BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22250.1
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335470 jgi|Araly1|335470|fgenesh1_pg.C_scaffold_1002035 898 0.0
> Ahg335470 jgi|Araly1|335470|fgenesh1_pg.C_scaffold_1002035
Length=609
Score = 898 bits (486), Expect = 0.0
Identities = 570/610 (93%), Gaps = 8/610 (1%)
Strand=Plus/Plus
Query 98 ATGTTTTCTCCACATGATGGAACACTCTGTTCTAAAAAGAGGGATCATATGAAAGTTTTT 157
|||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTTCTCTACGTGATGGAACCCTCTGTTCTAAAAAGAGGGATCATATGAAAGTTTTT 60
Query 158 GGAGAATCGTTTCATGGTTCTTTCAAAAGGAGCAAACAAGGAGATCAAAAACAAACCAAA 217
||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||
Sbjct 61 GGAGAATCGTTTCATGGTTCTTTTAAACGGAGCAAACAAGAAGATCAAACACAAACCAAA 120
Query 218 TTTGAGAAGAACACTACTACTCT-GTTCTTTCAAAGATCAAAGTCAGATAGCGCCATGTT 276
||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct 121 CTTGAGAAGAACTCTACTACTCTGGTT-TTTCAAAGATCAAAGTCAGAGAGCGCCATGTT 179
Query 277 GATAAAGCCTGATGTTCAGCTTCACCTAGAGGCTAAGACCCAATCAGAGACATTTGAAGA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATAAAGCCTGATGTTCAGCTTCACCTAGAGGCTAAGACCCAATCAGAGACATTTGAAGA 239
Query 337 TCATAGGACAGACCTGGACCTTAATTTGAACCTTTATTCGTCATCAAGTTCCTCTGTCaa 396
|||||||||||||||||||||||||||||| |||| |||||||||||||| | | | ||
Sbjct 240 TCATAGGACAGACCTGGACCTTAATTTGAATCTTTCTTCGTCATCAAGTTTCAATATGAA 299
Query 397 aaaaaCAATCATGGAGAAAGATGAATGTTCCAAAGGCGGAACTGTGATCAT--C-AGCCC 453
|||||||||||||||||||||||||||||| ||||| | | || ||||||| | | |||
Sbjct 300 AAAAACAATCATGGAGAAAGATGAATGTTCGAAAGGAGTATCTTTGATCATGACTACCCC 359
Query 454 AAGTAAGAAGGTGAGATCAGGTGATATAGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGTAAGAAGGTGAGATCAGGTGATATAGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTT 419
Query 514 TGAAGGTGATGATGATGAT-A-A-TCAGAAGAAGCAAGAGATGATAACAACAGTGTGCAT 570
||||||||||||||||||| | | ||||||||||||||||||| |||||||||| |||||
Sbjct 420 TGAAGGTGATGATGATGATGATAGTCAGAAGAAGCAAGAGATGGTAACAACAGTTTGCAT 479
Query 571 GAAGTGTCACATGCTGGTTATGCTCTGCAAATCTACTCTTGTCTGTCCTAACTGCAAATT 630
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 480 GAAGTGTCACATGCTGGTTATGCTCTGTAAATCAACTCTTGTATGTCCTAACTGCAAATT 539
Query 631 CATGCACCATGATGATCATAGCTCCACTAAACAGTTTCAGACTTTAAATTTGTTTAAGCT 690
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 540 CATGCACCAAGATGATCATAGCTCCACAAAACAGTTTAAGACTTTAAATTTGTTTAAGCT 599
Query 691 CTTATGCTAG 700
||| ||||||
Sbjct 600 CTTGTGCTAG 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30231473181
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5