BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22110.1
Length=2056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472444 jgi|Araly1|472444|fgenesh2_kg.1__2398__AT1G22110.1 1495 0.0
> Ahg472444 jgi|Araly1|472444|fgenesh2_kg.1__2398__AT1G22110.1
Length=1799
Score = 1495 bits (809), Expect = 0.0
Identities = 979/1056 (93%), Gaps = 32/1056 (3%)
Strand=Plus/Plus
Query 1 ATaaaataaaagaaacaaaacccattaaa-aaaaa-aaTTGATAtttttttgttgggttt 58
|||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 1 ATAAAATAAAAGAAACAAAACCCAGGAAATAAAAAGAATTGATATTTTTTTGTTGGGTTT 60
Query 59 tgttatttttattttCTTGTAAAATCCAGATATGGAGAGAGCCTCTTCTTCCTCTGACTC 118
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TGTTATTTTTATTTTCTTATAAAATCCAGATATGGAGAGAGCCTTTTCTTCCTCTGACTC 120
Query 119 ATCATCATCCATGGCTTCTTCTTCTGATCAGTCTCTTTCCATCAACTCCGATCAAACCTC 178
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCATCATCCATGCCTTCTTCTTCTGATCAGTCTCTTTCCATCAACTCCGATCAAACCTC 180
Query 179 ACCTTTTGTGACGTCATCCATGCTTTCACGCACGTCATCTTCTTCTTCCTCCGCCGTGGG 238
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCTTTCGTGACGTCATCCATGCTTTCACGCACGTCATCTTCTTCTTCCTCCGCCGTGGG 240
Query 239 AGACTACATCGGGACAGAGAGCTGCTTCGACATCCTCTCCGCTGACGAAGGGAACGATGT 298
|||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 241 TGACTACATCGGGACAGAGAGCTGCTTTGACGTCCTCTCCGCTGACGAAGAAAACGATGT 300
Query 299 TGTCTCCGTTGCGTCGGAGCCTGTAAAAAGCCGGTTTCGTTACGGTGGAAGgaggagaga 358
||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTCTCCGTTACGTCCGAGTCTGTAAAAAGCCGGTTTCGTTACGGTGGAAGGAGGAGAGA 360
Query 359 ggagagagaAGCTAGAGCTGCGGCGGCGCGTGAGTTTCCTCCTCCGATACCGTTGCTTGC 418
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 AGAGAGAGAAGCTAGAGCTGCGGCGGCGCGTGAGTTTCCTCCGCCGATACCGTTGCTTGC 420
Query 419 TCAGACGGGGAATCTTCTCCCGCACATGCCGTGGGTTCTCAAGCGTGTGGTGACCAGCGA 478
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 TCAGACGGGGAATCTCCTCCCGCACATGCCGTGGGTTCTCAAGCGTGTGGTGACGAGCGA 480
Query 479 CGGCAGGCTTATACTCAGAGAAGAGAAGGTTCGTCATCATGAGTATTTCCGTGCGAATAG 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGGAGGCTTATACTCAGAGAAGAGAAGGTTCGTCATCATGAGTATTTCCGTGCGAATAG 540
Query 539 ATCCAATGGTCGTCTCACTCTCCACCTTGTTCCTTTAGACGATGATGTTTTTGATCTTCC 598
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 541 ATCCAATGGTCGTCTCACTCTTCACCTTGTTCCTTTAGACGATGACGTTTTTGAACTTCC 600
Query 599 TCAAGAACCCTCTCATTACCAAAGtgatgatga-a--gaggatga------tg---atga 646
||||||||||||||||||||||||||||||||| | || ||||| || ||||
Sbjct 601 TCAAGAACCCTCTCATTACCAAAGTGATGATGATAACGATGATGAAGAGGATGGTGATGA 660
Query 647 --a-tgtgatgatgaggatgagtgcgatgatgatgatcagcaagaggtggaagatgattt 703
| ||||||||| ||||||| || ||||||||| | || ||||||||||||||||||||
Sbjct 661 TCAGTGTGATGATCAGGATGAATGTGATGATGATCAGCATCAAGAGGTGGAAGATGATTT 720
Query 704 ggatgatCTGGCGGATAAGATTAATAAGGATGTTACTA----T---T--AATGATGATGA 754
|||||||||||||||||||||||||||||||||| ||| | | |||||||||||
Sbjct 721 GGATGATCTGGCGGATAAGATTAATAAGGATGTTGCTAGCAATGCCTCTAATGATGATGA 780
Query 755 TAAGGGCAATGTGCATGGTGATAGTGATGATGGATATAGGAAGGTTATATTAGCGGCGGT 814
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 781 TAAGGGCAATGTGCATGGTGATAGTGAAGATGGATATAGAAAGGTTATCTTAGCGGCGGT 840
Query 815 GGGGGAGGAGACGGTGGTGGAGAGTGGAATGATGGTCGGAGGAGGAGGATCGCCGAGAGG 874
