BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22240.1
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335467 jgi|Araly1|335467|fgenesh1_pg.C_scaffold_1002032 2217 0.0
> Ahg335467 jgi|Araly1|335467|fgenesh1_pg.C_scaffold_1002032
Length=1578
Score = 2217 bits (1200), Expect = 0.0
Identities = 1462/1583 (92%), Gaps = 40/1583 (3%)
Strand=Plus/Plus
Query 1 ATGATGAGAGGTGAATTTGGAGAA-----G----CTTCGTCTCTTTCACGTTCTCCTTCT 51
|||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1 ATGATGAGAGGTGAATTTGGAGAAGCTTCGTCTCCTTCGTCTCTTTCACGTTCTCCTTCT 60
Query 52 TCTCCTCTTCAAACAGAACCACATCCCCAATCTCCCAAGTTTTATCGTAATCATTATGTC 111
||||||||||||||| || |||||| || ||||| ||||| ||||||||||||||||||
Sbjct 61 TCTCCTCTTCAAACACAATCACATCATCACTCTCCTAAGTTCTATCGTAATCATTATGTC 120
Query 112 TTTTCCGGTGATCACTCATCTTACAACAGTTCGAGTAGGTTCTGTCTCCGATCTCCGTCT 171
|||| || | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 --TTCC-CTGGTGACTCATCTTACAACAGTTCGACTAGGTTCTGTCTCCGATCTCCGTCT 177
Query 172 GATTACTCGCTTTCGAGTTATTTCTCAAACGGGTTGTGTTCTTCTGAGGATGGTTCGTCT 231
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 178 GATTACTCACTTTCGAGTTACTTCTCAAATGGGTTGTGTTCTTCTGAGGATGGTTCGTCT 237
Query 232 CAGTTCGCTTCTCCTCCACTCGATGGCTTGATGACCAAGTATAATTTTGGTGGTGATGAT 291
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 CAGTTCGCTTCTCCTCCACTCGATGGCTTGATGACCAAGTATAATCTTGGTGGTGATGAT 297
Query 292 TTAGGTCTATGCGAAAGTTTCGATCTTCTGAATGTTG--G-AGAAGAAGACAAGACTCAT 348
|||||||| |||||||||||| ||||| ||||||||| | ||||||| |||||||||||
Sbjct 298 TTAGGTCTTTGCGAAAGTTTCCATCTTTTGAATGTTGCAGAAGAAGAATACAAGACTCAT 357
Query 349 CACCAAACTCAGAGGAGCAGTTTTGGTAACTATGAAGCTAATGGAGATGGTGGATTCCGA 408
||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||| |||
Sbjct 358 CACCAAACTCAAAGGAGCAACTTTGGTAACTATGACGCTAATGGTGATGGTGGATTGCGA 417
Query 409 TATTACTCTGGTTTTGGAGTTGATCAAAAGGATC--A-TCAAAT-TT--C---T---A-- 454
| ||||||||||||||| |||||||||||||||| | | | | || | | |
Sbjct 418 TTTTACTCTGGTTTTGGTGTTGATCAAAAGGATCAAACTTTACTCTTCCCAAATCAAAGG 477
Query 455 -AT--TC---TT-GGAATCTGGGAATGCAGAGTTGTAACATGAACAATTACTCTGTTCCG 507
|| || || ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 478 GATCATCAGATTCCTAATCTGGGATTGCAGAGTTGTTACATGAACAATTACTCTGTTCCG 537
Query 508 GTACATGGAAAAAGCGGTGTT-GGAGCATTGTTTGATCATCAAGGAATTAGCAGTAACCC 566
|| || |||||||||||||| ||| ||||||||||| ||||||||| |||||||||| |
Sbjct 538 GTTTATCGAAAAAGCGGTGTTGGGA-CATTGTTTGATGATCAAGGAAGTAGCAGTAACAC 596
Query 567 TAATGAGAGTCTGCCTAAAGTATCTGAATTCCAGGGATATGTTTATTTTATGGCTAAAGA 626
||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 597 GAATCAGAGTCTGCCTAAAGTATCTGAATTCCAGGGATATGTTTACTTAATGGCTAAAGA 656
Query 627 TCAACATGGTTGCAGATTCTTACAGTGGATCTTTGAAGATGGAAGTGCTTTAGATGCTCT 686
|||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
Sbjct 657 TCAACATGGTTGCAGATTTTTACAGAGGATCTTCGAAGATGGAAGTGCTTTAGATGCTAT 716
Query 687 GGTTATTTTCAGTGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGTAA 746
