BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22210.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313108 jgi|Araly1|313108|fgenesh1_pm.C_scaffold_1001888 1531 0.0
Ahg476976 jgi|Araly1|476976|fgenesh2_kg.2__2106__AT1G78090.1 516 2e-145
> Ahg313108 jgi|Araly1|313108|fgenesh1_pm.C_scaffold_1001888
Length=990
Score = 1531 bits (829), Expect = 0.0
Identities = 941/995 (95%), Gaps = 7/995 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATTACGGATATTTCCGGAAAGATCGAGACTTTGGTTGATTCCTTAAGGGATATG 60
||||||||||||||| | | |||||||||||||||||||| ||||| || |||||||||
Sbjct 1 ATGAAGATTACGGATGCTGCGGGAAAGATCGAGACTTTGGTCGATTCATTGAGGGATATG 60
Query 61 TCCCCGACCCGTGTCAGATCTTCCTTCTCTGATGAACATGTATCCGAGAACGATGACGAG 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TCCCCGACCCGTGTCAGATCTTCCTCCTCTGATGAACATGTATCCGAGAACGATGACGAG 120
Query 121 AGAAGCTCCTGGATTGCTCTTCATCCGTCAGCATTGGATATGTTCGAAC-AAATCATG-C 178
||||||||||||||||| | ||||||||| ||||| |||||||||| || |||||||| |
Sbjct 121 AGAAGCTCCTGGATTGCACGTCATCCGTCCGCATTAGATATGTTCG-ACAAAATCATGAC 179
Query 179 GTGATGCTGAAGGCAAACAAATTATTATGTTTCTTGATTACGACGGAACTCTCTCGCTAA 238
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 180 -TGATGCAGAAGGCAAACAAATTATTATGTTTCTTGACTACGATGGAACTCTCTCACTAA 238
Query 239 TCACTGAAGATCACGACAGAGCCTACATAACCGACGAGATGCGAGAAGTTGTAAAGGAAG 298
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 TCACTGAAGATCACGACAAAGCTTACATAACCGACGAGATGCGAGAAGTTGTAAAGGAAG 298
Query 299 TGGCTACATATTTCAAGACAGCGATCATCAGCGGACGAAGCACTGACAAAGTACAGAGTT 358
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TGGCTACGTATTTCAAGACTGCGATCATCAGCGGACGAAGTACTGACAAAGTACAGAGTT 358
Query 359 TTGTGAAACTCACTGGTATTCACTACGCTGGGAGCCACGGCATGGACATTAAGGGTCCGA 418
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 359 TTGTGAAACTCACTGGAATTCACTACGCCGGTAGCCACGGCATGGACATTAAGGGTCCGA 418
Query 419 CAAATACCGATCAGAGTAACCAAGAAGAAGTGATGTTTCAACCTGCAAGTGACTATTTAC 478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 CAAATACCGATCAGAGTAACCAAGGAGAAGTGATGTTTCAACCTGCAAGTGACTATTTAC 478
Query 479 CGATGATTGACGAGGTGGTTAATGTTTTGAAGGAAAAGACAAAATCTATCCCTGGAGCTA 538
|||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 479 CGATGATTGACGAGGTGGTTAACGTTTTAAAGGAAAAGACAAAATTTATCCCTGGAGCTA 538
Query 539 CGGTCGAGCACAACAAGTTTTGTCTAACAGTACATTTTCGTCGGGTCGATGAAACGGGAT 598
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 539 CGGTCGAGCACAACAAGTTTTGTCTAACAGTACATTTTCGTCGCGTTGATGAAACGGGAT 598
Query 599 GGGCTGCATTAGCTGAGCAAGTGAGATTGGTTCTCATTGATTATCCGAAATTGAGACTGA 658
|||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 GGGCTGCACTAGCCGAGCAAGTGAGATTGGTTCTCATTGATTATCCCAAATTGAGACTGA 658
Query 659 CACAAGGCAGAAAGGTCTTAGAACTCCGACCTTCCATCAAATGGGACAAGGGAAAGGCTC 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CACAAGGCAGAAAGGTGTTAGAACTCCGACCTTCCATCAAATGGGACAAGGGAAAGGCTC 718
Query 719 TCGAATTTTTGCTAAACTCATTAGGGATAGCAGAATCTAAAGATGTTTTACCGGTTTACA 778
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 719 TTGAATTTTTGCTAAAGTCATTAGGGATAGCTGAATCTAAAGATGTTTTACCGGTGTACA 778
Query 779 TTGGAGATGACCGTACTGATGAAGATGCATTTAAGGTTTTATGTGAAAGGGGACAAGGTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTGGAGATGACCGTACTGATGAAGATGCATTTAAGGTTTTATGTGAAAGGGGACAAGGTT 838
Query 839 TTGGGATTATCGTCTCAAAAACTATTAAGGAAACGTACGCCTCTTACTCTCTTCAAGACC 898
|||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct 839 TTGGGATTGTCGTCTCAAAAACTCTTAAGGAAACCTACGCCTCCTACTCTCTTCAAGACC 898