||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 841 GGGGGAGGAGACGGTGGGGGAGAGTGGAGTGATGGTCGGAGGAGGAGGATCGCCAAGAGG 900
Query 875 AAAGTGTTTGAAGTCATGTTTTGTTGGTATGAGAGTTCATGAGATAAGACCAGTTCTTAG 934
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 AAAGTGTTTGAAGTCTTGTTTTGTTGGTATGAGAGTTCGTGAGATAAGACCAGTTCTTAG 960
Query 935 TTGATAATTCTTATTATTA-TTAAGTAGTTCTTGTTGATTAGCATCTTTTT----GGGTG 989
||||| || ||||||||| ||| |||||||||||| |||||||||||||| |||||
Sbjct 961 TTGATTCTTATTATTATTAATTA-GTAGTTCTTGTTAATTAGCATCTTTTTTTTTGGGTG 1019
Query 990 GAAAACAAGATTATTATCTAAGAGAGTAATAAAATT 1025
|||||||||||||||||| ||||||| |||||||||
Sbjct 1020 GAAAACAAGATTATTATCGAAGAGAGCAATAAAATT 1055
Score = 590 bits (319), Expect = 2e-167
Identities = 494/572 (86%), Gaps = 38/572 (7%)
Strand=Plus/Plus
Query 1289 ATAAAATCGAATCGTAATTTCCTTTAAAGGAAAATAGTAGTAATTGAATAAAAAGATTTT 1348
|||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||
Sbjct 1195 ATAAAATCGAATCGTAATCTCCTTTAAAGGAAAATAATAGTAATTGAAT-AAAAGAATTC 1253
Query 1349 CAGAGAGCGAAGAAATGC---AAAGaaaaaaaaa-GGGAAGAAACATAACAGCGAATATT 1404
|| ||| ||||||||||| ||| ||||||||| |||||||||||||||||| ||||||
Sbjct 1254 CAAAGACCGAAGAAATGCAAAAAAAAAAAAAAAAGGGGAAGAAACATAACAGCTAATATT 1313
Query 1405 CGATAAACCATATGGTGC-AAGTGCAAACAGCTAATATTGTTATTCGTTTTTGGGGAGAA 1463
|||||| ||||||||||| ||||| ||||||||||||||||| ||| |||||| |||||
Sbjct 1314 CGATAATCCATATGGTGCAAAGTGAAAACAGCTAATATTGTTGTTCATTTTTGTAGAGAA 1373
Query 1464 TTTAAGTTTATAGGAAATTGATTTTGAATTGACTTCTACCTTAAAATCCAGCTATGTTCT 1523
||||| ||| |||||||| ||| |||||||||||| |||||| || || ||
Sbjct 1374 TTTAAATTTCTAGGAAATCGATATTGAATTGACTTATACCTT--AA---AG-TA------ 1421
Query 1524 CGTATCTATCACTTCAAAAATCGTATCTACTTA-AATACATATATATCCTGTAAGATAAA 1582
| | |||||||||||||||||||| | | | || | |||||||||||||||||||||
Sbjct 1422 --T-T-TATCACTTCAAAAATCGTATGT-CGAACAAAAAATATATATCCTGTAAGATAAA 1476
Query 1583 CGAGATCATTTTGAGTAAGAAATCAG-AA-GTAAACAAATATATAATCTTTTATA-C-aa 1638
|||| |||||||| ||| |||||||| || | || |||| || | || | | | ||
Sbjct 1477 CGAGGTCATTTTGTGTACGAAATCAGAAACG-AACCAAA-ATCTCAT-ACCAACACCAAA 1533
Query 1639 aaaaaaaaaactgaaaaagaaaagaagccaataagggagaataaaaggtacggagaaaaa 1698
|||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1534 AAAAAAAAAATTGAGAAA-AAGAGAAGCCAATAAGGGAGAATAAAAGGTACGGAGAAAAA 1592
Query 1699 TGTTAAGTACAGCTAAGATAAGAAAGATAGAGAGAGTTTCCCGATGAATATTAAGACAGA 1758
||| |||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||
Sbjct 1593 TGT-AAGTACAGCTAAGATA-GAAAGATAGAGAG--TTTCCCGATGAATTTTAAGACAGA 1648
Query 1759 GACACTTA-CTTAACTCTGTCTTCTGCAATTTGTCAGTTCCTCATCATTGGTCCTTTCCC 1817
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1649 GACACTTAACTTAACTCTGTCTTCTGTAATTTGTCAGTTCCTCATCATTGGTC-TTTCCC 1707
Query 1818 ACCACCTGATCTCTTGTCCTATATTCCCCTCC 1849
||||||||||||||||||||||||||||||||
Sbjct 1708 ACCACCTGATCTCTTGTCCTATATTCCCCTCC 1739
Score = 124 bits (67), Expect = 2e-27
Identities = 75/79 (95%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1059 tttttttCATGAGGAAATGTTGTTTATTTTTGTAATCTTCAGAGGCTATGGTGTAATTTA 1118
||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1054 TTTTTTTCATGAGAAAAAGTTGTTTGTTTTTGTAATCTTCAGAGGCTATGGTGTAATTTA 1113
Query 1119 TCTTCTTTTAGATGTTTTT 1137
||||||||||||||||||
Sbjct 1114 GCTTCTTTTAGATGTTTTT 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77323197350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5