BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22200.1
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472456 jgi|Araly1|472456|fgenesh2_kg.1__2410__AT1G22200.1 2436 0.0
> Ahg472456 jgi|Araly1|472456|fgenesh2_kg.1__2410__AT1G22200.1
Length=1494
Score = 2436 bits (1319), Expect = 0.0
Identities = 1440/1496 (96%), Gaps = 17/1496 (1%)
Strand=Plus/Plus
Query 11 TTCTCT-TTAGCTTATTTTTGGGGAAGACAATTCCGAGAAAATAGAGAGT--------AG 61
|||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 TTCTCTCTT-GCTTATTTTTGGGGAAGACAATTCCGAGAAAATAGAGAGTAGAAGAGAAG 60
Query 62 AGAGATCCT-AAAGAGTCAAAAGAGGTCAGGTGATTGATTAACCCGTTGAATAATCTCCT 120
||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 AGAGATCCTAAAAG-GTCAAAAGAGGTCAGGTGATTGATTAACCCGTTGAATCATCTCCT 119
Query 121 TCTCCCGTTGAATCGGGTCGAAATAG-TTGAACTTTAAGCCAAACCCTAGCTTGAGGAGG 179
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 120 TCTCCCGTTGAATCGGGTCAAAATAGTTTGAACTTTAAGCCAAACCCTAGCTTGAGGAGG 179
Query 180 AAGA-GGAATGGTCGGCGTGATGAACAGATTGAGGAATCTGGACGCTTACCCTAAAATCA 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGAGGGAATGGTCGGCGTGATGAACAGATTGAGGAATCTGGACGCTTACCCTAAAATCA 239
Query 239 ATGAAGATTTCTACAGGCGTACTCTTTCTGGTGGTGTTATCACCCTCGCCTCTTCTATT- 297
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 240 ATGAAGATTTCTACAGGCGTACTCTTTCTGGTGGTGTTATCACCCTTGTCTCTTCT-TTC 298
Query 298 GTCATGCTAATTCTCTTCTTCTCCGAGCTTCAGCTGTACATTCACCCGGTTACTGAGACT 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 GTCATGCTAATTCTCTTCTTCTCCGAGCTTCAGCTGTATATTCACCCGGTTACTGAGACT 358
Query 358 CAGCTTCGTGTTGATACATCAAGAGGAGAGAAGCTACGGATTAATTTTGATGTTACATTC 417
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 359 CAGCTTCGTGTTGATACATCAAGAGGAGAGAAGCTACGCATTAATTTTGATGTTACATTC 418
Query 418 CCTGCGCTTCAATGTTCGATTATTAGTCTTGATTCCATGGATATCAGTGGGGAGAGGCAC 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 CCTGCGCTTCAATGTTCGATTATTAGTCTTGATTCCATGGATATCAGTGGAGAGAGGCAC 478
Query 478 CTTGATGTGCGACATGACATTATTAAAAGGAGATTAGACTCTTCTGGCAATGTCATCGAG 537
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 479 CTTGATGTGCGACATGACATAATTAAAAGAAGATTAGACTCTTCTGGCAATGTGATCGAG 538
Query 538 GCAAAACAAGACGGAATTGGTCATACTAAGATTGAAAAACCTTTACAAAAACATGGTGGA 597
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 GCAAAACAAGATGGAATTGGTCATACTATGATTGAAAAACCTTTACAAAAACATGGTGGA 598
Query 598 AGGTTGGAACACAATGAAACATACTGTGGTTCCTGTTTTGGAGCAGAAGCGTCAGATGAT 657
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 599 AGGTTGGAGCACAATGAAACATACTGTGGTTCCTGTTTTGGAGCCGAAGCGTCAGATGAT 658
Query 658 GCTTGTTGTAATTCATGTGAGGAAGTTCGCGAAGCTTACCGAAAGAAAGGTTGGGCCCTC 717
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 659 GCTTGTTGTAATTCATGTGAGGAAGTTCGTGAAGCTTACCGAAAGAAAGGTTGGGCCCTC 718
