BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22220.1
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472458 jgi|Araly1|472458|fgenesh2_kg.1__2412__AT1G22220.1 1149 0.0
> Ahg472458 jgi|Araly1|472458|fgenesh2_kg.1__2412__AT1G22220.1
Length=1041
Score = 1149 bits (622), Expect = 0.0
Identities = 859/971 (88%), Gaps = 25/971 (3%)
Strand=Plus/Plus
Query 84 TTTTGTAAGATGGACGTTTTTGATGGACTTCCTGACCCGATCATCGTCGACATCTTGAAC 143
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TTTTGTAAGATGGACGTTTTCGATGGCCTTCCTGACCCGATCATCGTCGACATCTTGAAC 120
Query 144 AAAGTCGGTGACGTCAAAACCTTACTTCGATGCAGC-TCTCTTTCAAAAAGATTTAACTC 202
||||| ||||||||||||||||||||||| |||| | ||||||||||||||||| | |||
Sbjct 121 AAAGTTGGTGACGTCAAAACCTTACTTCGTTGCA-CTTCTCTTTCAAAAAGATTCAGCTC 179
Query 203 GCTTGTCCCTCAGTCTGAGTCACTCACCCTCCGACTCGACCACTCAGTA-TCCGATTCAC 261
||||||||||||||||||||||||| |||||||||||||||| | | | |||||||||
Sbjct 180 CCTTGTCCCTCAGTCTGAGTCACTCATCCTCCGACTCGACCACCCCG-ACTCCGATTCA- 237
Query 262 CCGTCGTCACAAGCATTTTCCGATCTTTATTC-A--------ACGGTCTAGTT-TCTCTT 311
|| ||||| || || |||| ||| |||||| | ||||||| || ||||||
Sbjct 238 CC--AGTCACCAGTATCTTCCAATCCTTATTCAAGTCCTTTCACGGTCT-CTTCTCTCTT 294
Query 312 TTATCCAAACCGGCTAAACCAATCACAATAACCACCCTCTCTCCGAGTCTCCCCTTCAAG 371
|| || |||||||||||||| ||| || | || | |||||||||| |||||||| ||||
Sbjct 295 TTCTCTAAACCGGCTAAACCGATCCCAGTCACGGCTCTCTCTCCGACTCTCCCCTCCAAG 354
Query 372 ATTCTCTCCCGGTTCGACCGGATTCGAAATCTGGACGTAGAGCTTCCCGGCGGCGATGTA 431
|||||||||| ||| ||| ||| || | | ||||||| ||||||| |||||||||||||
Sbjct 355 ATTCTCTCCCCGTTTGACAAGATCCGGAGTTTGGACGTCGAGCTTCACGGCGGCGATGTA 414
Query 432 AAGCTCGAGAAAGGTGCAGCCGTTAAGTGGAAAGCTGAGTTTGGGAAAACACTCAAAAGC 491
||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 415 AAGCTTGAAAAAGGCGCCGCCGTTAAGTGGAAAGCGGAGTTTGGGAAAACTCTCAAGAGC 474
Query 492 TGCGTCATCGTCGCGTTCCGTTCCGCCGGTACCGTGTCTTCTCCCGTCGCCGTAGAAGGT 551
|||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 475 TGCGTCGTTGTCGCCTTCCGTTCCGCCGCTACCGTGTCTTCTCCCGTCGCCGTAGACGGT 534
Query 552 GAGTCAGACGCCGAGTTCGTGACTGGACTGAAGACGCGCGTGGTGTGGACTATAAGCGCG 611
||||||||||||||||| ||||| ||||||||||| || || |||||||| |||||||||
Sbjct 535 GAGTCAGACGCCGAGTTTGTGACCGGACTGAAGACACGTGTCGTGTGGACGATAAGCGCG 594
Query 612 TTGATGGCTGCTTCGTCTCGTCATTACTTGATGAGAGAAGTCGTGAAGGAGCATGAGGAG 671
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 595 TTGATGGCTGCGTCGTCTCGTCATTACTTGATGAGAGAAGTCGTGAAGGAGCACGTGGAG 654
Query 672 ATAGAAAGTTTAG-TTATGCGTGACAAAGAAAGAGAAGGGACGGTGGTGATGAACGAGGA 730
|| || ||||| | | ||||||||| |||| |||| ||||||||||||||| ||| |||
Sbjct 655 ATGGAGAGTTT-GATCATGCGTGACGTAGAAGGAGAGGGGACGGTGGTGATGGACGCGGA 713
Query 731 AGGGCTTAAAGAGTTAAGAAATACGGAGGCGCGTGTGGAAGACGAGGAGCGCGTGGTAAA 790
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 714 AGGGCTTAAAGAGTTTAGGAATACGGAGGCGCGTGTGGAAGACGAGGAGCGCGTGGTGAA 773
Query 791 AAATAAG-AGGAGTGTTGTCCCGAGCGTGAGGATGAGTATGAGACACGCGCCGTCTCTTA 849
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AAAT-AGCAGGAGTGTTGTCCCGAGCGTGAGGATGAGTATGAGACACGCGCCGTCTCTTA 832
Query 850 AACTTAAGAGTGGTATCTGTTTAGAATCTGCTACGCTTGTGATTGTTCGACCGAGCGGAG 909
|||||||||||||||| |||||||||||||| ||||||||||| | || ||||| ||||
Sbjct 833 AACTTAAGAGTGGTATTTGTTTAGAATCTGCCACGCTTGTGATCATCCGTCCGAGTGGAG 892
Query 910 CGGATTTTGAAGT--T-GGAGATGATGCTGAGTTGGCGACGGAGGCTTTCGTCGGAGATT 966
||| || || | ||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 893 AATATTCCGATGTCGTCGGAGATGATGCTGAGCTGGCGACGGAGGCTTTCGCCGGAGATT 952
Query 967 GTATGTACGGTGAAGCGGTCGTCGCTTTGTTAAAGTGCAAGAAGAACGCTTTAGAGATGA 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GTATGTACGGTGAAGCGGTCGTCGCTTTGTTAAAGTGCAAGAAGAACGCTTTAGAGATGA 1012
Query 1027 ATTCGTTTTAA 1037
|||| ||||||
Sbjct 1013 ATTCATTTTAA 1023
Score = 93.5 bits (50), Expect = 3e-18
Identities = 60/64 (94%), Gaps = 3/64 (5%)
Strand=Plus/Plus
Query 7 CAATCATAGCAAGAAAGTGAAACAGAAGAAAACACAGA-GA-AA-CAAAGAGACTCTCTC 63
|||||||||||||||||||||||||||||||||||||| || || |||||| ||||||||
Sbjct 1 CAATCATAGCAAGAAAGTGAAACAGAAGAAAACACAGAAGAGAAACAAAGAAACTCTCTC 60
Query 64 tttt 67
||||
Sbjct 61 TTTT 64
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44832550392
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5