BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22260.1
Length=2953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921244 jgi|Araly1|921244|scaffold_102525.1 2933 0.0
Ahg335550 jgi|Araly1|335550|fgenesh1_pg.C_scaffold_1002115 579 5e-164
> Ahg921244 jgi|Araly1|921244|scaffold_102525.1
Length=2657
Score = 2933 bits (1588), Expect = 0.0
Identities = 1862/1994 (93%), Gaps = 20/1994 (1%)
Strand=Plus/Plus
Query 95 CTCCGATCTAGAGATGCAGAAGTTAGGGTTTCCGGCGATGAAGAGTTTGGATAAACCT-C 153
||||||||| ||||||||||| ||||||||||||||||||||||| |||||| || || |
Sbjct 8 CTCCGATCTCGAGATGCAGAAATTAGGGTTTCCGGCGATGAAGAGCTTGGATCAA-CTCC 66
Query 154 GATCGTTGTCTGGATCGGCGAATATGTACTCCTTCTCCAATCGTAAGCCTCCGGATTCCG 213
||||||| |||||||||||||| | |||||||||||||| |||| ||||| ||||||||
Sbjct 67 GATCGTTTTCTGGATCGGCGAAGACGTACTCCTTCTCCACTCGTCCGCCTCAGGATTCCG 126
Query 214 TTTCCTCCGGAAGTTTCTCGAATTTGAAACTCACTGCAGAGAAACTGGTGAAGGATCAGG 273
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCTCCTCCGGAAGTTTCTCGAATTTGAAACTCACTGCAGAGAAACTGGTGAAGGATCAGG 186
Query 274 CTGCGATGAGAACAGATCTCGAATTGGCGAATTGTAAGCTGAAAAAGTCAATGGAACATG 333
| || |||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||
Sbjct 187 CCGCTATGAGAACAGATCTAGAACTGGCGAATTGTAAGCTGAAAAAGTCACTGGAGCATG 246
Query 334 TCTATGCCTTAGAGGAGAAACTGCAGAACGCTTTTAATGAGAATGCTAAGCTCAGAGTTA 393
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 247 TCTATGCCTTAGAGGATAAACTTCAAAACGCTTTTAATGAGAATGCTAAGCTCAGAGTTA 306
Query 394 GGAAAAAGGAAGATGAGAAGCTTTGGAGAGGATTGGAGTCTAAGTTCTCTTCAACAAAGA 453
|| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 307 GGCAAAAGGAAGATGAGAAGCTTTGGAGAGGATTGGAATCTAAGTTCTCTTCGACAAAGA 366
Query 454 CTCTGTGTGATCAACTTACAGAGACTCTGCAGCATTTGGCTTCCCAAGTTCAGGATGCTG 513
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 367 CTCTGTGTGATCAACTTACTGAGACTCTGCAGCATTTAGCTTCTCAAGTTCAGGATGCTG 426
Query 514 AGAAGGATAAAGGtttttttGAGACCAAATTCAGTACTAGTTCAGAAGCAATAGACTCTT 573
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 AGAAGGATAAAGTTTTTTTTGAGACCAAATTCAGTACTAGTTCAGAAGCAATAGACTCTT 486
Query 574 TAAACCAGCAAATGCGAGACATGTCTTTAAGATTAGATGCTGCTAAAGAAGAAATCACAA 633
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 487 TAAACCAGCAAATGCGAGACATGTCTTTAAGATTAGTTACTGCTAAAGAAGAAATCACAA 546
Query 634 GCAGAGATAAGGAATTGGAGGAGCTCAAACTCGAGAAACAACAGAAGGAAATGTTCTATC 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GCAGAGATAAGGAATTGGAGGAGCTCAAACTCGAGAAACAACAGAAGGAAATGTTCTATC 606
