BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22120.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313100 jgi|Araly1|313100|fgenesh1_pm.C_scaffold_1001880 1735 0.0
> Ahg313100 jgi|Araly1|313100|fgenesh1_pm.C_scaffold_1001880
Length=1365
Score = 1735 bits (939), Expect = 0.0
Identities = 1256/1402 (90%), Gaps = 50/1402 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTCAAACGACGATCTTGAATTTTCGTTCTTCGACTTACCAGAAACTTTTGGTGTT 60
|||||||||| ||||||||||||||||||||| || || ||||||||||||||||||| |
Sbjct 1 ATGGCTTCAAGCGACGATCTTGAATTTTCGTTTTTGGATTTACCAGAAACTTTTGGTGCT 60
Query 61 CTCACGGAGTGTG-GAGGAAATGCTTCGTTGCTGGTTTCAGAAAATGAACACAATGACCT 119
|| ||||||| || | ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 61 CTTACGGAGTATGTG-GGAAATGCTTCGTTGCTGGTTTCAGAAAATGAACAAAATGACTT 119
Query 120 TGTTGGATATAACCCTGTCTCTGCCGCCACAAGTGATGTGTT-TCCTTCACCACTAATAG 178
||||||||| | ||||||||||||| |||||||| |||| || |||| ||||||||||||
Sbjct 120 TGTTGGATACATCCCTGTCTCTGCCACCACAAGTAATGT-TTATCCTGCACCACTAATAG 178
Query 179 AGAATTCAAACACCGATC---A-A--GAGACATTGACAAGAACTTCATCAAGCTTTGATC 232
||||||||||||| |||| | | ||||||||||||||||| | |||||||||||||
Sbjct 179 AGAATTCAAACACTGATCAAGAGATCGAGACATTGACAAGAAC-T--TCAAGCTTTGATC 235
Query 233 AAGAGACAGCCATAGTAGCACACAATCAAAGCTTTCATCAAGATGACGACTATTCTAAGT 292
|||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||
Sbjct 236 AAGAGACAGCCATAGTAGCACACAATCAAAGCTTTCATCAGGAGGACGATTATGCTAAGT 295
Query 293 ATTTGACCACTGCAGAAAACTTTAATGACATGCCGTCGAGTGTATTTAGCAATGGCCAAA 352
|||| | ||| || ||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct 296 ATTTCAACACCGCCGAAAACTTTAATGACATATCGCCGAGTGTCTTTAGCAATGGCCAAA 355
Query 353 GAGAAAATGTGGACAGTGGAAGTTATGTCCTAACTTCGAGCAATCAAATGATGACTACTG 412
||||||||||| ||||||||| || ||||||||| |||||||||| || ||| | |
Sbjct 356 GAGAAAATGTGTACAGTGGAAATTGTGTCCTAACCTCGAGCAATC-AA--ATG---A-T- 407
Query 413 GACTACAATCAACTGATGTACAACATGGACCTCCAGAGCAAAGTTATCAACAACCTTTAT 472
| || | |||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 408 G---AC---C-ACTG--G-ACAACATGGACCTCTAGAGCAAAGTTATCAACAACCTTTAT 457
Query 473 TGTCTCAGACAATTCCCCATTTCTCTAACCAGCCATATGTTTCAACACTGGTAAGGAGTA 532
||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 458 TGTCTCAAACATTTCCCGATTTCTCTAACGAGCCATATGTTTCAACACTGGTAAGGAGTA 517
Query 533 ATATACAAGAAGTGGGGCA-AGCTAATGGACCTACAAATCTCAATCTAATTCATCATGGC 591
||||||||||| ||| | | |||||||||||||||||||||||||||||| || ||||||
Sbjct 518 ATATACAAGAAATGGAG-AGAGCTAATGGACCTACAAATCTCAATCTAATCCAGCATGGC 576
Query 592 CTTCAAGATCATCACTTTCATCCTTCTTTGTATCAGAAGGAACAATATAATCACACCGAC 651
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 577 CTTCAAGATCATCACTTCCATCCTTCTTTGTATCAGGAGGAACAATATAATCACACTGAC 636
