BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22090.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912062 jgi|Araly1|912062|Al_scaffold_0001_2316 1221 0.0
Ahg921221 jgi|Araly1|921221|scaffold_102502.1 1103 0.0
Ahg345820 jgi|Araly1|345820|fgenesh1_pg.C_scaffold_4002162 67.6 2e-10
Ahg934819 jgi|Araly1|934819|scaffold_402807.1 58.4 1e-07
> Ahg912062 jgi|Araly1|912062|Al_scaffold_0001_2316
Length=1014
Score = 1221 bits (661), Expect = 0.0
Identities = 882/984 (90%), Gaps = 34/984 (3%)
Strand=Plus/Plus
Query 46 TCCGCAGAGGAATGAATCTGACGGTTTTGATTATCCCGACGGTATCCCAATATCATACAA 105
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 39 TCCGCAGAGGAATGAATCTGATGGTTTCGATTATCCCGACGGTATTCCAATATCATACAA 98
Query 106 TCTTCATAGGCTTCGTCACTTTGAGTGTGAAGGC-AGTTATCCCAAGTATCCTTATGGTT 164
||| |||||||||| |||||| || ||||||||| || ||| | ||||||||||||||||
Sbjct 99 TCTCCATAGGCTTCTTCACTTCGACTGTGAAGGCAAG-TATGCAAAGTATCCTTATGGTT 157
Query 165 CTTTGGTCAAGTTTTATGCAATGGTGGGACTTCATCGTTACAATGTGTTGGAGGGGAAAA 224
| |||||||| |||||||| |||||||| ||||| ||||||||| |||||||||||||||
Sbjct 158 CCTTGGTCAAATTTTATGCTATGGTGGGGCTTCACCGTTACAATTTGTTGGAGGGGAAAA 217
Query 225 ATTTGCAGCTCGATACCCTAAAGAGTTTCAACATGAGAATCAATTGTGGTGCTTCTTCTT 284
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 218 ATTTGCAGCTCGATACCCTAAAGAGTTTCAACATGAGAATTAATTGCGGTGCTTCCTCTT 277
Query 285 ACTACATTACTTTGGCTGCACGCGTTCCAGATAGCGGTTTGAAGCAGATCTTTCAGGTTC 344
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 278 ACTACATTACTTTGGCTGCACGCGTTCCAGATAGCGGTTTGCAGCAAACCTTTCAGGTTC 337
Query 345 TAGTTCATGAAGAGCGTCTTGGCAGTTTAGACATGACATGTACTATCGCTAGACCTCGAG 404
||||||||||| | |||||||||||||||||| ||| || || || |||||||||||||
Sbjct 338 TAGTTCATGAACACCGTCTTGGCAGTTTAGACGTGAGGTGCACCATTGCTAGACCTCGAG 397
Query 405 TGACTACCAATGTGCCTTTTCTACGTCCGCACAGCGAATCAGAGTATGATTATATGGACA 464
|||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 398 TGACCACCAATGTGCCTTTCCTACGTCCCCATAGCGAATCAGAGTATGATTATATGGACA 457
Query 465 ATGATGAATTGCCTGACTGGCCTTCAGAGATTGCTTTCGATGATACAAAACGGTTTCATC 524
|||||||||||||||| ||||||| ||||||||| ||| |||||| |||||||||||| |
Sbjct 458 ATGATGAATTGCCTGATTGGCCTTTAGAGATTGCCTTCAATGATAGAAAACGGTTTCAGC 517
Query 525 TGGTGAAGGAATCAGAGTTGCGAGACAATGATTGGATTCGACTCTATTTGGAACTTACAC 584
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 518 TGGTGAAGGAATCAGAGTTACGAGACAATGATTGGATTCGTCTATATTTGGAACTTACAC 577
Query 585 TTGTTGCTCACGATAGGTTTCTTACA---GT--T-CACTATCTCTCCCAGTTGGAGATTG 638
|||||||||||||||||| ||||||| || | |||||||| ||||||||||||||||
Sbjct 578 TTGTTGCTCACGATAGGTCTCTTACAGTTGTAATGCACTATCTGTCCCAGTTGGAGATTG 637