Query 694 AAACTGAACGGTGTGGAACTGCCAGTCTCATTGAGAAGAAAGATGCTGTGATAACAAAAT 753
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 607 AAACTGAACGGTGCGGAACTGCCAGTCTCATTGAGAAGAAAGATGCTGTGATAACAAAGT 666
Query 754 TGGAAGCATCTGCAGCTGAAAGAAAACTCAACATTGAAAACTTGAATTCCCAACTAGAGA 813
| ||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || |
Sbjct 667 TAGAAACAACTGCAGCCGAAAGAAAACTCAACATTGAAAACTTGAACTCCCAACTGGAAA 726
Query 814 AGGTTCATCTTGAGTTAACAACAAAAGAAGACGAGGTCAAAGATCTTGTTAGTATCCAGG 873
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 727 AGCTACATCTTGAGTTAACAACAAAAGAAGACGAGGTCAAAGACCTTGTTAGTATCCAGG 786
Query 874 AGAAGTTGGAGAAAGAAAAGACGAGTGTTCAGCTGAGTGCAGAT-AATTGTTTTGAAAAA 932
|||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||
Sbjct 787 AGAAGTTGGAGAAAGAAAAGACGAGTGTTCAGTTGAGTGCAGATGAACTGTTT-GAAAAG 845
Query 933 CTAGTCAGCTCAGAGCAGGAGGTTAAGAAGCTAGATGAATTAGTCCAATACTTGGTAGCT 992
|| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 846 CTTGTCAGCTCAGAGCAGGAGGTTAAGAAGCTCGATGAATTTGTCCACTACTTGGTAGCT 905
Query 993 GAGCTGACTGAATTGGACAAAAAGAATCTGACCTTCAAGGAAAAGTTTGATAAACTAAGT 1052
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 906 GAGTTGACTGAATTGGACAAAAAGAATCTGACCCTCAAGGGAAAGTTTGATAAACTAAGT 965
Query 1053 GGCCTATATGATACTCACATAATGTTG-CTGCAAAAAGACAGAGATCTTGCATTGGATCG 1111
|||||||||||||| ||| | |||||| | || |||||||||||||||||||| |||||
Sbjct 966 GGCCTATATGATACCCACTTTATGTTGTC-GCGAAAAGACAGAGATCTTGCATCAGATCG 1024
Query 1112 TGCTCAAAGATCATTTGAT-AATCTCCAGGGCGAGTTATT-TAG-AGTAGCTGCCACAAA 1168
|||||||||||| |||||| || |||||||||||||| || ||| | || ||||| ||||
Sbjct 1025 TGCTCAAAGATCGTTTGATCAA-CTCCAGGGCGAGTT-TTCTAGCA-TAACTGCC-CAAA 1080
Query 1169 A-GAAGCTCTGGAATCTGC-AGGCAATGAACTAAATGAAAAAATAGTTGAGCTCCAGAAT 1226
| |||||||||||||| | || ||| ||||||| |||||||||||||| ||||||||||
Sbjct 1081 AAGAAGCTCTGGAATCAACGAG-CAACGAACTAAGTGAAAAAATAGTTGTGCTCCAGAAT 1139
Query 1227 GATAAAGAGTCTTTAATATCTCAACTTTCTGGGCTACGCTGCTCTACAAGCCAGACCATT 1286
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1140 GATAAAGAGTCTTTAATATCTCAACTTTCTGGGGTACGCTGCTCTGCAAGCCAGACCATT 1199
Query 1287 GATAAACTGGAGTCTGAAGCAAAAGGACTAGTTTCGAAACA-TGCTGATGCAGAATCAGC 1345
|||||| |||||||||||||||||| ||| |||| ||| | |||||| |||||||||
Sbjct 1200 GATAAATTGGAGTCTGAAGCAAAAGAACTGGTTTT-AAAGAATGCTGAAACAGAATCAGT 1258
Query 1346 GATTTCGCAGCTGAAAGAAGAAATGGAAACTTTATTGGAAAGTGTGAAG-ACATCAGAGG 1404
||||||| |||||||||| ||||| |||||||||||||||||||| ||| ||||||| ||
Sbjct 1259 GATTTCGAAGCTGAAAGAGGAAATAGAAACTTTATTGGAAAGTGT-AAGGACATCAGCGG 1317
