BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22230.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472459 jgi|Araly1|472459|fgenesh2_kg.1__2413__AT1G22230.1 1541 0.0
> Ahg472459 jgi|Araly1|472459|fgenesh2_kg.1__2413__AT1G22230.1
Length=1158
Score = 1541 bits (834), Expect = 0.0
Identities = 1085/1196 (91%), Gaps = 58/1196 (5%)
Strand=Plus/Plus
Query 2 GATGGCAAAGAAAGTATTATTTTCCCGCAAAAGATAAAGCTTGCGAAGCTGTCAAAGCAC 61
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 GATGGCAAAGAAAGTATTATTTTCCAGCAAAAGATAAAGCTTGCGAAGCTGTCAAAGCAC 60
Query 62 AAGAATGCTAAAGGCTTaaaaataaacaaattctcaagaaaaagtggaagaggaaagcaa 121
||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 61 AAGAATGCTAAAGGCTT--AAATAAACAAATTTTCAAGAAAAAGT--------------- 103
Query 122 atttttaaaccaaaagagaaaaagCTAAACCACTCTCTTCAAGATCGATCCTA-TATACA 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 104 ATTTTTAAACCAAAAGATAAAAAGCTAAACCACTCTCTTCAAGATCGATCCTATTATA-T 162
Query 181 ACACAA--aagaagaagaagaagagagaaTCGAATTGGATAACAACTAAAAAAGATGATC 238
||| || | ||||||||||||||||||||| ||||| |||||||||
Sbjct 163 ACA-AATCCA-AAGAAGAAGAAGAGAGAATCGGATTGG-------------AAGATGATC 207
Query 239 AAAGGAGGAGGAGGAAAGTCTTCTGGTTACTCAGCAGATTTGATGGTTTGTTTCCCATCA 298
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 208 AAAGGAGGAGGAGGAAAATCTTCTGGTTACTCAGCAGATTTGATGGTTTGTTTCCCTTCA 267
Query 299 AGAGCACATTTGTCTTTACCTTCTAAATCCATTTCTAGCCCTTCTTC-TTCCTTTAACCG 357
||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 268 AGAACACATTTGTCTTTACCTTCTAAATCCATTTCTAGCCCTTC-TCACTCCTTTAACCG 326
Query 358 CCGTCAAAATGCTCCTCACCACCGTCGTAGCATCAGTAAGCTCTCTAGCAGCGGCGGTGG 417
|||||||||||||||||||||||| || || ||||||||||||||| | ||||| |||||
Sbjct 327 CCGTCAAAATGCTCCTCACCACCGCCGCAGTATCAGTAAGCTCTCTGGAAGCGGTGGTGG 386
Query 418 AGTACGTCAGAATCGCGGTGGCGGAAGGGAGGTAGTTGAAGAACCTACGTCGCCGAAAGT 477
||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 387 AGTTCGTCAGAATCGTGGTGGCGGTAGGGAGGTAGTTGAAGAACCTACGTCGCCAAAAGT 446
Query 478 CACGTGTGCTGGTCAGATCAAAGTGCGGTCAAGTAAACGCGATGGTGGAGGCAAGAATTG 537
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 447 CACTTGTGCTGGTCAGATCAAAGTGCGGTCAAGTAAACGCGATGGTGGAAGCAAGAATTG 506
Query 538 GCAGTCTTTGATGGCGGAGATAGAGAAGATACATAGAAGCAAGTCGGAGAGTAAGTTCTT 597
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 507 GCAGTCTTTAATAGCGGAGATCGAGAAGATACATAGAAGCAAGTCGGAGAGTAAGTTCTT 566
Query 598 TGGGATTAAGAGAGATGTCATGGGATTTTTGACTTGCCTCCGCGACTTCGATTTTCGATG 657
|||||||||||||||||| ||| | || ||||||||||||||||| ||||||||||||||
Sbjct 567 TGGGATTAAGAGAGATGTTATGAGCTTCTTGACTTGCCTCCGCGATTTCGATTTTCGATG 626
Query 658 TTTTGGTGCGTTTCCTCCGGTTGATATAATCTCtgatgatgaagaagaagacgaggaaga 717
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 627 TTTCGGTGCGTTTCCTCCGGTGGATATAATCTCTGATGATGAAGAAGAAGAAGAGGAAGA 686
Query 718 ggaagaggaggatgaagaagaagatgaagatgaaagTTCAGGGACAGTTTTCTCTAAATG 777
||||||||| | ||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 687 GGAAGAGGA--A-GAAGAAGAAGATGAAGATGAAAGCTCGGGGACAGTTTTCTCGAAATG 743
Query 778 GCTTATGGTTTTACACGAAAAGCAAAACAATGAAGAGTGTGTCGACGGAAAGGAAAACGT 837
|||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||||
Sbjct 744 GCTTATGGTTTTACACGAAAAGCAAAACAATGGAGAGTGCGTCAACGAAAAGGAAAACGC 803
Query 838 TTTTTCGGATGTAGAAACTGCGGTCCCGCCGCCGAACGCGTTGTTGCTGATGCGGTGTAG 897
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||
Sbjct 804 TTTTTCGGATGTAGAAACTGCGGTTCCGCCGCCAAACGCGTTGTTGTTGATGCGGTGCAG 863
Query 898 ATCTGCACCGGTTAAGAATTGGTcagaggagaagaaagaagaaacagaggaaggtgataa 957
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 864 ATCTGCCCCGGTTAAGAATTGGTTAGAGGAGAAGAAAGAAGAAACAGAGGAAGGTGAAAA 923
Query 958 cagagtaaaacagagcggagaagaagaagaagaaga-gaag--GAC-A-GAGT-GG-GA- 1009
|||||||||||||||||||||||||||||||||||| |||| || | ||| || ||
Sbjct 924 CAGAGTAAAACAGAGCGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGGAGAG 983
Query 1010 A---A----TAAGAAGGATCTGAGATCATTAATGGAGGAAGAGAAGAAGATGAATTTGGT 1062
| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 984 AGTGAGAAATAAGAAGGATCTGAGATCATTAATGGAGGAAGAGAAGAAGGTGAATTTGGT 1043
Query 1063 AGTGATGAATTACGACACAAACTATTACAAACTCTCTA-ATGATATCGCAAAGGAAACTT 1121
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 1044 AGTGATGAATTACGACACAAACTATTACAAACTCTCTACA-GATATCGCTAAGGAAACTT 1102
Query 1122 GGGTTGTCGGTGGTATTCAAGATCCTCTGTTTCGTAGTCGAAGCTGGAAGAAGTGA 1177
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GGGTTGTCGGTGGAATTCAAGATCCTCTGTTTCGTAGTCGAAGCTGGAAGAAGTGA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5