BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22240.1 Length=1548 Score E Sequences producing significant alignments: (Bits) Value Ahg335467 jgi|Araly1|335467|fgenesh1_pg.C_scaffold_1002032 2217 0.0 > Ahg335467 jgi|Araly1|335467|fgenesh1_pg.C_scaffold_1002032 Length=1578 Score = 2217 bits (1200), Expect = 0.0 Identities = 1462/1583 (92%), Gaps = 40/1583 (3%) Strand=Plus/Plus Query 1 ATGATGAGAGGTGAATTTGGAGAA-----G----CTTCGTCTCTTTCACGTTCTCCTTCT 51 |||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1 ATGATGAGAGGTGAATTTGGAGAAGCTTCGTCTCCTTCGTCTCTTTCACGTTCTCCTTCT 60 Query 52 TCTCCTCTTCAAACAGAACCACATCCCCAATCTCCCAAGTTTTATCGTAATCATTATGTC 111 ||||||||||||||| || |||||| || ||||| ||||| |||||||||||||||||| Sbjct 61 TCTCCTCTTCAAACACAATCACATCATCACTCTCCTAAGTTCTATCGTAATCATTATGTC 120 Query 112 TTTTCCGGTGATCACTCATCTTACAACAGTTCGAGTAGGTTCTGTCTCCGATCTCCGTCT 171 |||| || | ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 121 --TTCC-CTGGTGACTCATCTTACAACAGTTCGACTAGGTTCTGTCTCCGATCTCCGTCT 177 Query 172 GATTACTCGCTTTCGAGTTATTTCTCAAACGGGTTGTGTTCTTCTGAGGATGGTTCGTCT 231 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 178 GATTACTCACTTTCGAGTTACTTCTCAAATGGGTTGTGTTCTTCTGAGGATGGTTCGTCT 237 Query 232 CAGTTCGCTTCTCCTCCACTCGATGGCTTGATGACCAAGTATAATTTTGGTGGTGATGAT 291 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 238 CAGTTCGCTTCTCCTCCACTCGATGGCTTGATGACCAAGTATAATCTTGGTGGTGATGAT 297 Query 292 TTAGGTCTATGCGAAAGTTTCGATCTTCTGAATGTTG--G-AGAAGAAGACAAGACTCAT 348 |||||||| |||||||||||| ||||| ||||||||| | ||||||| ||||||||||| Sbjct 298 TTAGGTCTTTGCGAAAGTTTCCATCTTTTGAATGTTGCAGAAGAAGAATACAAGACTCAT 357 Query 349 CACCAAACTCAGAGGAGCAGTTTTGGTAACTATGAAGCTAATGGAGATGGTGGATTCCGA 408 ||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||| ||| Sbjct 358 CACCAAACTCAAAGGAGCAACTTTGGTAACTATGACGCTAATGGTGATGGTGGATTGCGA 417 Query 409 TATTACTCTGGTTTTGGAGTTGATCAAAAGGATC--A-TCAAAT-TT--C---T---A-- 454 | ||||||||||||||| |||||||||||||||| | | | | || | | | Sbjct 418 TTTTACTCTGGTTTTGGTGTTGATCAAAAGGATCAAACTTTACTCTTCCCAAATCAAAGG 477 Query 455 -AT--TC---TT-GGAATCTGGGAATGCAGAGTTGTAACATGAACAATTACTCTGTTCCG 507 || || || ||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 478 GATCATCAGATTCCTAATCTGGGATTGCAGAGTTGTTACATGAACAATTACTCTGTTCCG 537 Query 508 GTACATGGAAAAAGCGGTGTT-GGAGCATTGTTTGATCATCAAGGAATTAGCAGTAACCC 566 || || |||||||||||||| ||| ||||||||||| ||||||||| |||||||||| | Sbjct 538 GTTTATCGAAAAAGCGGTGTTGGGA-CATTGTTTGATGATCAAGGAAGTAGCAGTAACAC 596 Query 567 TAATGAGAGTCTGCCTAAAGTATCTGAATTCCAGGGATATGTTTATTTTATGGCTAAAGA 626 ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 597 GAATCAGAGTCTGCCTAAAGTATCTGAATTCCAGGGATATGTTTACTTAATGGCTAAAGA 656 Query 627 TCAACATGGTTGCAGATTCTTACAGTGGATCTTTGAAGATGGAAGTGCTTTAGATGCTCT 686 |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| | Sbjct 657 TCAACATGGTTGCAGATTTTTACAGAGGATCTTCGAAGATGGAAGTGCTTTAGATGCTAT 716 Query 687 GGTTATTTTCAGTGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGTAA 746 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 717 GGTTATTTTCAATGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGGAA 776 Query 747 TTACTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACAAAGGACACAGATCATACT 806 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 777 TTACTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACAACGAACACAGATCATACT 836 Query 807 CATGGTCACTTCAGAACCTGGTCAGCTTATTCGAATATCTCTCAACGCTTATGGTACTCG 866 |||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| Sbjct 837 TATGGTCACTTCAGAACCTGGACAGCTTATTCGGATTTCGCTCAACGCTTACGGTACTCG 896 Query 867 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAAGGAAGCAGATTTCTCTGGTGAAATC 926 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 897 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAAGGAAGCAGATTTCTTTGGTGAAATT 956 Query 927 AGCT-TTGAGGCCTGGATTTCTTAATCTCATTAGGGATTTGAATGGGAATCATGTGATTC 985 |||| || || ||||||||||| ||||||||||||||| | ||||||||||||||||||| Sbjct 957 AGCTCTT-AGACCTGGATTTCTCAATCTCATTAGGGATCTAAATGGGAATCATGTGATTC 1015 Query 986 AACGTTGCTTGCAGTGCCTTAGTACAGAAGATAACGAGTTCATCTTTGAAGATGCTACAA 1045 ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1016 AACGTTGCTTGAAGTGCCTTAGCACAAAAGATAACGAGTTCATCTTTGAAGATGCTACAA 1075 Query 1046 AGTTCTGTATCGATATCGCTACACATAGACATGGATGTTGTGTGTTACAAAAGTGCATTG 1105 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 1076 AGTTCTGTATCGATATTGCGACACATCGACATGGATGTTGTGTGTTACAAAAATGCATTG 1135 Query 1106 CTTATTCCAGTGGACTACAAAGAGAGAAGCTTGTAACCGAAATCTCAAGAAACAGTCTCT 1165 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1136 CTTATTCCAGTGGACTACAAAGAGAGAAGCTTGTAACTGAAATCTCAAGAAACAGTCTCT 1195 Query 1166 TCCTAGCTCAAGATCCTTATGGGAACTATGCTGTCCAATTTGTTCTTGAACTGAGGGATT 1225 |||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 1196 TCCTTGCTCAAGATCCTTATGGGAACTATGCGGTCCAATTCGTTCTAGAACTGAGGGATT 1255 Query 1226 TTTCTGCGATAGCCGCGATGCTTGCGCAGTTGAAAGGTCATTATGTAGAGCTTTCAATGC 1285 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1256 TTTCTGCGATAGCCGCGATGCTTGCGCAGTTAAAAGGTCATTATGTAGAGCTTTCAATGC 1315 Query 1286 AGAAATTTAGTAGTCATATGGTGGAAAGATGCTTAACACATTGTCCAGAGAGCCGTCCTC 1345 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 AGAAATTCAGTAGTCATATGGTGGAAAGATGCTTAACACATTGTCCAGAGAGCCGTCCTC 1375 Query 1346 AGATCGTGCGCGAACTCATCTCTGTTCCTCATTTTGATATTCTAATTCAAGACCCTTATG 1405 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 AGATCGTGCGTGAACTCATCTCTGTTCCTCATTTTGATATTCTAATTCAAGACCCTTATG 1435 Query 1406 CTAACTTTGTCATCCAAGCTGCTCTTGCTGTTACCAAGGGTTCACTTCATGCCACACTCG 1465 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1436 CTAACTTTGTCATCCAAGCTGCTCTTGCTGTCACCAAGGGTTCACTTCATGCCACACTCG 1495 Query 1466 TTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGCAAAAGGATTTTCT 1525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1496 TTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGCAAAAGGATTTTCT 1555 Query 1526 CACGAAATCTCTTGAAGAATTGA 1548 || |||||||||||||||||||| Sbjct 1556 CAAGAAATCTCTTGAAGAATTGA 1578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57973352890 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5