Query 1405 ATAAGAAGCAAGAATTGTCATTAAAGCTTTCATCATTAGAGATGGAAAGCAAAGAGAAGT 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ATAAGAAGCAAGAATTGTCATTAAAGCTTTCATCATTAGAGATGGAAAGCAAAGAGAAGT 1377
Query 1465 GCGAGAAACTGCAGGCAGATGCACAGAGACAAGTTGAGGAACTAGAGACTTTGCAGAAAG 1524
||||| |||||||||||||||||| ||||| |||| |||||||||||||||||| ||||
Sbjct 1378 ACGAGACACTGCAGGCAGATGCACATAGACATGTTGGGGAACTAGAGACTTTGCAAAAAG 1437
Query 1525 AGAGTGAGAGCCATCAGCTGCAGGCGGATTTATTGGCGAAAGAGGTGAACCAGCTCCAAA 1584
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1438 AGAGTGAGAGCCATCAGCTGCAGGCGGATTTGTTGGCAAAAGAGGTGAACCAGCTCCAAA 1497
Query 1585 CCGTCATAGAGGAGAAAGGGCATGTTATCCTCCAGTGCAATGAAAACGAGAAGCAGTTAA 1644
||||||||||||||||||| || ||||||| ||||||||||||||||||||| | ||||
Sbjct 1498 CCGTCATAGAGGAGAAAGGAAATCTTATCCTGCAGTGCAATGAAAACGAGAAGAATTTAA 1557
Query 1645 ACCAGCAAATCATTAAGGACAAGGAGCTACTGGCAACTGCTGAAACTAAGCTTGCAGAAG 1704
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ACCAACAAATCATTAAGGACAAGGAGCTACTGGCAACTGCTGAAACTAAGCTTGCAGAAG 1617
Query 1705 CAAAGAAGCAATATGACCTGATGCTAGAAAGTAAACAGTTGGAATTGTCAAGGCACTTAA 1764
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1618 CAAAGAAGCAATATGACCTGATGCTAGAAAATAAACAGTTGGAATTGTCAAGGCACTTAA 1677
Query 1765 AAGAATTATCACAGAGGAACGACCAGGCAATTAATGAGATCAGGAGGAAGTATGATGTAG 1824
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1678 AAGAATTATCACAGAGGAATGACCAGGCAATTAATGATATCAGGAGGAAGTATGATGTAG 1737
Query 1825 AGAAGCATGAGATTATTAATTCTGAAAAAGACAAGGTTGAAAAAATTATCAAAGATTTGT 1884
||||||| |||||||||||||||||||| ||||||||||||| ||||||||| || |||
Sbjct 1738 AGAAGCAGGAGATTATTAATTCTGAAAAGGACAAGGTTGAAAGAATTATCAAGGAGCTGT 1797
Query 1885 CCAATAAATTTGATAAAGAACTCTCAGATTGCAAAGAAGAATCAAAGAGGCAACTGCTGA 1944
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CCACTAAATATGATAAAGAACTCTCAGATTGCAAAGAAGAATCAAAGAGGCAACTGCTGA 1857
Query 1945 CCATTCAAGAGGAACATTCTTCTCTGATTCTCAGTCTTCGGGAGGAGCATGAGAGTAAGG 2004
| | ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1858 CTAGTCAAGAGGAACATTCTTCTCTGATTCTTAGTATTCGGGAGGAGCATGAGAGTAAGG 1917
Query 2005 AGCTCAATCTCAAAGCCAAGTATGACCAGGAACTGAGACAAAGTCAGATTCAGGCTGAAA 2064
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1918 AGCTCAATCTCAAAGCCAAGTATGACCAGGAACTGAGACAAAATCAGATTCAGGCTGAAA 1977
Query 2065 ACGAACTGAAAGAG 2078
| ||||| ||||||
Sbjct 1978 ATGAACTAAAAGAG 1991
Score = 466 bits (252), Expect = 4e-130
Identities = 344/386 (89%), Gaps = 15/386 (4%)
Strand=Plus/Plus