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 GGTTATTTTCAATGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGGAA 776
Query 747 TTACTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACAAAGGACACAGATCATACT 806
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 777 TTACTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACAACGAACACAGATCATACT 836
Query 807 CATGGTCACTTCAGAACCTGGTCAGCTTATTCGAATATCTCTCAACGCTTATGGTACTCG 866
|||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||
Sbjct 837 TATGGTCACTTCAGAACCTGGACAGCTTATTCGGATTTCGCTCAACGCTTACGGTACTCG 896
Query 867 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAAGGAAGCAGATTTCTCTGGTGAAATC 926
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 897 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAAGGAAGCAGATTTCTTTGGTGAAATT 956
Query 927 AGCT-TTGAGGCCTGGATTTCTTAATCTCATTAGGGATTTGAATGGGAATCATGTGATTC 985
|||| || || ||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 957 AGCTCTT-AGACCTGGATTTCTCAATCTCATTAGGGATCTAAATGGGAATCATGTGATTC 1015
Query 986 AACGTTGCTTGCAGTGCCTTAGTACAGAAGATAACGAGTTCATCTTTGAAGATGCTACAA 1045
||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1016 AACGTTGCTTGAAGTGCCTTAGCACAAAAGATAACGAGTTCATCTTTGAAGATGCTACAA 1075
Query 1046 AGTTCTGTATCGATATCGCTACACATAGACATGGATGTTGTGTGTTACAAAAGTGCATTG 1105
|||||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||
Sbjct 1076 AGTTCTGTATCGATATTGCGACACATCGACATGGATGTTGTGTGTTACAAAAATGCATTG 1135
Query 1106 CTTATTCCAGTGGACTACAAAGAGAGAAGCTTGTAACCGAAATCTCAAGAAACAGTCTCT 1165
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1136 CTTATTCCAGTGGACTACAAAGAGAGAAGCTTGTAACTGAAATCTCAAGAAACAGTCTCT 1195
Query 1166 TCCTAGCTCAAGATCCTTATGGGAACTATGCTGTCCAATTTGTTCTTGAACTGAGGGATT 1225
|||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1196 TCCTTGCTCAAGATCCTTATGGGAACTATGCGGTCCAATTCGTTCTAGAACTGAGGGATT 1255
Query 1226 TTTCTGCGATAGCCGCGATGCTTGCGCAGTTGAAAGGTCATTATGTAGAGCTTTCAATGC 1285
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1256 TTTCTGCGATAGCCGCGATGCTTGCGCAGTTAAAAGGTCATTATGTAGAGCTTTCAATGC 1315
Query 1286 AGAAATTTAGTAGTCATATGGTGGAAAGATGCTTAACACATTGTCCAGAGAGCCGTCCTC 1345
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AGAAATTCAGTAGTCATATGGTGGAAAGATGCTTAACACATTGTCCAGAGAGCCGTCCTC 1375
Query 1346 AGATCGTGCGCGAACTCATCTCTGTTCCTCATTTTGATATTCTAATTCAAGACCCTTATG 1405
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AGATCGTGCGTGAACTCATCTCTGTTCCTCATTTTGATATTCTAATTCAAGACCCTTATG 1435
Query 1406 CTAACTTTGTCATCCAAGCTGCTCTTGCTGTTACCAAGGGTTCACTTCATGCCACACTCG 1465
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1436 CTAACTTTGTCATCCAAGCTGCTCTTGCTGTCACCAAGGGTTCACTTCATGCCACACTCG 1495
Query 1466 TTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGCAAAAGGATTTTCT 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGCAAAAGGATTTTCT 1555
Query 1526 CACGAAATCTCTTGAAGAATTGA 1548
|| ||||||||||||||||||||
Sbjct 1556 CAAGAAATCTCTTGAAGAATTGA 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57973352890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5