BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22190.1
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472454 jgi|Araly1|472454|fgenesh2_kg.1__2408__AT1G22190.1 1687 0.0
Ahg476975 jgi|Araly1|476975|fgenesh2_kg.2__2105__AT1G78080.1 206 5e-52
> Ahg472454 jgi|Araly1|472454|fgenesh2_kg.1__2408__AT1G22190.1
Length=1386
Score = 1687 bits (913), Expect = 0.0
Identities = 1191/1317 (90%), Gaps = 52/1317 (4%)
Strand=Plus/Plus
Query 9 CCAAGCTAATGAGATAAGTGTATCGGTGAGGCTGAGAGTTATTCACTTACaaaaaaaaaa 68
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 CCAAGCTAATGAGATTAGTGTATCGGTGAGGCTGAGAGTTATTCACTTACAAAAAAAAAA 62
Query 69 aaaa-acttgagtgtaaccaaaaaaaaaaGTTGATATACTTTCTGGTTTTCTCCTTAAC- 126
|||| ||||||| | || |||||||||||||||||| ||||||| ||||||||| |||
Sbjct 63 AAAACACTTGAGGGCAATAAAAAAAAAAAGTTGATATTCTTTCTGATTTTCTCCTGAACT 122
Query 127 TTTTATTCTTTACAAATCCATCCCCCTTAGATCTGTTTATTTCCCGCTACTTTGATTCAT 186
||||||||| | |||||||| ||||| ||||||||||||||||||||||||| || ||
Sbjct 123 TTTTATTCTGTGCAAATCCACCCCCCATAGATCTGTTTATTTCCCGCTACTTCGA-TC-- 179
Query 187 TTCTGTTAGTAATCTGTCTTTCGTATAGAAGAAAACTGATTTCTTGGTTTGTATTTTCTT 246
| || | || | || ||| | ||||| |||||||||||||||||||||||
Sbjct 180 --C--------AT-T-TC--T-GT-TAG-A-AAAACCGATTTCTTGGTTTGTATTTTCTT 221
Query 247 AAAGAGATCAATCtttttttatttttgatcttcttgtgtttttttttctttGTAGAATTA 306
||| ||||||| |||||||||| |||||||||||| |||||||||||||||||| |||
Sbjct 222 AAATTTATCAATC-TTTTTTATTTCTGATCTTCTTGT-TTTTTTTTTCTTTGTAGATTTA 279
Query 307 ATCGTTTGTGAGGGTAtttttttAATTCCCTCCTCTCAGAAATCTACACAGAGGtttttt 366
||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 280 ATCGTTTGTGAGGGTATTTTTTT-ATTCCCTCCTCTCAG--ATCTACACAGAGGTAGTTT 336
Query 367 attttataaacctctttttcgattttcttgaaaacaaaaaatcctgttctttactttttt 426
|||||||||||||||||||||| ||||||| | ||||||||||||||||||| |||||
Sbjct 337 ATTTTATAAACCTCTTTTTCGAATTTCTTG---A-AAAAAATCCTGTTCTTTAC-TTTTT 391
Query 427 tACAAGAACAAGGGaaaaaaaTT-TC--------TTTTTATTAGAAATGACAACTTCTAT 477
| ||||||| | ||||||||||| || ||||||||| ||||||||||||||||
Sbjct 392 T-CAAGAACCA-GGAAAAAAATTCTCGAATTTAATTTTTATTATAAATGACAACTTCTAT 449
Query 478 GGATTTTTACAGTAACAAAACGTTTCAACAATCTGATCCATTCGGTGGTGAATTAATGGA 537
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 GGATTTCTACTGTAACAAAACGTTTCAACAATCTGATCCATTCGGTGGTGAATTAATGGA 509
Query 538 AGCGCTTTTACCTTTTATCAAAAGCCCTTCCAACGATTCATCCGCGTTTGCGTTCTCTCT 597
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 510 AGCGCTTTTACCTTTTATCAAAAGCTCTTCCAACGATTCTTCCGCGTTTGCGTTCTCTCT 569
Query 598 ACCCGCTCCAATTTCATACGGGTCGGATCTCCACTCATTTTCTCACCATCTTAGTCCTAA 657
||| | ||| ||| ||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 570 ACCTGATCCGATTCCATACGGGTCGGACCTCCACTCGTTCTCTCACCATCTTAGTCCTAA 629
Query 658 ACCGGTCTCAATGAAACAAACCGGTACTTCCGCGGCTAAACCGACGAAGCTATACAGAGG 717
||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||
Sbjct 630 ACCGGTCTCAATGAAACAAACCGGTTCTTCAGCGCCTAAACCGACGAAGCTATACCGAGG 689
Query 718 AGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATTCGTTTACCGAGGAATCGAAC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 AGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATTCGTTTACCGAGGAATCGAAC 749
Query 778 TCGACTTTGGCTCGGAACATTCGACACGGCGGAGGAAGCTGCTTTAGCTTATGACAAGGC 837
||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 750 TCGGCTTTGGCTCGGAACATTCGATACGGCGGAGGAAGCTGCATTAGCCTATGACAAGGC 809
Query 838 GGCGTATAAGCTCCGAGGAGATTTTGCGC-GGCTTAATTTCCCTGATCTCCGTCATAACG 896
|||||||||||| || || ||||| || | |||||||||||||| |||||||||||||||
Sbjct 810 GGCGTATAAGCTGCGCGGCGATTTCGC-CAGGCTTAATTTCCCTAATCTCCGTCATAACG 868
