BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22275.1
Length=2874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921244 jgi|Araly1|921244|scaffold_102525.1 3096 0.0
Ahg335550 jgi|Araly1|335550|fgenesh1_pg.C_scaffold_1002115 534 1e-150
> Ahg921244 jgi|Araly1|921244|scaffold_102525.1
Length=2657
Score = 3096 bits (1676), Expect = 0.0
Identities = 1889/1994 (95%), Gaps = 6/1994 (0%)
Strand=Plus/Plus
Query 93 TCTCGATCTCCGATCTAGAGATGCAGAAGTTAGGGTTTCCGGCGATGAAGAGCTTTGATC 152
|||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1 TCTCGAACTCCGATCTCGAGATGCAGAAATTAGGGTTTCCGGCGATGAAGAGCTTGGATC 60
Query 153 AACTCCGATCGTTGCCTGGATCGGCGAAGACGTACTTCTTCTCCACTCGTCCGCCTCAGG 212
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 AACTCCGATCGTTTTCTGGATCGGCGAAGACGTACTCCTTCTCCACTCGTCCGCCTCAGG 120
Query 213 ATTCCGTCTCCTCCGGAAGTTTCTCGAATTTGAAACTCACAGCAGAGAAACTGGTGAAGG 272
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 ATTCCGTCTCCTCCGGAAGTTTCTCGAATTTGAAACTCACTGCAGAGAAACTGGTGAAGG 180
Query 273 ATCAGGCTGCGATGAGAACAGATCTCGAACTGGCGAATTGTAAGCTGAAAAAGTCAATGG 332
||||||| || |||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 181 ATCAGGCCGCTATGAGAACAGATCTAGAACTGGCGAATTGTAAGCTGAAAAAGTCACTGG 240
Query 333 AGCATGTCTATGCCTTAGAGGAGAAACTGCAGAGCGCTTTTAATGAGAATGCTAAGCTCA 392
|||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||
Sbjct 241 AGCATGTCTATGCCTTAGAGGATAAACTTCAAAACGCTTTTAATGAGAATGCTAAGCTCA 300
Query 393 GAGTTAGGCAAAAGGAAGATGAGAAGCTGTGGAGAGGACTGGAATCTAAGTTCTCTTCAA 452
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct 301 GAGTTAGGCAAAAGGAAGATGAGAAGCTTTGGAGAGGATTGGAATCTAAGTTCTCTTCGA 360
Query 453 CGAAGACTCTGTGTGATCAACTTACTGAGACTCTGCAGCATTTGGCTTCTCAAGTTCAGG 512
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 CAAAGACTCTGTGTGATCAACTTACTGAGACTCTGCAGCATTTAGCTTCTCAAGTTCAGG 420
Query 513 ATGCTGAGAAGGATAAAGGtttttttGAGACCAAATTCAATACTAGTTCAGAAGCAATAA 572
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 421 ATGCTGAGAAGGATAAAGTTTTTTTTGAGACCAAATTCAGTACTAGTTCAGAAGCAATAG 480
Query 573 ACTCTTTAAACCAGCAAATGCGAGACATGTCTTTAAGATTAGATGCTGCTAAAGAAGAAA 632
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 481 ACTCTTTAAACCAGCAAATGCGAGACATGTCTTTAAGATTAGTTACTGCTAAAGAAGAAA 540
Query 633 TCACAAGCAGAGATAAGGAATTGGAGGAGCTCAAACTCGAGAAACAACACAAGGAAATGT 692
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TCACAAGCAGAGATAAGGAATTGGAGGAGCTCAAACTCGAGAAACAACAGAAGGAAATGT 600
Query 693 TCTATCAAACTGAACGGTGCGGAACTGCCAGTCTCATTGAGAAGAAAGATGCTGTGATAA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTATCAAACTGAACGGTGCGGAACTGCCAGTCTCATTGAGAAGAAAGATGCTGTGATAA 660
Query 753 CAGAGTTGGAAACAACCGCAGCTGAAAGAAAACTCAAAATTGAAAAATTGAATTCCCAAC 812
|| |||| |||||||| ||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct 661 CAAAGTTAGAAACAACTGCAGCCGAAAGAAAACTCAACATTGAAAACTTGAACTCCCAAC 720
Query 813 TGGAAAAGCTACATCTTGAGTTAACAACAAAAGAAGACGAGGTCATACACCTTGTTAGTA 872
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 721 TGGAAAAGCTACATCTTGAGTTAACAACAAAAGAAGACGAGGTCAAAGACCTTGTTAGTA 780
