BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22065.1
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921219 jgi|Araly1|921219|scaffold_102500.1 326 2e-88
> Ahg921219 jgi|Araly1|921219|scaffold_102500.1
Length=262
Score = 326 bits (176), Expect = 2e-88
Identities = 225/248 (91%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 95 CTGTAAACTTTTTGATAACATGTCACTAGACGGATCGGGACTAGGAGGGATGGCTATAGC 154
|||| ||||||| | || ||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 4 CTGTGAACTTTTCG--AATATGTCGCTAGACGGATCAGGACTAGGAGGGATGGCTATGGC 61
Query 155 GGAGGTTTACACGATGAGGAAGTTTCATAGAGAGAACATGAAGAGTATAACGGCAACCGC 214
||||| ||||||| |||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 62 GGAGGCTTACACGGTGAGGAAGTTTCATAGAGAGAACATGAAGAGTATGATGGCTACCGC 121
Query 215 GGCCAC-A--ACCGCTGGTGGAATCGAAGAGAACGGTGGAGGATCTGGTCGATGGTTCTT 271
|||||| | ||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 122 GGCCACAAGTACCGCCGGTGGAATCGAAGAGAACGGTGGAGGATCTGGCCGGTGGTTCTT 181
Query 272 TGGAAAGCTGAGCACCAAGAAAAACTCTGCTAAAGTTTGTGATCTTATGATTACAGAATA 331
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 182 TGGAAAGCTGAGCACCAAGAAAAACTCTGCTAAAGTTTGTGATCTTATGATCACGGAATA 241
Query 332 AGCTATAA 339
| |||||
Sbjct 242 ATATATAA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22530643947
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5