BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22170.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472450 jgi|Araly1|472450|fgenesh2_kg.1__2404__AT1G22170.1 1821 0.0
Ahg316714 jgi|Araly1|316714|fgenesh1_pm.C_scaffold_2001747 850 0.0
> Ahg472450 jgi|Araly1|472450|fgenesh2_kg.1__2404__AT1G22170.1
Length=1222
Score = 1821 bits (986), Expect = 0.0
Identities = 1161/1242 (93%), Gaps = 25/1242 (2%)
Strand=Plus/Plus
Query 55 ttttttCTGTTGGGTAATTTTCTACTCGTCATTGGTTTCATCGACATTGA--ACTAGAAC 112
|||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1 TTTTTTGTGTTGGGTAA-TTTCTCCTCGTCATTGGTTTCATCGACATTGATTACTAGAAC 59
Query 113 CAGAATGGCTACTGCTACGTCTCACCAATCAGTCGTTTCATTTGCTTCTCTCCGGTCTTC 172
|||||||||||| ||||||| |||||||||| ||||||||||||| | ||| | | |
Sbjct 60 CAGAATGGCTACGGCTACGTTTCACCAATCAATCGTTTCATTTGC-T-TCT-C---C-T- 111
Query 173 TCCTTCTTCTACAATCTCTCAATGTGGATTCAAGATCGATTCTTCACTGAGCTTTACATC 232
| |||| | ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 112 T-CTTC--C-ACAATCTCTCAATGTGGATTCAAGATCGATTCTTCACTGAGTTTTACCTC 167
Query 233 GAAAAAGACAAACTTTTGCAAGATTAAAGCAATGGCATCATCAGTTTCTTATGACAACAC 292
||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 168 AAAAAAGATAAACTTTTGCAAGATTAAAGCAATGG---CATCAGTTTCTTATAACAACAC 224
Query 293 TCTCTTGTCTCCTTCCAAGACAATCCCTGACAATTCTCAAAAGAAATCAAATGAAGCAGC 352
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 225 TCTCTTGTCTCCTTCCAAGACCATCCCTGACAATTCTCTAAAGAAATCAAATGAAGCAGC 284
Query 353 TTTGATATTGATTAGGCATGGAGAATCTTTATGGAACGAGAAGAATCTTTTTACTGGTTG 412
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 285 TTTGATATTGATTAGGCATGGAGAATCTTTGTGGAACGAGAAGAATCTTTTTACGGGCTG 344
Query 413 TGTTGATGTGCCATTGACTGAGAAAGGTGTTGAAGAAGCTATTGAAGCAGGGAAGAGGAT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TGTTGATGTGCCATTGACTGAGAAAGGTGTTGAAGAAGCTATTGAAGCAGGGAAGAGGAT 404
Query 473 TAGTAACATTCCTGTTGATGTTATCTTTACATCTTCTTTGATTCGTGCTCAGATGACTGC 532
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 405 TAGTAACATACCTGTTGATGTTATCTTTACATCGTCTTTGATTCGTGCTCAGATGACTGC 464
Query 533 AATGCTTGCTATGATTCAACACCGTCGTAAGAAGGTACCGATCATCTTGCACGATGAAAG 592
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 465 AATGCTTGCTATGATTCAACACCGTCGTAAGAAGGTTCCGATAATCTTGCATGATGAAAG 524
Query 593 CGAACAGGCGAAAACTTGGAGTCAAGTTTTTAGTGATGAGACTAAAAACCAATCCATTCC 652
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 525 CGAACAGGCGAAAACTTGGAGTCAAGTTTTCAGTGATGAGACTAAAAACCAATCCATTCC 584
Query 653 TGTCATACCTGCTTGGCAGCTCAATGAAAGAATGTATGGAGAATTACAAGGTCTTAACAA 712
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 585 TGTCATACCCGCTTGGCAGCTTAATGAAAGAATGTATGGAGAATTGCAAGGTCTTAACAA 644
