BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22110.1 Length=2056 Score E Sequences producing significant alignments: (Bits) Value Ahg472444 jgi|Araly1|472444|fgenesh2_kg.1__2398__AT1G22110.1 1495 0.0 > Ahg472444 jgi|Araly1|472444|fgenesh2_kg.1__2398__AT1G22110.1 Length=1799 Score = 1495 bits (809), Expect = 0.0 Identities = 979/1056 (93%), Gaps = 32/1056 (3%) Strand=Plus/Plus Query 1 ATaaaataaaagaaacaaaacccattaaa-aaaaa-aaTTGATAtttttttgttgggttt 58 |||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| Sbjct 1 ATAAAATAAAAGAAACAAAACCCAGGAAATAAAAAGAATTGATATTTTTTTGTTGGGTTT 60 Query 59 tgttatttttattttCTTGTAAAATCCAGATATGGAGAGAGCCTCTTCTTCCTCTGACTC 118 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 TGTTATTTTTATTTTCTTATAAAATCCAGATATGGAGAGAGCCTTTTCTTCCTCTGACTC 120 Query 119 ATCATCATCCATGGCTTCTTCTTCTGATCAGTCTCTTTCCATCAACTCCGATCAAACCTC 178 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATCATCATCCATGCCTTCTTCTTCTGATCAGTCTCTTTCCATCAACTCCGATCAAACCTC 180 Query 179 ACCTTTTGTGACGTCATCCATGCTTTCACGCACGTCATCTTCTTCTTCCTCCGCCGTGGG 238 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ACCTTTCGTGACGTCATCCATGCTTTCACGCACGTCATCTTCTTCTTCCTCCGCCGTGGG 240 Query 239 AGACTACATCGGGACAGAGAGCTGCTTCGACATCCTCTCCGCTGACGAAGGGAACGATGT 298 |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| Sbjct 241 TGACTACATCGGGACAGAGAGCTGCTTTGACGTCCTCTCCGCTGACGAAGAAAACGATGT 300 Query 299 TGTCTCCGTTGCGTCGGAGCCTGTAAAAAGCCGGTTTCGTTACGGTGGAAGgaggagaga 358 ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGTCTCCGTTACGTCCGAGTCTGTAAAAAGCCGGTTTCGTTACGGTGGAAGGAGGAGAGA 360 Query 359 ggagagagaAGCTAGAGCTGCGGCGGCGCGTGAGTTTCCTCCTCCGATACCGTTGCTTGC 418 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 361 AGAGAGAGAAGCTAGAGCTGCGGCGGCGCGTGAGTTTCCTCCGCCGATACCGTTGCTTGC 420 Query 419 TCAGACGGGGAATCTTCTCCCGCACATGCCGTGGGTTCTCAAGCGTGTGGTGACCAGCGA 478 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 421 TCAGACGGGGAATCTCCTCCCGCACATGCCGTGGGTTCTCAAGCGTGTGGTGACGAGCGA 480 Query 479 CGGCAGGCTTATACTCAGAGAAGAGAAGGTTCGTCATCATGAGTATTTCCGTGCGAATAG 538 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CGGGAGGCTTATACTCAGAGAAGAGAAGGTTCGTCATCATGAGTATTTCCGTGCGAATAG 540 Query 539 ATCCAATGGTCGTCTCACTCTCCACCTTGTTCCTTTAGACGATGATGTTTTTGATCTTCC 598 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| Sbjct 541 ATCCAATGGTCGTCTCACTCTTCACCTTGTTCCTTTAGACGATGACGTTTTTGAACTTCC 600 Query 599 TCAAGAACCCTCTCATTACCAAAGtgatgatga-a--gaggatga------tg---atga 646 ||||||||||||||||||||||||||||||||| | || ||||| || |||| Sbjct 601 TCAAGAACCCTCTCATTACCAAAGTGATGATGATAACGATGATGAAGAGGATGGTGATGA 660 Query 647 --a-tgtgatgatgaggatgagtgcgatgatgatgatcagcaagaggtggaagatgattt 703 | ||||||||| ||||||| || ||||||||| | || |||||||||||||||||||| Sbjct 661 TCAGTGTGATGATCAGGATGAATGTGATGATGATCAGCATCAAGAGGTGGAAGATGATTT 720 Query 704 ggatgatCTGGCGGATAAGATTAATAAGGATGTTACTA----T---T--AATGATGATGA 754 |||||||||||||||||||||||||||||||||| ||| | | ||||||||||| Sbjct 721 GGATGATCTGGCGGATAAGATTAATAAGGATGTTGCTAGCAATGCCTCTAATGATGATGA 780 Query 755 TAAGGGCAATGTGCATGGTGATAGTGATGATGGATATAGGAAGGTTATATTAGCGGCGGT 814 ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| Sbjct 781 TAAGGGCAATGTGCATGGTGATAGTGAAGATGGATATAGAAAGGTTATCTTAGCGGCGGT 840 Query 815 GGGGGAGGAGACGGTGGTGGAGAGTGGAATGATGGTCGGAGGAGGAGGATCGCCGAGAGG 874 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| Sbjct 