Query 652 TCACTACTTGAACAAATCATGCGTATTCATGAAACTGAACATCAAATGCAACTACCAAAG 711
| ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 637 TTACTACTTGAACAACTCGTGCGAATTCATGAAACTGAACATCAAATGCAACTACCAAAA 696
Query 712 TTCACAAACATGTCTAGTACCCCAACATCAGTGGGGACACTGCTAAACAATCAATGCCTA 771
||| | |||||||| ||||||||||||||| |||||| |||||||||||||| |||||
Sbjct 697 TTCTCTAACATGTC---TACCCCAACATCAGTAGGGACATTGCTAAACAATCAAGGCCTA 753
Query 772 AGTCCTTTTGCATCGACTCCAACTATTTTGA-CGCATCCAGAGACAGGAAATTACTCACC 830
| ||||||||| |||||||||| || | | | || ||||||| ||||||| ||||||||
Sbjct 754 ATTCCTTTTGCCTCGACTCCAAATACTAT-ACCGAATCCAGACTCAGGAAACTACTCACC 812
Query 831 ATTTACGCATAGGTCATATCAGCCTGACTCATTTGCTTATGCCTTCCAAAAATCAAGCTC 890
||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 813 ATTTACGCAAAGGTCATATGAGCCTGACTCATTTGCTTATGCCTTCCAGAAATCAAGCTC 872
Query 891 GTTAAACCCTACTCGCCGGCCCCGTGGAAGGCCGAGGAGAATTCAAAGTGTTATGCCTCC 950
||||||||||||||| || |||||||||||||| |||||| ||||||||||||||||| |
Sbjct 873 GTTAAACCCTACTCGTCGCCCCCGTGGAAGGCCCAGGAGATTTCAAAGTGTTATGCCTTC 932
Query 951 GAGTTTGACAATTACAACACCACAA-AACATGTCTTTAGTACCTGCAATTCAAACCCTAT 1009
|||||||| ||||| |||||| || ||||||||||| |||||||||| |||||||||||
Sbjct 933 AAGTTTGACTATTACTACACCA-AATAACATGTCTTTGGTACCTGCAACTCAAACCCTAT 991
Query 1010 CAACACCTCCCAGTACGCCCTATCGCGCCCAAGAGAAGGGAAAACAACATGTTACAGCGA 1069
||| |||||||| ||| ||| |||||||| ||||||||||||||||||||||| |
Sbjct 992 TAACCCCTCCCAG---GCCTTAT---GCCCAAGATAAGGGAAAACAACATGTTACAGCAA 1045
Query 1070 TGCCGTCTTTGAACCCAACTCTCTACAATCAGTATCAAAATTCATACACAAACTCAATGA 1129
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1046 TGCCGTCTTTGAACCCAACTCTCTACAATCAGTATCAAAATTCATACCCAAACTCAATGA 1105
Query 1130 TCCAACAGGGTGGAGGTTTAAGCCAACGC-GATTGTTATGATCAATTTGAAAATGAAGGT 1188
|||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1106 TCCAACAGAGTGGAGGTTTAAGACAACGCAG-TTGTTATGATCAATTTGAAAATGAAGGT 1164
Query 1189 TCTTCGTCTAAAAGAAAGAG-GATCATGTTACCGTTTCAAGAAAAAAGTATAGCAGAATC 1247
||||||||||||| || ||| | |||||||||||||||||||||| ||||||||||| ||
Sbjct 1165 TCTTCGTCTAAAATAAGGAGAG-TCATGTTACCGTTTCAAGAAAATAGTATAGCAGATTC 1223
Query 1248 GTCGAGTGTATCTCTATGGCAAGATGGAAATAGGCGTTCAAGTGCGGCCAATAACAATGA 1307
|||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1224 ATCGAGTGTATCTCTTTGGCAAGATGGAAATAGGCGTTCAAGTGCGGCCAATCACCATGA 1283
Query 1308 GGAGAGGTTAGAAAATACAGTATACGATCCATTTTATGCAGGTGTTGGATTACCCCTTGA 1367
|| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1284 AGAAAGGTTAAAAAATGCAGTATACGATCCATTTTATGCAGGTGTTGGATTACCCATTGA 1343
Query 1368 TCCTCATTTGAGGTTCTTTTGA 1389
||||||||||||||||||||||
Sbjct 1344 TCCTCATTTGAGGTTCTTTTGA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5