BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22180.2
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921232 jgi|Araly1|921232|scaffold_102513.1 1463 0.0
> Ahg921232 jgi|Araly1|921232|scaffold_102513.1
Length=991
Score = 1463 bits (792), Expect = 0.0
Identities = 915/975 (94%), Gaps = 6/975 (1%)
Strand=Plus/Plus
Query 236 TTTCCAGCAAGATATGAATTCTGATT-CTAATAAATCATCTTCAAATGGATTTGAGAAAT 294
||| ||| |||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 9 TTT-CAGAAAGATATGAATTCTGATTAC-GATAAATCATCTTCAAATGGAATTGAGAAAT 66
Query 295 CTTTGACACCAGAGGAGTATCTAAACAAGATAAATGAAGTGAGGACATTACTAGGGCCAT 354
||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 67 CTTTGCCACCAGACGAGTATCTAAACAAGATAAATGAAGTGAGGACTTTGCTAGGGCCAT 126
Query 355 TGACTGAGAAGTCATCTGAGTTTTGTTCAGATGCCGCCATTACTCGGTATTTGGCTGCGC 414
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 127 TGACTGAGAAGTCATCTGAGTTTTGTTCAGATGCTGCCATTACTCGGTATTTAACTGCGC 186
Query 415 GTAACGGCCATGTCAAGAAAGCAACTAAAATGCTTAAAGAAACACTAAAATGGAGGGCTC 474
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 187 GTAATGGCCATGTCAAGAAAGCTACTAAAATGCTTAAAGAAACACTAAAATGGAGGGCTC 246
Query 475 AATACAAACCTGAGGAGATTCGATGGGAGGAGATAGCACGAGAAGCTGAGACCGGAAAAA 534
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 247 AGTACAAACCTGAGGAGATTCGATGGGAGGAGATTGCACGAGAAGCTGAGACCGGGAAAA 306
Query 535 TATACCGAGCTAATTGTACCGATAAGTATGGAAGAACAGTTCTTGTTATGAGACCAAGTT 594
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 307 TATACCGAGCTAATTGTACCGATAAGTATGGAAGACCAGTTCTTGTTATGAGACCAAGTT 366
Query 595 GCCAGAATACAAAATCATATAAAGGGCAGATTAGAATCTTGGTGTACTGTATGGAAAATG 654
||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 367 CCCAGAATACGAAATCGTATAAAGGGCAGATTAGATTCTTGGTGTACTGCATGGAAAATG 426
Query 655 CAATCTTGAACCTACCAGATAACCAAGAGCAAATGGTTTGGCTAATCGATTTTCACGGTT 714
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 427 CAATCTTGAATCTACCAGACAACCAAGAACAAATGGTTTGGCTAATCGATTTTCACGGTT 486
Query 715 TCAACATGTCTCATATCTCCTTGAAAGTGTCTCGAGAAACCGCTCATGTGTTACAAGAAC 774
|||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 487 TCAACATGTCGCATATATCCGTGAAAGTGTCTCGAGAAACCGCTCATGTGTTACAAGAAC 546
Query 775 ATTACCCTGAACGCTTAGGCTTGGCCATTGTATACAACCCGCCTAAGATTTTTGAGTCGT 834
||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 547 ATTACCCTGAACGGTTAGGCTTGGCCATAGTATACAACCCGCCTAAGATTTTCGAATCGT 606
Query 835 TTTATAAGATGGTGAAACCATTTTTAGAGCCAAAGACCAGCAACAAGGTGAAATTTGTCT 894
||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||
Sbjct 607 TTTATAAGATGGTGAAACCATTTCTAGAACCAAAGACCTGCAACAAGGTGAAATTTGTCT 666
Query 895 ACTCAGATGATAACCTCAGCAACAAGCTTCTGGAGGATCTTTTCGATATGGAGCAACTCG 954
|||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 667 ACTCCGATGATAACATCAGCAAAAAGCTTCTCGAGGATCTTTTCGATATGGAGCAACTAG 726
Query 955 AGGTTGCATTTGGTGGAAAAAACAGCGATGCGGGTTTCAATTTTGAGAAATATGCTGAGA 1014
||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 727 AGGTTGCGTTTGGTGGAAAAAACAGCGATGCGGGGTTCAGTTTTGAGAAATATGCTGAGA 786
Query 1015 GAATGAGAGAGGATGATTTGAAGTTCTATGGAAACACCACAGTGTCATCAACCTCAGCTC 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 787 GAATGAGAGAGGATGATTTGAAGTTCTATGGAAACACCACAGTGTCATCAACCTCATCTC 846
Query 1075 ATTTGACTAACTCAGATTCTGAAGTTTCAGACTCTGAGATGAAGTATTTGGAGGACAAAG 1134
||||||| ||||||||||||||||||| ||||||||| |||||| | |||||||||||||
Sbjct 847 ATTTGACCAACTCAGATTCTGAAGTTTTAGACTCTGAAATGAAGCAATTGGAGGACAAAG 906
Query 1135 AAGATGAGACTAT-AGAGAATGGAACTTTGCAATCTCCTTTAGATACAACAAAAACCTAA 1193
||||||||| || | |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 907 AAGATGAGAAGATCA-AGAACGGAACTTTGCATTCTCCTTTAGATACAACAAAAACCTAC 965
Query 1194 ACATGAAATCCTAAA 1208
||||||| ||||||
Sbjct 966 ACATGAAG-CCTAAA 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48568596258
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5