841 GGGGGAGGAGACGGTGGGGGAGAGTGGAGTGATGGTCGGAGGAGGAGGATCGCCAAGAGG 900 Query 875 AAAGTGTTTGAAGTCATGTTTTGTTGGTATGAGAGTTCATGAGATAAGACCAGTTCTTAG 934 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 901 AAAGTGTTTGAAGTCTTGTTTTGTTGGTATGAGAGTTCGTGAGATAAGACCAGTTCTTAG 960 Query 935 TTGATAATTCTTATTATTA-TTAAGTAGTTCTTGTTGATTAGCATCTTTTT----GGGTG 989 ||||| || ||||||||| ||| |||||||||||| |||||||||||||| ||||| Sbjct 961 TTGATTCTTATTATTATTAATTA-GTAGTTCTTGTTAATTAGCATCTTTTTTTTTGGGTG 1019 Query 990 GAAAACAAGATTATTATCTAAGAGAGTAATAAAATT 1025 |||||||||||||||||| ||||||| ||||||||| Sbjct 1020 GAAAACAAGATTATTATCGAAGAGAGCAATAAAATT 1055 Score = 590 bits (319), Expect = 2e-167 Identities = 494/572 (86%), Gaps = 38/572 (7%) Strand=Plus/Plus Query 1289 ATAAAATCGAATCGTAATTTCCTTTAAAGGAAAATAGTAGTAATTGAATAAAAAGATTTT 1348 |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| || Sbjct 1195 ATAAAATCGAATCGTAATCTCCTTTAAAGGAAAATAATAGTAATTGAAT-AAAAGAATTC 1253 Query 1349 CAGAGAGCGAAGAAATGC---AAAGaaaaaaaaa-GGGAAGAAACATAACAGCGAATATT 1404 || ||| ||||||||||| ||| ||||||||| |||||||||||||||||| |||||| Sbjct 1254 CAAAGACCGAAGAAATGCAAAAAAAAAAAAAAAAGGGGAAGAAACATAACAGCTAATATT 1313 Query 1405 CGATAAACCATATGGTGC-AAGTGCAAACAGCTAATATTGTTATTCGTTTTTGGGGAGAA 1463 |||||| ||||||||||| ||||| ||||||||||||||||| ||| |||||| ||||| Sbjct 1314 CGATAATCCATATGGTGCAAAGTGAAAACAGCTAATATTGTTGTTCATTTTTGTAGAGAA 1373 Query 1464 TTTAAGTTTATAGGAAATTGATTTTGAATTGACTTCTACCTTAAAATCCAGCTATGTTCT 1523 ||||| ||| |||||||| ||| |||||||||||| |||||| || || || Sbjct 1374 TTTAAATTTCTAGGAAATCGATATTGAATTGACTTATACCTT--AA---AG-TA------ 1421 Query 1524 CGTATCTATCACTTCAAAAATCGTATCTACTTA-AATACATATATATCCTGTAAGATAAA 1582 | | |||||||||||||||||||| | | | || | ||||||||||||||||||||| Sbjct 1422 --T-T-TATCACTTCAAAAATCGTATGT-CGAACAAAAAATATATATCCTGTAAGATAAA 1476 Query 1583 CGAGATCATTTTGAGTAAGAAATCAG-AA-GTAAACAAATATATAATCTTTTATA-C-aa 1638 |||| |||||||| ||| |||||||| || | || |||| || | || | | | || Sbjct 1477 CGAGGTCATTTTGTGTACGAAATCAGAAACG-AACCAAA-ATCTCAT-ACCAACACCAAA 1533 Query 1639 aaaaaaaaaactgaaaaagaaaagaagccaataagggagaataaaaggtacggagaaaaa 1698 |||||||||| ||| ||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1534 AAAAAAAAAATTGAGAAA-AAGAGAAGCCAATAAGGGAGAATAAAAGGTACGGAGAAAAA 1592 Query 1699 TGTTAAGTACAGCTAAGATAAGAAAGATAGAGAGAGTTTCCCGATGAATATTAAGACAGA 1758 ||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| Sbjct 1593 TGT-AAGTACAGCTAAGATA-GAAAGATAGAGAG--TTTCCCGATGAATTTTAAGACAGA 1648 Query 1759 GACACTTA-CTTAACTCTGTCTTCTGCAATTTGTCAGTTCCTCATCATTGGTCCTTTCCC 1817 |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1649 GACACTTAACTTAACTCTGTCTTCTGTAATTTGTCAGTTCCTCATCATTGGTC-TTTCCC 1707 Query 1818 ACCACCTGATCTCTTGTCCTATATTCCCCTCC 1849 |||||||||||||||||||||||||||||||| Sbjct 1708 ACCACCTGATCTCTTGTCCTATATTCCCCTCC 1739 Score = 124 bits (67), Expect = 2e-27 Identities = 75/79 (95%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 1059 tttttttCATGAGGAAATGTTGTTTATTTTTGTAATCTTCAGAGGCTATGGTGTAATTTA 1118 ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1054 TTTTTTTCATGAGAAAAAGTTGTTTGTTTTTGTAATCTTCAGAGGCTATGGTGTAATTTA 1113 Query 1119 TCTTCTTTTAGATGTTTTT 1137 |||||||||||||||||| Sbjct 1114 GCTTCTTTTAGATGTTTTT 1132 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77323197350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5