Query 639 TGAAAGTTGCGATTGAAGAAGTGGAGCAACCGAATGCGAGTCTCAACACCAAAACTACAT 698
|| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 638 TGCAAGTGGCGATTGAAGATGTGGAGCCGCCGAATGCGAGTCTCAACACCAAAACTACAT 697
Query 699 TTGTCTACATAACTTATAAGGACTTGGCAAAGGCTCAGATTGGTGAGCCGGTTGATCGCA 758
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 698 TTGTCTACATAACTTATAAGGACTTGGAAAAGGCTCGGATTGGTGAGCCGGTTGATCGCA 757
Query 759 AAGCTATTGTTAGAAAAATCATCAATGA-GACTACGGGACTCTTGAGACTCCGGGGTGAT 817
||||||||||||||| ||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 758 AAGCTATTGTTAGAAGAATTATCAAT-ATGACTACGGGACTCTTGAGACTCCGGGGTGAT 816
Query 818 TATTGGAGTGGAGAAAGAAG-TGTGA-TCACTCCGGAGGAGGAATATATGC-TT--CTCC 872
|||||||||||||||| ||| | ||| | ||| | ||||||||| ||||| || ||||
Sbjct 817 TATTGGAGTGGAGAAA-AAGCTATGAAT-ACT--G-AGGAGGAATCTATGCATTATCTCC 871
Query 873 ATGGCGGAGAAAAAGTTC-GAAACAATGAGCAGCGTTCTAAAAAACTTAAGCGTCGTGTA 931
||| |||| ||||| || || ||||||||||||||||| || |||||||||||| ||
Sbjct 872 CTGGTGGAGGAAAAGCTCTGAGT-AATGAGCAGCGTTCTAAGAAGCTTAAGCGTCGTTTA 930
Query 932 GGTGTTCATAGGCTATGGCGAT------------GGTGGTACCAGGCTTACAAAAACCGT 979
||||||||||| |||||||||| ||||||||||||| |||||||| ||
Sbjct 931 GGTGTTCATAGACTATGGCGATTATCTAATCCTAGGTGGTACCAGGCATACAAAAAACGG 990
Query 980 GGCCTCCGCTCGTCGTCTTATTAA 1003
||||||||||||||||||||||||
Sbjct 991 GGCCTCCGCTCGTCGTCTTATTAA 1014
> Ahg921221 jgi|Araly1|921221|scaffold_102502.1
Length=1022
Score = 1103 bits (597), Expect = 0.0
Identities = 762/842 (90%), Gaps = 10/842 (1%)
Strand=Plus/Plus
Query 117 TTCGTCACTTTGAGTGTGAAGG-CAGTTATCCCAAGTATCCTTATGGTTCTTTGGTCAAG 175
|||||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 103 TTCGTCACTTCGAGTGTGAAGGTAAG-TATCCTAAGTATCCTTATGGTTCCTTGGTCAAG 161
Query 176 TTTTATGCAATGGTGGGACTTCATCGTTACAATGTGTTGGAGGGGAAAAATTTGCAGCTC 235
||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 162 TTTTATGCAATGGTGGGGCTTCATCGTTACAATTTGTTGGAGGGGAAAAACTTGCAGCTC 221
Query 236 GATACCCTAAAGAGTTTCAACATGAGAATCAATTGTGGTGCTTCTTCTTACTACATTACT 295
||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||| |||
Sbjct 222 GATACCCTAAAGAGTTTCAACATGAGAATTAATTGCGGTGCTGCCTCTTACTACATAACT 281
Query 296 TTGGCTGCACGCGTTCCAGATAGCGGTTTGAAGCAGATCTTTCAGGTTCTAGTTCATGAA 355
|||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 282 TTGGATGCACGCGTTCCAGATAGCGGTTTGCAGCAAATCTTTCAGGTTCTAGTTCACGAA 341
Query 356 GAGCGTCTTGGCAGTTTAGACATGACATGTACTATCGCTAGACCTCGAGTGACTACCAAT 415
||||||||||||||||||||| |||| || || | || |||||||||||||| ||||
Sbjct 342 GAGCGTCTTGGCAGTTTAGACGTGACGTGCACCGTTGCGAGACCTCGAGTGACCACCAGC 401