Query 718 TCGGACCCTGAATCAATCGACCAGTGTAAAAGAGAAGGCTTTGTGCAAAAGGTAAAAGAT 777
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 719 TCAGACCCTGAATCAATCGACCAGTGTAAAAGAGAAGGCTTTGTGCAAAAGGTCAAAGAC 778
Query 778 GAAGAAGGTGAAGGTTGTAATGTTCACGGTTTCTTGGAAGTTAACAAAGTTGCTGGGAAC 837
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 779 GAAGAAGGTGAAGGTTGTAATGTTCATGGTTTCTTGGAAGTTAATAAAGTTGCTGGGAAC 838
Query 838 TTTCATTTCATTCCTGGGCAAAGCTTTCATCAATCCGGTTTTCAATTTCATGATATGTTA 897
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTCATTTCATCCCTGGGCAAAGCTTTCATCAATCCGGTTTTCAATTTCATGATATGTTA 898
Query 898 TTGTTCCAGCAAGGCAACTACAATATTAGCCACAAGGTCAACAGGTTGGCCTTTGGAGAC 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 899 TTGTTCCAGCAAGGCAACTACAATATTAGCCACAAGGTCAACAGGTTGGCCTTTGGGGAC 958
Query 958 TTTTTCCCCGGTGTAGTGAACCCTCTTGATGGTGTGCAGTGGAATCAGGGGAAACAGAGT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTTTTCCCCGGTGTAGTGAACCCTCTTGATGGTGTGCAGTGGAATCAGGGGAAACAGAGT 1018
Query 1018 GGCGTCTATCAATACTTCATCAAGGTGGTACCAAGCATATACACCGATGTTCACCAGAAT 1077
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1019 GGCGTCTATCAATACTTCATCAAGGTGGTACCAAGCATATACACTGATGTTCACCAGAAT 1078
Query 1078 ACAATACAGTCAAACCAGTTCTCTGTGACAGAACATTTCCAGAACATGGAAGCAGGTCGC 1137
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1079 ACAATTCAGTCAAACCAGTTCTCTGTGACAGAACATTTCCAAAACATGGAAGCAGGTCGC 1138
Query 1138 ATGCAATCTCCGCCTGGTGTTTTCTTCTACTATGATCTATCGCCAATTAAGGTGATATTT 1197
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1139 ATGCAATCTCCGCCTGGTGTTTTCTTCTACTATGATCTATCGCCGATTAAGGTGATATTT 1198
Query 1198 GAGGAGCAACATGTGGAGTTCTTGCACTTCCTAACAAATGTTTGCGCTATAGTAGGAGGT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1199 GAGGAGCAACATGTGGAGTTCTTGCACTTCCTAACAAATGTTTGCGCTATAGTTGGAGGT 1258
Query 1258 ATCTTCACGGTATCGGGAATAGTAGATTCGTTCATATACCATGGACAACGAGCAATTAAG 1317
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATCTTCACGGTATCAGGAATAGTAGATTCGTTCATATACCATGGACAACGAGCAATTAAG 1318
Query 1318 AAGAAAATGGAGATTGGTAAATTCAACTGAGTTGTTTGATATTCTCCACACTTTCTTGAT 1377
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1319 AAGAAAATGGAGATTGGTAAATTCAACTGAGTTGTTTAATATCCTCCACACTTTCTTGAT 1378
Query 1378 CAGCTACTGGAGAATCATCTCTACGGGTTTTACAGTTAGACATTAGGTTTGAATTTG-TG 1436
|||| ||||| |||||||||| |||| |||||| ||||||||||||||||||||||| ||
Sbjct 1379 CAGCGACTGGGGAATCATCTCGACGGCTTTTACGGTTAGACATTAGGTTTGAATTTGGTG 1438
Query 1437 ACAATGCGATGATTTAAAGAATTTTGTAGTACTGTAAGATATTCCAGGATCTGAAC 1492
||||| |||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1439 ACAATACGATGATTTAAAGAATTTTGCAGTACTGTAAGATATTTAAGGATCTGAAC 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60449218815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5