Query 2362 AGGACTCTCCTTTTGTAAAGGCAAAAGAAACACCTGTGTCAAAAATATTGAAGAAAGCTC 2421
|||||||||||||||||||| |||||| |||| |||||||||| |||||||||||||||
Sbjct 2272 AGGACTCTCCTTTTGTAAAGACAAAAGTAACATCTGTGTCAAATATATTGAAGAAAGCT- 2330
Query 2422 A-AAATGTAAACGCAGGAAGCGTACTGAGCATTCCAAATCCAAAGCATCATAGCAAGGTG 2480
| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2331 AGAAATGTAAACACAGGAAGCGTAATGAGCATTCCAAATCCAAAGCATCATAGCAAGG-A 2389
Query 2481 A-CACATCGTGAGTATGAAGTTGAAACGAATAATGGGAGGGTAACC-AAACGAAGAAAAA 2538
| | |||||||||||||| ||||||||||||||||||||| | ||| ||||| |||||||
Sbjct 2390 ACCTCATCGTGAGTATGACGTTGAAACGAATAATGGGAGGAT-ACCTAAACGGAGAAAAA 2448
Query 2539 CAAGAAATACAACCATGTTTGAGGAGCCACAAAGACGCAGGACTAGGGCT-ACACCTAAA 2597
|||||||||| || |||||| |||||| |||||||||||| |||| || | ||||| |||
Sbjct 2449 CAAGAAATACGACAATGTTTCAGGAGCTACAAAGACGCAGTACTA-GGTTGACACCCAAA 2507
Query 2598 -T--TGACCCCCCAAAGTATCGCCAAGGGCACAG-GAAT-GACGAGTCATGCTCGCTCTG 2652
| |||| ||| |||| |||||||||| |||| | || | || ||||| |||||||||
Sbjct 2508 TTGATGACACCCAAAAGCATCGCCAAGGAAACAGCG-ATGGCCG-GTCATCCTCGCTCTG 2565
Query 2653 CAAATATTGGAGACTTGTTTTCAGAAGGTTCTCTCAACCCATATGCTGATGATCCCTATG 2712
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2566 CAAATATTGGAGACTTGTTTTCAGAAGGTTCCCTCAACCCATATGCTGATGATCCCTATG 2625
Query 2713 CATTTGATTGAAGTCTACCTCGCAAA 2738
||||||||||||||||||||| ||||
Sbjct 2626 CATTTGATTGAAGTCTACCTCACAAA 2651
Score = 322 bits (174), Expect = 1e-86
Identities = 194/204 (95%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 2077 AGAGGATAACAGCTCTGAAGAGTGAGCATGATGCTCAGTTGAAAGCATTCAAGTGTCAGT 2136
|||||||||| ||| |||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 2074 AGAGGATAACGGCTTTGAAGAGTGAGCATGATGTTCAGTTGAAAGCATTCAAATGTCAGT 2133
Query 2137 ATGAAGATGACTGCAAGAAGCTTCAAGAAGAATTAGATCTTCAAAGGAAAAAGGAAGAGA 2196
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2134 ATGAAGATGATTGCAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGA 2193
Query 2197 GGCAACGAGCTTTGGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGC 2256
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2194 GGCAAAGAGCTTTGGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGC 2253
Query 2257 AAGAAGTAAACTCAAACAAGAACT 2280
||||||| |||||||||||| |||
Sbjct 2254 AAGAAGTTAACTCAAACAAGGACT 2277
> Ahg335550 jgi|Araly1|335550|fgenesh1_pg.C_scaffold_1002115
Length=2007
Score = 579 bits (313), Expect = 5e-164
Identities = 349/367 (95%), Gaps = 0/367 (0%)
Strand=Plus/Plus
Query 1970 GATTCTCAGTCTTCGGGAGGAGCATGAGAGTAAGGAGCTCAATCTCAAAGCCAAGTATGA 2029
