BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22130.1
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912066 jgi|Araly1|912066|Al_scaffold_0001_2320 1646 0.0
Ahg476961 jgi|Araly1|476961|fgenesh2_kg.2__2091__AT1G77980.1 599 1e-170
> Ahg912066 jgi|Araly1|912066|Al_scaffold_0001_2320
Length=1008
Score = 1646 bits (891), Expect = 0.0
Identities = 972/1011 (96%), Gaps = 6/1011 (1%)
Strand=Plus/Plus
Query 6 ATGGGTCGGGTGAAATTAGAAATCAAGAGAATAGAGAACACAACGAATCGACAAGTTACG 65
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGTCGGGTGAAGTTAGAGATCAAGAGAATAGAGAATACAACGAATCGACAAGTTACG 60
Query 66 TTTTCAAAACGTAGAAATGGTTTGATTAAGAAAGCTTATGAATTGTCGATTCTTTGTGAT 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTCAAAACGTAGAAATGGTTTGATTAAGAAAGCTTATGAATTGTCGATTCTTTGTGAT 120
Query 126 ATCGACATTGCTCTTATCATGTTCTCTCCTTCTGATCGCCTTAGCCTTTTCTCCGGAAAA 185
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 ATCGACATTGCTCTCATTATGTTCTCTCCTTCTGATCGCCTTAGCCTCTTCTCCGGAAAA 180
Query 186 ACTCGGATTGAAGACGTTTTTTCAAGATTCATCAATCTTCCTAAACAAGAACGAGAGAGT 245
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTAGGATTGAAGACGTTTTTACAAGATTCATCAATCTTCCTAAACAAGAACGAGAGAGT 240
Query 246 GCTCTATAC-TTTCCTGACCAGAATAGACGCCCAGATATTCAAAACAAAGAGTGTCTACT 304
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTCTATACTTTTCC-GACCAGAATAGACGCCCAGATATTCAAAACAAAGAGTGTCTACT 299
Query 305 AAGGATTCTGCAGCAACTCAAGACTGAAAATGACATCGCTCTTCAAGTCACGAACCCTGC 364
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 300 AAGGATTTTGCAGCAACTCAAGTCTGAAAATGACATCGCTCTTCAACTCACGAACCCTGC 359
Query 365 AGCTATCAACTCTGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAACAACAACT 424
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGCTATTAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAACAACAACT 419
Query 425 CCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAATAAGATTCACGACCAT 484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 CCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAGTAAGATTCACGACCAT 479
Query 485 GGAGGAATACGAAGTTTCTGAGAAGCAACTTCTCGACACTCTAACACATGTTGTCCAACG 544
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 GGAGGAATACGAAGTTTATGAGAAGCAACTTCTCGACACTCTAACACATGTTGTCCAAAG 539
Query 545 GCGAGACCATCTCATGAGCAACCATTTATCTTCGTATGAAGCATCTACTATGCAACCAAA 604
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 540 GCGAGACCATCTCATGAGCAACCATTTATCTTCTTATGAAGCATCTACTATGCAA-CAAA 598
Query 605 -CATTGGTGGTCCTTTTGTAAATGACGTCGTTGAAGGTTGGCTACCTGAAAATGGGACC- 662
|||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||
Sbjct 599 GCATTGGTGGTCCTTTTGTTAACGACGGCGTTGAAGGTTGGCTACCTGAAAATGGG-CCT 657
Query 663 AATCAAACCCATTTGTTTGATGCATCGGCCCATTCTAACCAACTCAGAGAATTATCATCG 722
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 658 AATCAAACCCATTTATTTGATGCATCGGCCCATTCCAATCAACTCAGAGAATTATCATCG 717
Query 723 GCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATGAGT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATGAGT 777
Query 783 GAATGCCACGTGACGAACCACAATGGTGAAATGTTCCCTGAGTGGGCTCAGGCGTATTCA 842
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 778 GAATGCCACGTGACGAACCACAACGGTGAAATGTTCCCTGAGTGGGCTCAGGCGTATTCT 837
Query 843 TCCTCGGCCTTATTCGCTTCTATGCAGCAACAGCATGAAGGTGTGGGTCCCAGTATAGAA 902
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 838 TCCTCGGCCTTATTCGCTTCTATGCAACAACAGCATGGAGGTGTGGGTCCCAGTATAGAA 897
Query 903 GAGATGATGCCAGCTCAGCAGAGTGATATTCCGGGAGTGACGGCGGAGACACAAGTTGAT 962
|||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||
Sbjct 898 GAGATGATGCCAGCTCAGCAAAGTGATATTCCGGCAGTGACGGCGGAGGCACAACCTGAT 957