Query 873 TCCAGGAGAAGTTGGAGAAAGAAAAGACGAATGTTCAGTTGAGTTCAGATGAACTGTTTG 932
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 781 TCCAGGAGAAGTTGGAGAAAGAAAAGACGAGTGTTCAGTTGAGTGCAGATGAACTGTTTG 840
Query 933 AAAAACTTGTCCGCTCAGAGCAGGAGGTTAAGAAGCTAGATGAATTAGTCCACTATTTGA 992
|||| |||||| ||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 841 AAAAGCTTGTCAGCTCAGAGCAGGAGGTTAAGAAGCTCGATGAATTTGTCCACTACTTGG 900
Query 993 TAGCTGAGCTGACTGAATTAGACAAAAAGAATCTGACCTTCAAGGAAAAGTTTGATAAAC 1052
|||||||| |||||||||| |||||||||||||||||| |||||| ||||||||||||||
Sbjct 901 TAGCTGAGTTGACTGAATTGGACAAAAAGAATCTGACCCTCAAGGGAAAGTTTGATAAAC 960
Query 1053 TAAGTGGCCTATATGATACCCACTTTATGTTGTTGCGAAAAGACAGAGATCTTGCATCAG 1112
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 961 TAAGTGGCCTATATGATACCCACTTTATGTTGTCGCGAAAAGACAGAGATCTTGCATCAG 1020
Query 1113 ATCGTGCTCAGAGATCGTTTGATCAACTCCAGGGCGAGTTATT-TAG-AGTAGCTGCCGA 1170
|||||||||| ||||||||||||||||||||||||||||| || ||| | || ||||| |
Sbjct 1021 ATCGTGCTCAAAGATCGTTTGATCAACTCCAGGGCGAGTT-TTCTAGCA-TAACTGCCCA 1078
Query 1171 AAAAGAAGCTCTGGAATCTTCAG-GCAATGAGCTAAGTGAAAAAATAGTTGAGCTCCAGA 1229
|||||||||||||||||| | | |||| || ||||||||||||||||||| ||||||||
Sbjct 1079 AAAAGAAGCTCTGGAATCAAC-GAGCAACGAACTAAGTGAAAAAATAGTTGTGCTCCAGA 1137
Query 1230 ATGATAAGGAATCTTTAATATCTCAACTTTCTGGGGTACGCTGCTCTGCAAGCCAGACCA 1289
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATGATAAAGAGTCTTTAATATCTCAACTTTCTGGGGTACGCTGCTCTGCAAGCCAGACCA 1197
Query 1290 TTGATAAATTGGAGTTTGAAGCAAAAGGACTGGTTTTAAAGAATGCTGAAACAGAATCAG 1349
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1198 TTGATAAATTGGAGTCTGAAGCAAAAGAACTGGTTTTAAAGAATGCTGAAACAGAATCAG 1257
Query 1350 TGATTTCGAAGTTGAAAGAGGAAATAGATACTTTATTGGAAAGTGTAAGGACATCAGAGG 1409
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1258 TGATTTCGAAGCTGAAAGAGGAAATAGAAACTTTATTGGAAAGTGTAAGGACATCAGCGG 1317
Query 1410 ATAAGAAGAAAGAATTGTCAATAAAGCTTTCATCATTAGAGATTGAAAGCAAAGATAAGT 1469
|||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| ||||
Sbjct 1318 ATAAGAAGCAAGAATTGTCATTAAAGCTTTCATCATTAGAGATGGAAAGCAAAGAGAAGT 1377
Query 1470 ACGAGAAACTGCAGGCAGATGCACAAAGACAAGTTGGGGAACTAGAGACTTTGCAGAAAG 1529
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 1378 ACGAGACACTGCAGGCAGATGCACATAGACATGTTGGGGAACTAGAGACTTTGCAAAAAG 1437
Query 1530 AGAGTGAGAGCCATCAGCTGCAGGCAGATTTATTGGCGAAAGAGGTGAACCAGCTCCAAA 1589
||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 1438 AGAGTGAGAGCCATCAGCTGCAGGCGGATTTGTTGGCAAAAGAGGTGAACCAGCTCCAAA 1497
Query 1590 CCATTATAGAGGAGAAAGGGCATCTAATCCTCCAGTGCAATGAGAACGAGAAGAATATAA 1649
|| | |||||||||||||| |||| ||||| ||||||||||| |||||||||||| |||
Sbjct 1498 CCGTCATAGAGGAGAAAGGAAATCTTATCCTGCAGTGCAATGAAAACGAGAAGAATTTAA 1557
Query 1650 ACCAACAAATCATTAAGGACAAGGAGCTACTCGCAACTGCTGAAACTAAGCTTGCAGAAG 1709
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1558 ACCAACAAATCATTAAGGACAAGGAGCTACTGGCAACTGCTGAAACTAAGCTTGCAGAAG 1617
Query 1710 CAAAGAAGCAATATGACCTGATGCTAGAAAGTAAACAGTTGGAATTATCAAGGCACTTAA 1769
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1618 CAAAGAAGCAATATGACCTGATGCTAGAAAATAAACAGTTGGAATTGTCAAGGCACTTAA 1677
