BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22100.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313098 jgi|Araly1|313098|fgenesh1_pm.C_scaffold_1001878 2139 0.0
Ahg475379 jgi|Araly1|475379|fgenesh2_kg.2__509__AT1G58936.1 1395 0.0
> Ahg313098 jgi|Araly1|313098|fgenesh1_pm.C_scaffold_1001878
Length=1326
Score = 2139 bits (1158), Expect = 0.0
Identities = 1271/1327 (96%), Gaps = 2/1327 (0%)
Strand=Plus/Plus
Query 92 ATGGAGGAGATTGTTTTGGAACCAAAAGATGCAGTTGATTGGTCATATAGAGGCGAAGGA 151
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGATTGTTTTGGAACCAAAGGATGCAGTTGATTGGTCATATAGAGGCGAAGGA 60
Query 152 GCTGTTAATTTGGTTCTTGCTTACACTGGATCTTCTCCCTCTTTCTTGGGAAAGATGATG 211
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 GCTGTTAATTTGGTTCTCGCTTACACTGGATCTTCTCCCACTTTCTTGGGAAAGATGATG 120
Query 212 AGGATACAAAAAATGCCAAAGGATGGGAATGAAAATGGAGACAAAAGTGAAAATGGTCTT 271
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AGGATACAGAAAATGCCAAAGGATGGGAATGAAAATGGAGACAAAAGTGAAAACGGTCTT 180
Query 272 ACTACTCATGAAAAGCTTATTTGGGGAGACGTTAAGGATCTTGTATCTTGCAAGAACAAG 331
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 181 ACTACTCATGAAAAGCTTATTTGGGCAGACATTAAGGATCTTGTATCTTGCAAGAACAAG 240
Query 332 GAGATTGAAGAGTATTTGTTTGTCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACAT 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGATTGAAGAGTATTTGTTTGTCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACAT 300
Query 392 GTCAATCCTGGAATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATT 451
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTCAATCCTGGAATACGTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATT 360
Query 452 ATAACATCTCAACGTCCTTCTTGGCGAGCTGATGTAGCTAGTGTGGATACTAACCGCAGT 511
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 ATAACATCTCAGCGTCCTTCTTGGCGAGCTGATGCAGCTAGTGTGGATACTAACCGCAGT 420
Query 512 TCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGGTCATGTTGAGGATAAACCA 571
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCCGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGGTCATGTTGAGGATAAACCA 480
Query 572 TGCTTAAGTGTTGAAATAAAGCCCAAATGTGGATTCCTTCCATCTTCAAGTTTCATAGCA 631
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 TGCTTAAGTGTTGAAATAAAGCCCAAATGTGGATTTCTTCCATCTTCAAGTTTCATAGCA 540
Query 632 GAAGAAAACGTTATTAAGAAGAGTATAACTCGTTTCGAAATGCACCAAGTTCTCAAGCTT 691
|||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 541 GAAGAAAATGTTATTAAGAAGAGTATTACTCGTTTCCAAATGCACCAAATTCTCAAGCTT 600
Query 692 AGGGAAAACGAGATCTCAGAAATCAGTGAATATGATCCTTTAGACCTTTTCTCTGGATCC 751