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 528 GATTCTCAGTATTCGGGAGGAGCATGAGAGTAAGGAGCTGAATCTCAAAGCCAAGTATGA 587
Query 2030 CCAGGAACTGAGACAAAGTCAGATTCAGGCTGAAAACGAACTGAAAGAGAGGATAACAGC 2089
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 588 CCAGGAACTGAGACAAAATCAGATTCAGGCTGAAAGTGAACTGAAAGAGAGGATAACAGC 647
Query 2090 TCTGAAGAGTGAGCATGATGCTCAGTTGAAAGCATTCAAGTGTCAGTATGAAGATGACTG 2149
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 648 TCTCAAGAGTGAGCATGATGTTCAGTTGAAAGCATTCAAGTGTCAGTATGAAGATGATTG 707
Query 2150 CAAGAAGCTTCAAGAAGAATTAGATCTTCAAAGGAAAAAGGAAGAGAGGCAACGAGCTTT 2209
||||||||| ||||||||||||||||||||||||||||| ||||||| |||| |||||||
Sbjct 708 CAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGAAGCAAAGAGCTTT 767
Query 2210 GGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGCAAGAAGTAAACTC 2269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGCAAGAAGTAAACTC 827
Query 2270 AAACAAGAACTATTCAATTTCGAAAGATTCTCGCCTTGGTGGTAGCAAAAGAAGCGAGCA 2329
||||||| |||||||| |||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 828 AAACAAGGACTATTCAGTTTCCAAAGATTCTCGTTTTGGTGGTAGCAAAAGAAGAGAGCA 887
Query 2330 TATAAGA 2336
|||||||
Sbjct 888 TATAAGA 894
Score = 398 bits (215), Expect = 2e-109
Identities = 267/293 (91%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 1680 ACTGCTGAAACTAAGCTTGCAGAAGCAAAGAAGCAATATGACCTGATGCTAGAAAGTAAA 1739
||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||
Sbjct 187 ACTGCTGAAACTAAGCTTGTAGAAGCAAAGAAGCAATATGATCTGATGCTGGAAAGTAAA 246
Query 1740 CAGTTGGAATTGTCAAGGCACTTAAAAGAATTATCACAGAGGAACGACCAGGCAATTAAT 1799
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 247 CAGTTGGAATTATCAAGGCACTTGAAAGAATTATCACAGAGGAACGACCAGGCAATTAAC 306
Query 1800 GAGATCAGGAGGAAGTATGATGTAGAGAAGCATGAGATTATTAATTCTGAAAAAGACAAG 1859
|| |||| ||||||||||||||| |||||||| || || |||| ||||||||| | ||||
Sbjct 307 GATATCAAGAGGAAGTATGATGTTGAGAAGCAGGAAATCATTAGTTCTGAAAAGGGCAAG 366
Query 1860 GTTGAAAAAATTATCAAAGATTTGTCCAATAAATTTGATAAAGAACTCTCAGATTGCAAA 1919
|||||| | | ||||||||| |||| | ||||| |||| ||||||||||||||||||||
Sbjct 367 GTTGAAGAGACTATCAAAGAGCTGTCTACTAAATATGATGAAGAACTCTCAGATTGCAAA 426
Query 1920 GAAGAATCAAAGAGGCAACTGCTGACCATTCAAGAGGAACATTCTTCTCTGAT 1972
||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 427 GAAGAATCAAAGAGGCAGCTGCTGACCATTCAAGAGGAACATGCTTCTCTGAT 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111490147115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5