTTGTGTTGtt 72
||| |||| |||||||||||||||||||||||||||| ||||||||||| || | |||
Sbjct 20 TCT-TCTTCTTCTTCTTCCTAAATTTCTTTCCACGAGGATTGATTTGGG-TT-T-TTG-- 73
Query 73 tttttctttcttttttgggtttttGTAATTGGGTTGGTG---AAT-AATCCTGCAAAAGT 128
| | | |||||| | | ||||||||||||| ||| || |||| |||||
Sbjct 74 ----T-TGT-TTTTTT--G-----G-AATTGGGTTGGTGAAAAATCAAGCCTG-TAAAGT 118
Query 129 GTTCGATGATTTTCTCCAGAGAAGAAttttgaagtttctctttttagagattttttttgt 188
|||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 119 GTTCGATGATTTTCCCCAGAGAAGAATTTTGAAGTTTCTC-------------TTTTT-T 164
Query 189 tgttggggttttttgttttCTGGGGGAAATTGAAAAGAGATGGCAGGTGAAGAAGATTGG 248
| || | |||||| |||||| ||||||||| || |||||||||||||||||||||
Sbjct 165 T-TT---G-TTTTTG----CTGGGGAAAATTGAAAGGACATGGCAGGTGAAGAAGATTGG 215
Query 249 ATAGAACTAAAGTTTAGACTAGCAGATGGTACAGACATAGGTCCAAGCAAGTATAATCAA 308
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 216 ATAGAACTCAAGTTTAGACTAGCAGATGGTACAGACATAGGTCCAAGCAAGTACAATCAA 275
Query 309 TCTATGACTGTTTCTTCTCTTAAAGAGAAACTCATTTCTCAATGGCCTAAAGATAAAGAA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TCTATGACTGTTTCTTCTCTTAAAGAGAAACTCATTTCTCAATGGCCTAAAGATAAAGAA 335
Query 369 AATACTCCAAAAACTGTAAATGATATGAAGCTCATCAATGCCGGGAAAATACTGGAGAAC 428
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 336 AATACTCCAAAAACTGTAAATGATATGAAGCTTATCAATGCCGGGAAAATACTGGAGAAC 395
Query 429 AATAGGACACTTGCTGAATCCAGGCTTCCTGTTTGTGAACTTCCTGGAATGATCATTACT 488
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 396 AATAGGACACTTGCTGAATCTAGGCTTCCTGTTTGTGAACTTCCTGGAATGGTCATTACT 455
Query 489 ATGCATATTGTTCTTCGCCTTCCTACGT-TAGACAAAAAGAGCGAAAAACTGCAGAATGA 547
|||||| ||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 456 ATGCATGTTGTTCTTCGCCTTCCTAC-TCTAGACAAAAAGAGCGAAAAACAGCAGAATGA 514
Query 548 TCCACCGATGAAGAATCGCTGCGTGTGCACCATTTTGTAGCTGCAAGTAAATTGGATCAT 607
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 515 TCCACCGATGAAGAATCGATGCGTGTGTACCATTTTGTAGCTGCAAGTAAATTGGATCAC 574
Query 608 AGAGATTTATATCCGTCATGATCATGGCACTAG-AT-GATGCTCCACGGAACAACTTCCA 665
|||||||||||||| ||||||| |||| | | || ||| || || ||||| |||||
Sbjct 575 AGAGATTTATATCCTTCATGATAATGGT--TGGCATAGATACTTCATAGAACAGCTTCCG 632
Query 666 TGGCATCAAACAAGCTTTGAGAAGTTCCTTCAGTACAGAATGATTGGCATAGGCAT-GAA 724
| || |||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 633 TAGCTTCAAACAAGCTTTGAGAAGTTCCTTCAGTACAAAATGATTGGCATAGATATTGAA 692
Query 725 AACAAAAGATCTTCATTACAGAATTTGGTTCCATGTGTGTGG 766
||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 AACAAAAGATCTTCATTACAGAATTTGGTTCCATGTGTGTGG 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33281306541
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5