Query 897 ACGAGTATCAACCTCTTCAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAACT 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 GCGAGTATCAACCTCTTCAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAACT 928
Query 957 TAGCTGAGACGACGCAGAAACAGGTGAGATCAACGAAGAAGTCTTCTTCTCGGAAACGTT 1016
||||||||| ||| || ||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 929 TAGCTGAGATGACTCAAAAACAGGGGAAATCAACGAAGAAGTCTTCTTCCCGGAAACGTT 988
Query 1017 CATCAACCGTCG-CAGTGAAACTACCGGAGGAGGACTACTCTAGCGCCGGATCTTCGCCG 1075
||||||||| || | | ||||| |||||||||||| ||||||||||| || |||||||||
Sbjct 989 CATCAACCGCCGTC-GCGAAACAACCGGAGGAGGATTACTCTAGCGCTGGTTCTTCGCCG 1047
Query 1076 CTGTTAACGGAGAGTTATGGATCTGGTGGATCTTCTTCGCCGTTGTCGGAGCTGACGTTT 1135
| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1048 CCGTTAACGGAGAGTTACGGATCTGGTGGATCTTCTTCGCCGTTGTCGGATCTGACGTTT 1107
Query 1136 GGTGATACGGAGGAGGAGATTCAGCCGCCGTGGAACGAGAACGCGTTGGAGAAGTATCCG 1195
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1108 GGTGATACGGAGGAGGAGATTCAGCCGCCGTGGAATGAGTTTGCGTTGGAGAAGTATCCG 1167
Query 1196 TCGTACGAGATCGATTGGGATTCGATTCTTCAGTGTTCGAGTCTTGTAAATTAGATGTTG 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1168 TCGTACGAGATCGATTGGGATTCGATTCTTCAGTGTTCGAGTCTTGTAAATTAGTTGATG 1227
Query 1256 CCATAGGGGTATTTTAGGGACT-TTAGA-GCTCTCTGCGATGGAGTTTTTGGTCATT 1310
|| ||||||||||||||| | | ||||| | || |||| ||||||||||||||||||
Sbjct 1228 CCGTAGGGGTATTTTAGGAA-TATTAGATG-TCACTGCAATGGAGTTTTTGGTCATT 1282
> Ahg476975 jgi|Araly1|476975|fgenesh2_kg.2__2105__AT1G78080.1
Length=1370
Score = 206 bits (111), Expect = 5e-52
Identities = 256/321 (80%), Gaps = 29/321 (9%)
Strand=Plus/Plus
Query 698 CCGACGAAGCTATACAGAGGAGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATT 757
||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 795 CCGACGAAGCTTTACAGAGGTGTGAGGCAACGTCACTGGGGTAAATGGGTGGCTGAGATC 854
Query 758 CGTTTACCGAGGAATCGAACTCGACTTTGGCTCGGAACATTCGACACGGCGGAGGAAGCT 817
||||| ||||||||||| ||||| || ||||| || || || ||||||||||||||||||
Sbjct 855 CGTTTGCCGAGGAATCGGACTCGTCTCTGGCTTGGGACCTTTGACACGGCGGAGGAAGCT 914
Query 818 GCTTTAGCTTATGACAAGGCGGCGTATAAGCTCCGAGGAGATTTTGCGCGGCTTAATTTC 877
|| | || ||||| ||||||||||||||||| || || ||||| || |||||||| |||
Sbjct 915 GCGCTGGCCTATGATAAGGCGGCGTATAAGCTGCGCGGCGATTTCGCCCGGCTTAACTTC 974
Query 878 CCTGA--T-C-TC----C-G---TCATAAC-GA--CGA-----GT--AT-C-AACCTCTT 913
||| | | | || | | ||| | | || ||| || || | ||||||||
Sbjct 975 CCTAACCTACGTCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATACAAACCTCTT 1034
Query 914 CAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAA-CTTAGCTGAGACGACGCA 972
|| || |||||||||||||||||||||||||||||| |||| | | || | || ||| ||
Sbjct 1035 CACTCTTCAGTCGACGCTAAGCTTGAAGCTATTTGT-AAAAGCATGGC-G-GA-GACTCA 1090
Query 973 GAAACAGGTGAGATCAACGAA 993
|||||||| || | | |||||
Sbjct 1091 GAAACAGGAGAAACCGACGAA 1111
Score = 97.1 bits (52), Expect = 3e-19
Identities = 99/119 (83%), Gaps = 13/119 (11%)
Strand=Plus/Plus
Query 1109 TCTTCGCCGTTGTCGGAGC-TGACGTTTGGTGATACGGAGGAGGAGATTCAGCCGCCGTG 1167
||||||||||||||||| | |||| || | |||| | ||||||| | ||||| |||
Sbjct 1257 TCTTCGCCGTTGTCGGA-CTTGACCTTCGCTGAT-C--CGGAGGAG---CCGCCGCAGTG 1309
Query 1168 GAACGAGAACG----CGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATT 1222
||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1310 GAACGAG-ACGTTCTCGTTGGAGAAGTTTCCGTCGTACGAGATCGATTGGGATTCGATT 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56411652845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5