BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22140.1

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912067 jgi|Araly1|912067|Al_scaffold_0001_2321                    363    9e-100


> Ahg912067 jgi|Araly1|912067|Al_scaffold_0001_2321
Length=219

 Score =  363 bits (196),  Expect = 9e-100
 Identities = 210/217 (97%), Gaps = 0/217 (0%)
 Strand=Plus/Plus

Query  55   ATGGGAGCCGGTAATGGAGAAACGCCAAAACCTACACAGATTTCAATTTCTAAAGATCAA  114
            |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATGGGAGCCGATAATGGAGAAACGCCAAAACCTACACAGATCTCAATTTCTAAAGATCAA  60

Query  115  TTCCTCGCTTGGAAACGCCAAAAGGATGCTGAGTTATTAGCCAAACAAGCTGAAGCAGCA  174
            |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct  61   TTCCTCGCGTGGAAACGCCAAAAGGATGCTGAGTTATTAGCTAAACAAGCTGAAGTAGCA  120

Query  175  AGGAAACGACAAGAGGACATAGCTTCAGGTCGTGTTCCAATGAATGGTCGTGAGCTTTTC  234
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGGAAACGTCAAGAGGACATAGCTTCAGGTCGTGTTCCAATGAATGGTCGTGAGCTTTTC  180

Query  235  TTGCATGAGCCTTGGGTTTTCGACGATACTCATCATT  271
            |||||||||||||||||||||||||||||||| ||||
Sbjct  181  TTGCATGAGCCTTGGGTTTTCGACGATACTCACCATT  217



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17246326228


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5