BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22270.1
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472463 jgi|Araly1|472463|fgenesh2_kg.1__2417__AT1G22270.1 813 0.0
> Ahg472463 jgi|Araly1|472463|fgenesh2_kg.1__2417__AT1G22270.1
Length=595
Score = 813 bits (440), Expect = 0.0
Identities = 559/613 (91%), Gaps = 21/613 (3%)
Strand=Plus/Plus
Query 41 TAGGGTTAAGCAAGAGAGAAACTAGAGATGAGGTTGATAACGCACAACATGCTTTCCTGC 100
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAGGGTTAAGCCAGAGAGAAACTAGAGATGAGGTTGATAACGCACAACATGCTTTCCTGC 60
Query 101 AACATCAAAGGAGTCACCAGTGGATTTCCTCTACGGATCGAAGCTGGGAACGTGATTGAG 160
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACATCAAAGGAGTCACCAATGGATTTCCTCTACGGATCGAAGCTGGGAACGTGATTGAG 120
Query 161 AAGGAAGTCGATTTCAATCCCGATTTTATCAGGCACATGTTCGCGAAGATTGAGTGGAAA 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGAAGTCGATTTCAATCCCGATTTTATCAGGCACATGTTCGCGAAGATTGAGTGGAAA 180
Query 221 GCTCTGGTGGAAGGTGCGCGTTCCATGGGATACGCTGAGTTACCGGAGGAATCTCCGGAC 280
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 181 GCTCTTGTGGAAGGTGCGCGTTCCATGGGATACGCTGAGTTACCGGAGGATTCTCCAGAC 240
Query 281 GCCGCGGTGCTGAAATCAGATGAGCCCTTCCTTAAGAAACTCCACCACGCGTTGCTCGAG 340
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GCGGCGGTGCTGAAATCAGATGAGCCCTTCCTTAAGAAACTTCACCACGCGTTGCTCGAG 300
Query 341 CTCCACCTTGAGGAAGGCGCGCTTGTTTGCCCTGAGACTGGACGGAAGTTTCCGGTTAAT 400
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCCACCTCGAAGAAGGCGCGCTTGTTTGCCCTGAGACTGGACGGAAGTTTCCGGTTAAC 360
Query 401 AAAGGAATCCCAAATATGCTTCTCCATGAAGACGAGGTTTAATTGATTGTGAGATTTTTC 460
||||||||||||||||||||||| ||||||||||||||||||||||||| || | ||||
Sbjct 361 AAAGGAATCCCAAATATGCTTCTTCATGAAGACGAGGTTTAATTGATTGGGAAAATTTTA 420
Query 461 CTTGTAAGTTT-CAATCTATGATGTTTCTGATGATGTGAACCTTTTAGTGAGATATGCAA 519
|||||| |||| | | ||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 421 CTTGTACGTTTTCGTT-TATGATGTTTCTGGTGATGTGAACCTTT-AGTGAG-TATGCAA 477
Query 520 TTGAATGATTCCATTTGAATCATCCATTGTTGTCGTTTTGAATCCTTTAATTGTGTTT-T 578
|||||| || || ||| || || ||||||| |||||||||| || || |
Sbjct 478 TTGAATCATCCC-TTT---TC-------GT---CGTTTTGGATCCTTTAATCGTATTGGT 523
Query 579 ATCAAAGAATGGTGCCTGATTGCAAAAAAGTTTATACCCTGATTTTGAGTATTGTTTCAA 638
| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 524 AGGAA-GAATGGTGCCTGATTGCTTCAAA-TTTATACCCTGATTTTGAGTATTGTTTCAA 581
Query 639 GTAGTTGGTCACT 651
|| ||||||||
Sbjct 582 CTAAATGGTCACT 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24169929378
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5