BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22160.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472449 jgi|Araly1|472449|fgenesh2_kg.1__2403__AT1G22160.1 1013 0.0
> Ahg472449 jgi|Araly1|472449|fgenesh2_kg.1__2403__AT1G22160.1
Length=713
Score = 1013 bits (548), Expect = 0.0
Identities = 674/730 (92%), Gaps = 27/730 (4%)
Strand=Plus/Plus
Query 1 ACTTCCCTCTTTCTCTCTTTCACTTTGCTCTGTTCACTCAGAGCATCAAATAAACAAAAG 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ACTTCCCTCTTTCTCTCTTTCACTTTGCTCTGTTCACTCAGAGCATC-AAGAAACAAAAG 59
Query 61 AGAGAAACCAAAACCACACAAGACTAACGATGTTGCTAGGGAAGAGACAGAGACCACCAA 120
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGAGAAACCAAAAACACACAATACTAACGATGTTGCTAGGGAAGAGACAGAGACCACCAA 119
Query 121 TAAAGAGAACCACGAGTCTATCTGAGATTAAGTTCGATTTGAATCAACCTAGCGAACAAG 180
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 120 TAAAGAGAACCACGAGTCTCTCTGAGATCAAGTTCGATTTGAATCAACCTAGCGAACAAG 179
Query 181 AACCATCCGATCATCAGATTCAGCTTGTGAACGTTGATGAACATCGTCAAGTTCATCAAA 240
|||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||
Sbjct 180 AACCATCCAATCATCAGATTCAGCTCGTGGCCGTTGATGAACACCGTCAAGTTCATCAAC 239
Query 241 GATTGTTAGATCAACGGCTTTTAGCGATGGTCTCACCAAGAGGTACACAGAGAAGACACT 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GATTGTTAGATCAACGGCTCTTAGCGATGGTCTCACCAAGAGGTACACAGAGAAGACACT 299
Query 301 CAAGTGATTATTCTGAAGATTTTCTAAGATCTTGCTCTCTTTGTAAACGTCTTCTTGTTC 360
|||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 300 CAAGTGATTACTCTGAAGATTTTCTGAGATCTTGCTCTCTTTGTAAACGTCATCTTGTTC 359
Query 361 ATGGCCGTGACATCTATATGTATAGAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTGGCCGTGACATCTATATGTATAGAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGC 419
Query 421 AACAACAAATTACAGTGGACGAGAGGAAGGAGAAGAAGAAAGGTTCGGTGAGGTCCACCA 480
|||||||||||||||||||||||| | | | ||| | ||||||||||||||||
Sbjct 420 AACAACAAATTACAGTGGACGAGA--A-G-A-AAG--G-----TTCGGTGAGGTCCACCG 467
Query 481 TCGTCGTCGCCACCGGAACCACCACAGGAGAGAGAGTTTCCGCCGCCGTGTAGGTCTCTT 540
||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 468 TCGTCGTAGCCGCCGGAACCACCACTGGAGAGAGAGTTTCCGCCGCCGTGTAGGTCTCTT 527
Query 541 TTACATATGTTATATATTATCGGTAATGATTGTATTATATG---G-TTCTTGT--TTT-A 593
| |||||| |||| || |||||||||||||||||||||||| | ||||||| ||| |
Sbjct 528 T-ACATATATTATGTAATATCGGTAATGATTGTATTATATGCCTGGTTCTTGTAATTTTA 586
Query 594 TGTATAAAAAGCATTGAGCACTATTGACTGTGATTAACCATGTTAATCATCCTTTAAACC 653
|||||||||||||||||| | | | |||||||||||||||||||||||||||| |||||
Sbjct 587 TGTATAAAAAGCATTGAGGA-T-T-GACTGTGATTAACCATGTTAATCATCCTATAAACT 643
Query 654 TTGCTTTTGATCTTAAGAATTATTGTATTATGCATATTAATTA---GATTTGTGTTCTAC 710
|||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 644 TTGCTTTTAATCTTAAGAATTATTGTGTTTTGCATATTAATTATTAGATTTGTGTTCTAC 703
Query 711 TGATTATTCT 720
||||||||||
Sbjct 704 TGATTATTCT 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5