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGGAAAACGAGATCTCAGAAATCAGTGAATATGATCCTTTAGACCTTTTCTCTGGATCC 660
Query 752 AAAGAAAGAATACTCGAAGCTATAAAAGCGCTCTACACGACTCCTCAGAACAATTTTCGT 811
||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 661 AAAGATAGAATACTCAAAGCAATAAAAGCGCTCTACGCGACTCCTCAGAACAATTTCCGT 720
Query 812 GTGTTTTTGAATGGTTCTCTAGTATTTGGAGGCTTAGGTGGTGGCATATGCAAAACAACC 871
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTGTTCCTGAATGGTTCTCTGGTATTTGGAGGCTTAGGTGGTGGCATATGCAAAACAACC 780
Query 872 TCAAAGGTTGAACTAGCTTTTGAGCATATACTCAAAGATATCATCAAGACCGATGATGGT 931
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 TCAAAGGTTGAACTAGCTTTTGAGCATATACTCAAAGATATCATCAAGACCTATGATGGT 840
Query 932 TTACGTGCAGATCGTTTCATAGAGCTTGTAGCAGAAACTGTTTACACATCCGGAGTTCTA 991
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 TTACGTGCAGATCGTTTCATAGAGCTTGTAGCAGAAACTGTTTACACATCTGGAGTTCTA 900
Query 992 GATCAGCTTCTAGACGTACAAAAGCTCGATAGATATAACATCGAGGGAGCGATTCACGTG 1051
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 GATCAGCTTCTAGACGTCCAAAAGCTCGATAAATATAACATCGAGGGAGCGATTCACGTA 960
Query 1052 TACTATGACTTCATTGACCAGCCATGTAAAGTGTGCAGAGAGTTGAATCAATTTAGCTCT 1111
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 TACTATGACTTCATTGACCAGCCATGTAAAGTGTGCAGAGAGTTGAATCAATATAGCTCC 1020
Query 1112 ATGCACTCAATTCCAATGGACGAAAAAGTGAATATTTTGAAGGAATTTCTAATATCTGCC 1171
||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 ATGCATTCAATTCCACTGGATGAAAAAGTGAATATTTTGAAGGATTTTCTAATATCTGCC 1080
Query 1172 ACTGCAAAGGATTGTAGTGTAATGATAAGTTTTAGATCTACGGAAGCTGGGCTCTCAAAA 1231
|||||||||||||||||||||||||||||||||||| | || |||| ||||||||||| |
Sbjct 1081 ACTGCAAAGGATTGTAGTGTAATGATAAGTTTTAGACCAACAGAAGTTGGGCTCTCAAGA 1140
Query 1232 TCCTCTTCCCATAGTAATCTTCACCTTGAAACAACAAAGCAAGAGTTTGAATACAAGGTA 1291
|||||||| || ||||||||||| |||||| ||||||||||||| ||||| |||||||||
Sbjct 1141 TCCTCTTCTCACAGTAATCTTCATCTTGAATCAACAAAGCAAGAATTTGAGTACAAGGTA 1200
Query 1292 CATTTCATTGATCTTGATATGAGACCTTTGAAGAAAATGGAAGTCTATTACGAGTTAGAC 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1201 CATTTCATTGATCTTGATATGAGACCTTTGAAGAAAATGGAAGTCTATTACGAATTAGAC 1260
Query 1352 AAGAAGATCATGAACACATACTTGGAGATGTTAAAGAAGAAAGGA-ACTCAACCTCAATG 1410
||||||||||||||||||||| |||||||| | |||||||||||| | |||||||| |||
Sbjct 1261 AAGAAGATCATGAACACATACCTGGAGATGCTGAAGAAGAAAGGAGA-TCAACCTCGATG 1319
Query 1411 CTTGTAG 1417
|| |||
Sbjct 1320 TTTCTAG 1326
> Ahg475379 jgi|Araly1|475379|fgenesh2_kg.2__509__AT1G58936.1
Length=1461