Query 713 GCAAGAAACAGCCGAGAGATATGGGAAAGAGCAAGTTCACGAATGGCGTAGGAGTTATGA 772
|||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 645 GCAAGAAACAGCGGAAAGATACGGGAAACAGCAAGTTCACGAATGGCGTAGGAGTTATGA 704
Query 773 TATTCCTCCTCCCAAAGGAGAGAGTTTGGAGATGTGTGCTGAGAGAGCAGTAGCTTATTT 832
||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 705 CATTCCTCCTCCCAAAGGCGAGAGCTTGGAGATGTGTGCTGAAAGAGCAGTGGCTTATTT 764
Query 833 TCAGGACAATATCGAACCGAAGCTTGCAGCTGGAAAGAACGTAATGATAGCTGCTCACGG 892
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TCAGGACAATATCGAACCAAAGCTTGCAGCTGGAAAGAACGTAATGATAGCTGCTCACGG 824
Query 893 GAACTCGCTGCGGTCTATCATTATGTATCTTGACAAATTGACTTGCCAGGAGGTGATAAG 952
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 825 GAACTCGCTGCGGTCTATCATAATGTATCTTGACAAATTGACTTGCCAGGAGGTGATAAG 884
Query 953 TCTAGAGCTATCGACAGGTATACCTCTTCTCTACATATTCAAAGAAGGCAAATTCATGAA 1012
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TCTAGAGCTATCGACCGGAATACCTCTTCTCTACATATTCAAAGAAGGCAAATTCATGAA 944
Query 1013 GCGGGGAAGCCCGGTTGGTCCAACAGAAGCTGGTGTTTATGCTTATACCAAGAGATTGGC 1072
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 945 GCGGGGAAGCCCGGTTGGTCCAACAGAAGCCGGTGTCTATGCTTATACCAAGAGATTGGC 1004
Query 1073 TCAATACAGACAGAAGCTAGAGGACGATAGTGAAGTACTCTGTGCCTGAAGTAAACTAGA 1132
|||||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||
Sbjct 1005 TCAATACAGACAGAAGCTAGAGGAAGACAGTGAAGTAATCTGTTCCTGAAGTAAACTAGA 1064
Query 1133 AA-ATTTGGTTCTTCATCTACTCAACTCTCTTCCCACAAGCTTAGGACCTTAGAGGC-GT 1190
|| ||| ||||||| ||||||||||| |||||||| ||| | ||||| ||||| ||| ||
Sbjct 1065 AAGATT-GGTTCTTGATCTACTCAACCCTCTTCCCTCAACCGTAGGAACTTAGGGGCAGT 1123
Query 1191 TTACAAAGAATACATAACTTCTGATTTTGTTCtttttttCTGGTTCTTCTT-CATTCATA 1249
|||||||| ||| |||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 1124 TTACAAAGCATATATAACTTCTGATCTTGTTCTTTTTTTCTGGTTCTTTTTTCATTCATA 1183
Query 1250 TGTGTCATAACCACCACTGTTACCTGAAGGATAATGTTCAAA 1291
||||||||| ||| |||||||||||||||||||||||||
Sbjct 1184 TGTGTCATATCCAT---TGTTACCTGAAGGATAATGTTCAAA 1222
> Ahg316714 jgi|Araly1|316714|fgenesh1_pm.C_scaffold_2001747
Length=999
Score = 850 bits (460), Expect = 0.0
Identities = 732/859 (85%), Gaps = 35/859 (4%)
Strand=Plus/Plus
Query 251 CAAGATTAAAGCAA-TGGCATCATCAG--TT-TCTT-ATGACAACACTCTCTTGTCTCCT 305
||||||| |||||| | || || |||| || |||| |||||||||| |||||||||||
Sbjct 126 CAAGATTGAAGCAACT-GCGTC-TCAGATTTCTCTTGTTGACAACACTTTCTTGTCTCCT 183
Query 306 TCCAAG-ACAATCCCTGACAA-T-TCTC-AAAAGAAATCAAATGAAGCAGCTTTGATATT 361
|||||| || | ||| ||| | || | |||||||||||||||||||||||||||||||
Sbjct 184 TCCAAGAAC-AGACCT--CAAGTATC-CAAAAAGAAATCAAATGAAGCAGCTTTGATATT 239
Query 362 GATTAGGCATGGAGAATCTTTATGGAACGAGAAGAATCTT-TTTACTGGTTGTGTTGATG 420