Query 963 CATGAAGTCTCCGACTATGAAACAAAGGTTCCTCAACTCAGTAGCCAATAA 1013
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 958 CATGAAGTCTCCGACTATGAAACAAAGGTTCCTCAGCTCAGTAGCCAATAA 1008
> Ahg476961 jgi|Araly1|476961|fgenesh2_kg.2__2091__AT1G77980.1
Length=1293
Score = 599 bits (324), Expect = 1e-170
Identities = 689/857 (80%), Gaps = 58/857 (7%)
Strand=Plus/Plus
Query 6 ATGGGTCGGGTGAAATTAGAAATCAAGA-GAATAGAGAACACAACGAATCGACAAGTTAC 64
|||||||| |||||||| || || || | ||||||| |||||||||||||||||||||||
Sbjct 1 ATGGGTCGAGTGAAATTGGAGAT-AAAACGAATAGAAAACACAACGAATCGACAAGTTAC 59
Query 65 GTTTTCAAAACGTA-GAAATGGTTTGATTAAGAAAGCTTATGAATTGTCGATTCTTTGTG 123
||| |||||| | | | |||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 60 GTTCTCAAAAAG-ACGTAATGGTCTGATAAAGAAAGCTTATGAATTGTCCATTCTTTGTG 118
Query 124 ATATCGACATTGCTCTTATCATGTTCTCTCCTTCTGATCGCCTTAGCCTTTTCTCCGGAA 183
| |||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 119 ACATCGACATTGCTCTCCTCATGTTCTCTCCCTCCGATCGCCTTAGCCTTTTTTCCGGCA 178
Query 184 AAACTCGGATTGAAGACGTTTTTTCAAGATTCATCAATCTTCCTAAACAAGAACGAGAGA 243
|||| |||| ||||||||||| ||||||| |||||||||| || | |||||||||||||
Sbjct 179 AAACAAGGATCGAAGACGTTTTCTCAAGATACATCAATCTTTCTGATCAAGAACGAGAGA 238
Query 244 GTGCTCTA-TACTTTCCTGACCAGAA-TAGACGCCCAGATATT-CAAAACAAAGAGTGTC 300
||||||| || || || || || || ||||||||||| || || | |||||||| ||
Sbjct 239 ATGCTCTAGTA-TTCCCCGATCA-AAGCCGACGCCCAGAT-TTCCAGAGCAAAGAGTATC 295
Query 301 TACTAAGGA-TTCTGCAGCAACTCAAGACTGAAAATGACATCGCTCTTCAAGTCACGAAC 359
|||| ||| || ||||||||||||||||||| ||||| || ||||||||| | || |||
Sbjct 296 TACTCCGGACTT-TGCAGCAACTCAAGACTGAGAATGATATTGCTCTTCAACTTACAAAC 354
Query 360 CCTGCAGCTATCAACTCTGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAACAA 419
||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 355 CCTACAGCTATCAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTATAAGTTACAACAA 414
Query 420 CAACTCCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAATAAGATTCACG 479
|| || || |||||||| ||||||||||| | ||||||||| |||||||| || || ||
Sbjct 415 CAGCTTCACATGGCAGAGGAAGAACTAAGAAAATACGAACCAGATCCAATCAGGTTTACA 474
Query 480 ACCATGGAGGAATACGAAGTTTCTGAGAAGCAACTTCTCGACA-CTCTAACACATGT-TG 537
|| ||||| || |||||| || ||||||||| || | || | || |||||| |||
Sbjct 475 ACAATGGAAGAGTACGAAACTTGTGAGAAGCAGCTAATGGATACCT-TAACACGTGTCAA 533
Query 538 TCCAACGGCGAGACCATCTCATGAG-CA--ACCATTTATCTTCGTATGAAGCATCTACTA 594
| ||||| || || ||| | |||| || | || |||||||| || ||||||||| |||
Sbjct 534 T-CAACGACGGGAACATATGTTGAGTCATGATCACTTATCTTCATACGAAGCATCTGCTA 592
Query 595 T---GCAAC--C-AAACATTGGTGGTCCTTTTGTAAATGACGTCGTTGAAGGTTGGCT-A 647
| |||| | |||||| ||||| ||||||||||| |||||||||| || ||||| |
Sbjct 593 TACAACAACAGCAAAACATGGGTGGACCTTTTGTAAACGACGTCGTTGGGGGATGGCTGA 652
Query 648 CCTGAAAATGGGACC-AATCAAACCCATTTGTTTGATGCATCGGCCCATTCTAACCAACT 706
||||||||||| || || ||| |||| ||| || ||| | || || | | |
Sbjct 653 -CTGAAAATGGG-CCTAACCAAGCCCA----TTT-AT---TCGACGCA-TC--AGC--C- 696
Query 707 CAGAGAATTATCATCGGCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAA 766
| | | ||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 697 C-----A-T-TCA---GCAATGTATGAAACGTTGTTGCAAGGAAGTAGCTCAAGCTCGAA 746
Query 767 CCAAAACAACATGA-G--TGAATGCCAC-GTGACGAACCACAATGGTGAAATGTTCCCTG 822
|||||||||||| | | ||||| ||| ||| | || || || ||||| ||||||| |
Sbjct 747 CCAAAACAACATTATGGGTGAAT-CCAATGTGTCAAATCATAACGGTGACATGTTCCAAG 805
Query 823 AGTGGGCTCAGGCGTAT 839
| ||||| ||||| |||
Sbjct 806 AATGGGCCCAGGCATAT 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37665441996
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5