Score = 1395 bits (755), Expect = 0.0
Identities = 1174/1370 (86%), Gaps = 54/1370 (4%)
Strand=Plus/Plus
Query 90 AGATGGAGGAGATTGTTTTGGAACCAAAAGATGCAGTTGATTGGTCATATAGAGGCGAAG 149
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 104 AGATGGAGGAGATTGTTTTGGAAACAAAAGATGCAGTTGATTGGTCATATAGAGGCGAAG 163
Query 150 GAGCTGTTAATTTGGTTCTTGCTTACACTGGATCTTCTCCCTCTTTCTTGGGAAAGATGA 209
||| ||||||||||||||| ||||||||||||| |||||| ||||| |||||||| |||
Sbjct 164 GAGTTGTTAATTTGGTTCTCACTTACACTGGATCCTCTCCCACTTTCATGGGAAAGGTGA 223
Query 210 TGAGGATACAAAAAATGCCAAAGGA-TGGGAATGAAAATGGAGACAAAAGTGAAAATGGT 268
|||||| | ||||||||| ||| | |||||||||||||||||||| ||||| |||||||
Sbjct 224 TGAGGACAAAAAAAATGCGAAAC-ACTGGGAATGAAAATGGAGACAGAAGTGGAAATGGT 282
Query 269 CTTACTACTCATGAAAAGCTTATTTGGGGAGACGTTAAGGATCTTGTATCTTGC-AAGAA 327
||||| || || |||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 283 CTTACGACGCAGGAAAAGCTTATTTGGGGAGATATTAAGGATCTTGTATCTTGCCAA-AA 341
Query 328 CAAGGAGATTGAAGAGTATTTGTTTGTCAAACATGTCATGAGACCTTTGTTGGGTCGTAA 387
||||||||||| || ||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 342 CAAGGAGATTGCGGAATATTTGTTTGTCAAACATGTCATGAAACCATTGTTGGGTCACAA 401
Query 388 ACATGTCAATCCTGGAATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAA 447
| |||| ||| ||||||| | |||| ||||| |||||| |||||||| |||||| |||
Sbjct 402 ATATGTTAATGCTGGAATTCCCCTTCCTGTAGAAAAGGAGTTTCTTGAGTCTGTTAAGAC 461
Query 448 AATTA-TAACATCTCAACGTCCTTCTTGGCGAGCTGATGTAGCTAGTGTGGATACTAACC 506
||| | | |||||||| |||| ||||||||||||| ||| ||| ||||||||||||||||
Sbjct 462 AAT-AGTGACATCTCAGCGTCATTCTTGGCGAGCTAATGCAGCCAGTGTGGATACTAACC 520
Query 507 GCAGTTCTGTGCTTCTCATGGATGATTTGACGC-TTTTCGCCCACGGTCATGTTGAGGAT 565
|||||| || |||||||||||||||||| || | ||||| |||| ||||| |||| |||
Sbjct 521 GCAGTTTTGCGCTTCTCATGGATGATTTCAC-CATTTTCTCCCATGGTCAAATTGAAGAT 579
Query 566 -A-AA-CCATGCTTAAGTGTTGAAATAAAGCCCAAATGTGGATTCCTTCCATCTTCAAGT 622
| || |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 580 CATAAACCATGCTTAACTGTTGAAATAAAGCCCAAATGTGGATTTCTTTCATCTTCAAGT 639
Query 623 TTCATAGCAGAAGAAAACGTTATTAAGAAGAGTATAACTCGTTTCGAAATGCACCAAGTT 682
|||||||| | |||||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 640 TTCATAGCGGGAGAAAATGTTATTAAGAAGAGTATAAGTCGTTTCGAAATGTACCAAGTT 699
Query 683 CTCAAGCTTAGGGAAAACGAGATCTCAGAAATCAGTGAATATGATCCTTTAGACCTTTTC 742
|| |||||||| |||||| |||| ||| |||||||||||||| |||| ||||||||||||
Sbjct 700 CTAAAGCTTAGAGAAAACAAGATATCACAAATCAGTGAATATAATCCCTTAGACCTTTTC 759
Query 743 TCTGGATCCAAAGAAAGAATACTCGAAGCTATAAAAGCGCTCTACACGACTCCTCAGAAC 802