||||||||||||||| || |||||||| ||||||||| || ||||| |||||||||||||
Sbjct 240 GATTAGGCATGGAGAGTCGTTATGGAATGAGAAGAAT-TTGTTTACGGGTTGTGTTGATG 298
Query 421 TGCCATTGACTGAGAAAGGTGTTGAAGAAGCTATTGAAGCAGGGAAGAGGATTAGTAACA 480
||||||||||| |||||||||| | ||||||||||||||| ||||||| |||||| ||||
Sbjct 299 TGCCATTGACTCAGAAAGGTGTGGGAGAAGCTATTGAAGCTGGGAAGAAGATTAGCAACA 358
Query 481 TTCCTGTTGATGTT-ATCTTTACATCTTCTTTGATTCGTGCTCAGATGACTGCAATGCTT 539
| ||||| || || ||||| ||||| ||||| || |||||||||||||| |||||||||
Sbjct 359 TACCTGTAGAC-TTGATCTTCACATCATCTTTAATCCGTGCTCAGATGACCGCAATGCTT 417
Query 540 GCTATGATTCAACACCGTCGTAAGAAGGTACCGATCATCTTGCACGATGAAAGCG-AACA 598
|| |||| ||| || ||||| |||||||| || |||||||||||| |||| || | || |
Sbjct 418 GCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAATGAGAGTGTAA-A 476
Query 599 GGCGAAAACTTGGAGTCAAGTTTTTAGTGATGAGACTA-AAAACCAATCCATTCCTGTCA 657
|||||||||||||||||| || |||||||| || |||| ||||| |||| || || || |
Sbjct 477 GGCGAAAACTTGGAGTCATGTGTTTAGTGAAGAAACTAGAAAAC-AATCTATCCCGGTTA 535
Query 658 TACCTGCTTGGCAGCTCAATGAAAGAATGTATGGAGAATTACAAGGTCTT-AACAAGCAA 716
|| | ||||||||||| ||||| ||||||||||||||||| || ||| || |||||| ||
Sbjct 536 TAGCGGCTTGGCAGCTGAATGAGAGAATGTATGGAGAATTGCAGGGT-TTGAACAAGAAA 594
Query 717 GAAACAGCCGAGAGATATGGGAAAGAGCAAGTTCACGAATGGCGTAGGAGTTATGATATT 776
|||||||| || |||||||||| | | |||||||||||||||||||||||||| || |||
Sbjct 595 GAAACAGCGGAAAGATATGGGACACAACAAGTTCACGAATGGCGTAGGAGTTACGAAATT 654
Query 777 CCTCCTCCC-AAAGGAGAGAGTTTGGAGATGTGTGCTGAGAGAGCAGTAGCTTATTTTCA 835
||||| ||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||| |
Sbjct 655 CCTCC-CCCGAAAGGCGAGAGCTTGGAGATGTGCGCTGAGAGAGCAGTGGCTTATTTTGA 713
Query 836 GGACAATATCGAACC-GAAGCTTGCAGCTGGAAAGAACGTAATGATAGCTGCTCACGGGA 894
||||||||| |||| || ||||||| ||||||| || |||||||| |||||||||||||
Sbjct 714 AGACAATATCAAACCAGA-GCTTGCATCTGGAAACAATGTAATGATTGCTGCTCACGGGA 772
Query 895 ACTCGCTGCGGTCTATCATTATGTATCTTGACAAATTGACTTGC-CAGGAGGTGATAAGT 953
|||| |||| ||||||||||||||||| ||| | || |||| | |||||||| | || |
Sbjct 773 ACTCATTGCGATCTATCATTATGTATCTGGACGATTTAACTT-CTCAGGAGGTTACAACT 831
Query 954 CTAGAGCT-ATCGACAGGTATACCTCTT-CTCTACATATTCAAAGAAGGCAAATTCATGA 1011
||||| || ||| || ||| |||| || |||||||| |||||||||||||| |||||||
Sbjct 832 CTAGA-CTTATCCACGGGTGTACCA-TTGCTCTACATCTTCAAAGAAGGCAAGTTCATGA 889
Query 1012 AGCGGGGAAGCCCGGTTGGTCCAACAGAAGCTGGTGTTTATGCTTATACCAAGAGATTGG 1071
| || ||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||||
Sbjct 890 AACGAGGAAGCCCGGTCGGTCCTACTGAAGCTGGTGTCTATGCTTATACAAAGAGATTGG 949
Query 1072 CTCAATACAGACAGAAGCT 1090
| ||||||||| |||||||
Sbjct 950 CACAATACAGAGAGAAGCT 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5