Query 1770 AAGAATTATCACAGAGGAATGACCAGGCAATTAATGAGATCAGGAGGAAGTATGATGTAG 1829
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1678 AAGAATTATCACAGAGGAATGACCAGGCAATTAATGATATCAGGAGGAAGTATGATGTAG 1737
Query 1830 AGAAGCATGAGATTATTAATTCTGAAAAGGACAAGGTTGAAAAAATTATCAAAGAGCTGT 1889
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1738 AGAAGCAGGAGATTATTAATTCTGAAAAGGACAAGGTTGAAAGAATTATCAAGGAGCTGT 1797
Query 1890 CCACTAAATATGATAAAGGACTCTCAGATTGCAAAGAAGAATCAAAGAGGCAACTGCTAA 1949
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1798 CCACTAAATATGATAAAGAACTCTCAGATTGCAAAGAAGAATCAAAGAGGCAACTGCTGA 1857
Query 1950 CCATTCAAGAGGAACATTCTTCTCGGATTCTCAATATTCGGGAGGAGCACGAGAGTAAGG 2009
| | |||||||||||||||||||| |||||| | ||||||||||||||| ||||||||||
Sbjct 1858 CTAGTCAAGAGGAACATTCTTCTCTGATTCTTAGTATTCGGGAGGAGCATGAGAGTAAGG 1917
Query 2010 AGCTCAATCTCAAAGCCAAGTATGACCAGGAACTGAGACAAAATCAGATTCAGGCTGAAA 2069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 AGCTCAATCTCAAAGCCAAGTATGACCAGGAACTGAGACAAAATCAGATTCAGGCTGAAA 1977
Query 2070 ATGAACTGAAAGAG 2083
||||||| ||||||
Sbjct 1978 ATGAACTAAAAGAG 1991
Score = 448 bits (242), Expect = 1e-124
Identities = 273/288 (95%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 2412 CAAATCCAAAGCATCATAGCAAGGTAA-CTCATCGTGAGTATGAGGTTGAAACGAATAAT 2470
|||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 2365 CAAATCCAAAGCATCATAGCAAGG-AACCTCATCGTGAGTATGACGTTGAAACGAATAAT 2423
Query 2471 GGGAGGATACCTAAACGGAGAAAAACAAGACAGACAACAATGTTTCAGGAGCCACAAAGA 2530
|||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||
Sbjct 2424 GGGAGGATACCTAAACGGAGAAAAACAAGAAATACGACAATGTTTCAGGAGCTACAAAGA 2483
Query 2531 CGCAGTACTAGGTTGACACCCAAATTGATGACCCCCACAATCATCGCGAAGGAAACAGCA 2590
|||||||||||||||||||||||||||||||| |||| || |||||| |||||||||||
Sbjct 2484 CGCAGTACTAGGTTGACACCCAAATTGATGACACCCAAAAGCATCGCCAAGGAAACAGCG 2543
Query 2591 ATGGCCGATCATCCTCACTCTGCAAATATTGGAGACTTGTTTTCAGAAGGTTCCCTCAAC 2650
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2544 ATGGCCGGTCATCCTCGCTCTGCAAATATTGGAGACTTGTTTTCAGAAGGTTCCCTCAAC 2603
Query 2651 CCATATGCTGATGATCCCTATGCATTTGATTGAAGTCTACCACACAAA 2698
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2604 CCATATGCTGATGATCCCTATGCATTTGATTGAAGTCTACCTCACAAA 2651
Score = 339 bits (183), Expect = 9e-92
Identities = 197/204 (97%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 2082 AGAGGATAACAGCTCTGAAGAGTGAGCATGATGCTCAGTTGAAAGCATTCAAGTGTCAGT 2141
|||||||||| ||| |||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 2074 AGAGGATAACGGCTTTGAAGAGTGAGCATGATGTTCAGTTGAAAGCATTCAAATGTCAGT 2133
Query 2142 ATGAAGATGACTGCAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGA 2201
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2134 ATGAAGATGATTGCAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGA 2193
Query 2202 GGCAAAGAGCTTTGGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAGGAGC 2261
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2194 GGCAAAGAGCTTTGGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGC 2253