Query 416 GTGCCTTTTCTACGTCCGCACAGCGAATCAGAGTATGATTATATGGACAATGATGAATTG 475
| |||||| ||| ||| ||| ||||||| || |||||||||||||||||||||||||||
Sbjct 402 GAGCCTTTCCTAGGTCGGCATAGCGAATTAGCCTATGATTATATGGACAATGATGAATTG 461
Query 476 CCTGACTGGCCTTCAGAGATTGCTTTCGATGATACAAAACGGTTTCATCTGGTGAAGGAA 535
||| | ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 462 CCTAATTGGCCTTCAGAGATTGCTTTCAATGATAGAAAACGGTTTCACCTGGTGAAGGAA 521
Query 536 TCAGAGTTGCGAGACAATGATTGGATTCGACTCTATTTGGAACTTACACTTGTTGCTCAC 595
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 522 TCAGAGTTACGAGACAATGATTGGATTCGTCTATATTTGGAACTTACACTTGTTGCTCAC 581
Query 596 GATAGGTTTCTTACAGTTCACTATCTCTCCCAGTTGGAGATTGTGAAAGTTGCGATTGAA 655
||||||| |||||||||||||||||| ||| |||||||||||||| |||| | |||||||
Sbjct 582 GATAGGTCTCTTACAGTTCACTATCTGTCCAAGTTGGAGATTGTGCAAGTGGTGATTGAA 641
Query 656 GAAGTGGAGCAACCGAATGCGAGTCTCAACACCAAAACTACATTTGTCTACATAACTTAT 715
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GATGTGGAGCCGCCGAATGCGAGTCTCAACACCAAAACTACATTTGTCTACATAACTTAT 701
Query 716 AAGGACTTGGCAAAGGCTCAGATTGGTGAGCCGGTTGATCGCAAAGCTATTGTTAGAAAA 775
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 702 AAGGACTTGGCAAAGGCTCGGATTGGTGAGCCGGTTGATCGCAAAGCTATTGTTAGAAGA 761
Query 776 ATCATCAATGA-GACTACGGGACTCTTGAGACTCCGGGGTGATTATTGGAGTGGAGAAAG 834
||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 762 ATCATCAAT-ATGAGTACGGGAATCTTGAGACTCCGGGGTGATTATTGGAGTGGAGAAA- 819
Query 835 AAG-TGTGA-TCACTCCGGAGGAGGAATATATGCTTCTCCATGGCGGAGAAAAAGTTC-G 891
||| | ||| | ||| ||||||||||| ||||| ||||| ||| |||| ||||| || |
Sbjct 820 AAGCTATGAAT-ACTGAGGAGGAGGAATCTATGCATCTCCCTGGTGGAGGAAAAGCTCTG 878
Query 892 AAACAATGAGCAGCGTTCTAAAAAACTTAAGCGTCGTGTAGGTGTTCATAGGCTATGGCG 951
|| ||||||||||||||||||| |||||||||||| ||||||||||||| || |||||
Sbjct 879 AAT-AATGAGCAGCGTTCTAAAATGCTTAAGCGTCGTTTAGGTGTTCATAGACTTTGGCG 937
Query 952 AT 953
||
Sbjct 938 AT 939
> Ahg345820 jgi|Araly1|345820|fgenesh1_pg.C_scaffold_4002162
Length=918
Score = 67.6 bits (36), Expect = 2e-10
Identities = 45/49 (92%), Gaps = 2/49 (4%)
Strand=Plus/Plus
Query 526 GGTGAAGGAATCAGAGTTGCGAGACAATGATTGGATTCGACTCTATTTG 574
|||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 624 GGTGAAGGAATCAGAGTTGCGAGACAATGAATGGATTT--CTCTATTTG 670
> Ahg934819 jgi|Araly1|934819|scaffold_402807.1
Length=911
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 526 GGTGAAGGAATCAGAGTTGCGAGACAATGATTGG 559
|||||||||||||||||||||||||||||| |||
Sbjct 600 GGTGAAGGAATCAGAGTTGCGAGACAATGAATGG 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5