Query 899 CATCTCAGGTTAAAGAATTTCTGGAGCGTTTGGTAAAGTGGAAGAAACAAACACTTGGAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CATCTCAGGTTAAAGAATTTCTGGAGCGTTTGGTAAAGTGGAAGAAACAAACACTTGGAG 958
Query 959 AATAAGAAGAAGAACTGGTTCATAAGAGATATTGA 993
|| ||||||||| || |||||| || | |||||
Sbjct 959 AAGAAGAAGAAG---TGATTCATACGATAGATTGA 990
> Ahg476976 jgi|Araly1|476976|fgenesh2_kg.2__2106__AT1G78090.1
Length=1344
Score = 516 bits (279), Expect = 2e-145
Identities = 623/783 (80%), Gaps = 48/783 (6%)
Strand=Plus/Plus
Query 188 AAGGCAAACAAATTATTATGTTTCTTGATTACGACGGAACTCTCTCGCTAATCACT-GAA 246
|||| ||||| ||| |||||||||||||||||||||||||||| || | || | | |||
Sbjct 402 AAGGGAAACAGATTGTTATGTTTCTTGATTACGACGGAACTCTTTCTCCCAT-AGTTGAA 460
Query 247 GATCACGACAGAGCCTACATAACCGACGAGATGCGAGAAGTTGTAAAGGAAGTGGCTAC- 305
|||| ||||| ||| | ||||||| | ||||||||||| |||||||| || |||||| |
Sbjct 461 GATCCCGACAAAGCTTTCATAACCCATGAGATGCGAGATGTTGTAAAAGACGTGGCTTCG 520
Query 306 ATATTT-CAAGACAGCGATCATCAGCGGACGAAGCACT-GACAAAGTACAG-AGTTTTGT 362
| |||| | ||| || ||| ||| |||| || || | || || || | | ||||||||
Sbjct 521 A-ATTTTCC-GACTGCTATCGTCACCGGAAGATCCA-TAGATAAGGTTC-GTAGTTTTGT 576
Query 363 GAAACTCA-CTG-GTATTCACTACGCTGGGAGCCACGGCATGGACATTAAGGGTCCGACA 420
||| | | | | | ||| ||||||| || |||||||||||||||||||| ||||||||
Sbjct 577 CAAAGTAAAC-GAG-ATTTACTACGCCGGAAGCCACGGCATGGACATTAAAGGTCCGACC 634
Query 421 AATACCGATCAGAGTAAC--C-A-AG-AA-GAA-GTGATG-T-TTC-AACCTGCAAGTGA 470
|| | || | ||| || | | || || ||| | | || | ||| |||||||| ||||
Sbjct 635 AA--C-GAAAATAGTTACGGCCAGAGTAATGAAAGAG-TGCTATTCCAACCTGCACGTGA 690
Query 471 CTATTTACCGATGATTGACGA-GGTGGTTAATG-TTTTGAAGGAAAAGACAAAATCTATC 528
| |||||| ||||| || || ||||||||| | ||||| ||||||||||||||| |||
Sbjct 691 ATTTTTACCAATGATCGA-GAAGGTGGTTAA-GATTTTGGAGGAAAAGACAAAATGGATC 748
Query 529 CCTGGAGCTACGGTCGAGCACAACAAGTTTTGTCTAACAGTACATTTTCGTCGGGTCGAT 588
||||| |||| ||| ||| ||||||||||||||||| | ||||||||||| || || |||
Sbjct 749 CCTGGGGCTATGGTGGAGAACAACAAGTTTTGTCTATCCGTACATTTTCGACGTGTTGAT 808
Query 589 GA-AACGGGATGGGCTGCATTAGCTGA-GCAAGTGAGATTGGTTCTCATTGATTATCC-G 645
|| || | ||||| ||||||||||||| | | || | || ||||| ||||||||||| |
Sbjct 809 GAGAA-GAGATGGACTGCATTAGCTGAAGTA-GTAAAATCAGTTCTTATTGATTATCCAG 866
Query 646 AAATTGAGACTGACACAAGGCAGAAAGGT-CTTAGAACTCCGACCTTCCATCAAATGGGA 704
| | || ||| || || || |||||||| ||| ||| |||| || | |||||||||||
Sbjct 867 AGCT-GAAACTAACCCAGGGTAGAAAGGTGCTT-GAAATCCGCCCCACAATCAAATGGGA 924
Query 705 CAAGGGAAAGGCTCTCGAATTTTTG-CTAAACTCATTAGGGATA-GCAGAAT-CTAAAGA 761
|||||| |||| ||| ||||||| ||||| |||||||| ||| | ||||| | ||||
Sbjct 925 CAAGGGCCAGGCACTC-AATTTTTTACTAAAATCATTAGG-ATATG-AGAATTCGGAAGA 981
Query 762 TGTTTTACCGGTTTACATTGGAGATGACCGTACTGATGAAGATGCATTTAAGGTTTTATG 821
|||| | ||||| ||||| || |||||||||||||| |||||||| |||||||||||| |
Sbjct 982 TGTTGTGCCGGTGTACATCGGGGATGACCGTACTGACGAAGATGCGTTTAAGGTTTTACG 1041
Query 822 TGAAAGGGGACAAGGTTTTGGGATTATCGTCTCAAAAACTATTAAGGAAACGTACGCCTC 881
||||||||||||||||||||||||| | ||||||||| | ||||| || | |||||
Sbjct 1042 TGAAAGGGGACAAGGTTTTGGGATTCTTGTCTCAAAAGTTCCAAAGGACACCAATGCCTC 1101
Query 882 TTACTCTCTTCAAGACCCATCTCAGGTTAAAGAA-TTTCTGGAGCGTTTGGTAAAGTGGA 940
||| ||||| |||||||| ||||||||||| || |||||||||||||| || ||||||
Sbjct 1102 TTATTCTCTACAAGACCCTTCTCAGGTTAAC-AAGTTTCTGGAGCGTTTAGTGGAGTGGA 1160
Query 941 AGA 943
|||
Sbjct 1161 AGA 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5