Query 2262 AAGAAGTAAACTCAAACAAGGACT 2285
||||||| ||||||||||||||||
Sbjct 2254 AAGAAGTTAACTCAAACAAGGACT 2277
Score = 91.6 bits (49), Expect = 3e-17
Identities = 59/64 (92%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 2353 GGAATCTCCTTTTGTAAAGGCAAAAGTAACATCTGTGTCAAATATATTGAAGGAAGCGAC 2412
||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 2273 GGACTCTCCTTTTGTAAAGACAAAAGTAACATCTGTGTCAAATATATTGAAGAAAGCTAG 2332
Query 2413 AAAT 2416
||||
Sbjct 2333 AAAT 2336
> Ahg335550 jgi|Araly1|335550|fgenesh1_pg.C_scaffold_1002115
Length=2007
Score = 534 bits (289), Expect = 1e-150
Identities = 307/316 (97%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 1975 GATTCTCAATATTCGGGAGGAGCACGAGAGTAAGGAGCTCAATCTCAAAGCCAAGTATGA 2034
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 528 GATTCTCAGTATTCGGGAGGAGCATGAGAGTAAGGAGCTGAATCTCAAAGCCAAGTATGA 587
Query 2035 CCAGGAACTGAGACAAAATCAGATTCAGGCTGAAAATGAACTGAAAGAGAGGATAACAGC 2094
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 588 CCAGGAACTGAGACAAAATCAGATTCAGGCTGAAAGTGAACTGAAAGAGAGGATAACAGC 647
Query 2095 TCTGAAGAGTGAGCATGATGCTCAGTTGAAAGCATTCAAGTGTCAGTATGAAGATGACTG 2154
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 648 TCTCAAGAGTGAGCATGATGTTCAGTTGAAAGCATTCAAGTGTCAGTATGAAGATGATTG 707
Query 2155 CAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGAGGCAAAGAGCTTT 2214
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 708 CAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGAAGCAAAGAGCTTT 767
Query 2215 GGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAGGAGCAAGAAGTAAACTC 2274
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 768 GGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGCAAGAAGTAAACTC 827
Query 2275 AAACAAGGACTATTCA 2290
||||||||||||||||
Sbjct 828 AAACAAGGACTATTCA 843
Score = 409 bits (221), Expect = 7e-113
Identities = 269/293 (92%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 1685 ACTGCTGAAACTAAGCTTGCAGAAGCAAAGAAGCAATATGACCTGATGCTAGAAAGTAAA 1744
||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||
Sbjct 187 ACTGCTGAAACTAAGCTTGTAGAAGCAAAGAAGCAATATGATCTGATGCTGGAAAGTAAA 246
Query 1745 CAGTTGGAATTATCAAGGCACTTAAAAGAATTATCACAGAGGAATGACCAGGCAATTAAT 1804
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 247 CAGTTGGAATTATCAAGGCACTTGAAAGAATTATCACAGAGGAACGACCAGGCAATTAAC 306
Query 1805 GAGATCAGGAGGAAGTATGATGTAGAGAAGCATGAGATTATTAATTCTGAAAAGGACAAG 1864
|| |||| ||||||||||||||| |||||||| || || |||| ||||||||||| ||||
Sbjct 307 GATATCAAGAGGAAGTATGATGTTGAGAAGCAGGAAATCATTAGTTCTGAAAAGGGCAAG 366
Query 1865 GTTGAAAAAATTATCAAAGAGCTGTCCACTAAATATGATAAAGGACTCTCAGATTGCAAA 1924
|||||| | | ||||||||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 367 GTTGAAGAGACTATCAAAGAGCTGTCTACTAAATATGATGAAGAACTCTCAGATTGCAAA 426
Query 1925 GAAGAATCAAAGAGGCAACTGCTAACCATTCAAGAGGAACATTCTTCTCGGAT 1977
||||||||||||||||| ||||| |||||||||||||||||| |||||| |||
Sbjct 427 GAAGAATCAAAGAGGCAGCTGCTGACCATTCAAGAGGAACATGCTTCTCTGAT 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108481017760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5