|||||||||||||| ||||||| | |||| ||||||||||||||| |||||||||| |||
Sbjct 760 TCTGGATCCAAAGATAGAATACACAAAGCGATAAAAGCGCTCTACTCGACTCCTCAAAAC 819
Query 803 AATTTTCGTGTGTTTTTGAATGGTTCTCTAGTATTTGGAGGCTTAGGTGGTGGCATATGC 862
| ||| | ||||| |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 820 AGTTTACAAGTGTTCTTGAATGGTTCTCTGGTATTTGGAGGTTTCCGTGGTGGCATATGC 879
Query 863 AAAACAACCTCAAAGGTTGAACTAGCTTTTGAGCATATACTCAAAGATAT-CATCAAGAC 921
||||||||| ||||| ||||| ||||||||||||||| ||||||||| || | |||| ||
Sbjct 880 AAAACAACCCCAAAGCTTGAATTAGCTTTTGAGCATAAACTCAAAGA-ATTCTTCAAAAC 938
Query 922 CGATGATG---GTT---TACGTGCAGAT-CGTTTCATAGAGCTTGT-AGCAGAAACTGTT 973
||| |||| | |||||||| || | ||||||||||||||| | |||||||||||
Sbjct 939 CGAAGATGACAGCGGCGTACGTGCAAATAC-TTTCATAGAGCTTGTTA-CAGAAACTGTT 996
Query 974 TACACATCCGGAGTTCTAGATCAGCTTCTAGACGTACAAAAGCTCGATAGATATAACATC 1033
||| |||| |||| ||||||||||||||| ||||| ||||||||||| | ||||||||||
Sbjct 997 TACGCATCTGGAGCTCTAGATCAGCTTCTTGACGTTCAAAAGCTCGACAAATATAACATC 1056
Query 1034 GAGGGAGCGATTCACGTGTACTATGACTTCA-TTGACCAGCCATGTAAAGTGTGC-A-GA 1090
|||||||||||||||| ||||||||||| | ||||| |||||||||||| |||| | ||
Sbjct 1057 GAGGGAGCGATTCACGCCTACTATGACTT-AGTTGACAAGCCATGTAAAGCGTGCCAAGA 1115
Query 1091 G----A--GTTG-AA-T---C-AAT---TTAGCT-CTATGCACTCAATTCCA-ATGGACG 1133
| | || | || | | ||| || | | | ||||| || |||||| | ||| |
Sbjct 1116 GTTGGAAAGTAGTAAATTATCGAATCAGTTTGGTTCCATGCATTCGATTCCACA-GGATG 1174
Query 1134 AAAAAGTGAATATTTTGAAGGAATTTCTAATATCTGCCACTGCAA-AGGATTGTAGTGTA 1192
| ||||| |||||||||||||| |||||||||||| ||||||| | || |||||||||||
Sbjct 1175 AGAAAGTAAATATTTTGAAGGATTTTCTAATATCTTCCACTGCTACAG-ATTGTAGTGTA 1233
Query 1193 ATGATAAGTTTTAGATCTACGGA-AGCTGGGCTCTCAAAATCCTCTTCCCATAGTAATCT 1251
||||||||||| ||| | | || | | ||||||||||||||||||||||| ||||| |
Sbjct 1234 ATGATAAGTTTCAGACCAATAGAGA-CAGGGCTCTCAAAATCCTCTTCCCACGGTAATAT 1292
Query 1252 TCACCTTGAAACAACAAAGCAAGAGTTTGAATACAAGGTACATTTCATTGATCTTGATAT 1311
||| |||||| ||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct 1293 TCATCTTGAATCAACAAAGCAAGAATTTGAGTATAAGGTACACTTCATTGATCTTGATAT 1352
Query 1312 GAGACCTTTGAAGAAAATGGAAGTCTATTACGAGTTAGACAAGAAGATCATGAACACATA 1371
|||||||||||||| |||||||| |||| |||| | |||||||||||||| ||| |||||
Sbjct 1353 GAGACCTTTGAAGAGAATGGAAGCCTATCACGAATCAGACAAGAAGATCACGAAAACATA 1412
Query 1372 CTTGGAGATGTT-AA-A-GAAGAAAGGA-ACTCAACCTCAATGCTTGTAG 1417
| |||||||| | || | |||||||||| | |||||||| | |||| |||
Sbjct 1413 CCTGGAGATGCTCAAGAAGAAGAAAGGAGA-TCAACCTCGACGCTTTTAG 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5