BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22275.1 Length=2874 Score E Sequences producing significant alignments: (Bits) Value Ahg921244 jgi|Araly1|921244|scaffold_102525.1 3096 0.0 Ahg335550 jgi|Araly1|335550|fgenesh1_pg.C_scaffold_1002115 534 1e-150 > Ahg921244 jgi|Araly1|921244|scaffold_102525.1 Length=2657 Score = 3096 bits (1676), Expect = 0.0 Identities = 1889/1994 (95%), Gaps = 6/1994 (0%) Strand=Plus/Plus Query 93 TCTCGATCTCCGATCTAGAGATGCAGAAGTTAGGGTTTCCGGCGATGAAGAGCTTTGATC 152 |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TCTCGAACTCCGATCTCGAGATGCAGAAATTAGGGTTTCCGGCGATGAAGAGCTTGGATC 60 Query 153 AACTCCGATCGTTGCCTGGATCGGCGAAGACGTACTTCTTCTCCACTCGTCCGCCTCAGG 212 ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 61 AACTCCGATCGTTTTCTGGATCGGCGAAGACGTACTCCTTCTCCACTCGTCCGCCTCAGG 120 Query 213 ATTCCGTCTCCTCCGGAAGTTTCTCGAATTTGAAACTCACAGCAGAGAAACTGGTGAAGG 272 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 121 ATTCCGTCTCCTCCGGAAGTTTCTCGAATTTGAAACTCACTGCAGAGAAACTGGTGAAGG 180 Query 273 ATCAGGCTGCGATGAGAACAGATCTCGAACTGGCGAATTGTAAGCTGAAAAAGTCAATGG 332 ||||||| || |||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 181 ATCAGGCCGCTATGAGAACAGATCTAGAACTGGCGAATTGTAAGCTGAAAAAGTCACTGG 240 Query 333 AGCATGTCTATGCCTTAGAGGAGAAACTGCAGAGCGCTTTTAATGAGAATGCTAAGCTCA 392 |||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||| Sbjct 241 AGCATGTCTATGCCTTAGAGGATAAACTTCAAAACGCTTTTAATGAGAATGCTAAGCTCA 300 Query 393 GAGTTAGGCAAAAGGAAGATGAGAAGCTGTGGAGAGGACTGGAATCTAAGTTCTCTTCAA 452 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | Sbjct 301 GAGTTAGGCAAAAGGAAGATGAGAAGCTTTGGAGAGGATTGGAATCTAAGTTCTCTTCGA 360 Query 453 CGAAGACTCTGTGTGATCAACTTACTGAGACTCTGCAGCATTTGGCTTCTCAAGTTCAGG 512 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 361 CAAAGACTCTGTGTGATCAACTTACTGAGACTCTGCAGCATTTAGCTTCTCAAGTTCAGG 420 Query 513 ATGCTGAGAAGGATAAAGGtttttttGAGACCAAATTCAATACTAGTTCAGAAGCAATAA 572 |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 421 ATGCTGAGAAGGATAAAGTTTTTTTTGAGACCAAATTCAGTACTAGTTCAGAAGCAATAG 480 Query 573 ACTCTTTAAACCAGCAAATGCGAGACATGTCTTTAAGATTAGATGCTGCTAAAGAAGAAA 632 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 481 ACTCTTTAAACCAGCAAATGCGAGACATGTCTTTAAGATTAGTTACTGCTAAAGAAGAAA 540 Query 633 TCACAAGCAGAGATAAGGAATTGGAGGAGCTCAAACTCGAGAAACAACACAAGGAAATGT 692 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 541 TCACAAGCAGAGATAAGGAATTGGAGGAGCTCAAACTCGAGAAACAACAGAAGGAAATGT 600 Query 693 TCTATCAAACTGAACGGTGCGGAACTGCCAGTCTCATTGAGAAGAAAGATGCTGTGATAA 752 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TCTATCAAACTGAACGGTGCGGAACTGCCAGTCTCATTGAGAAGAAAGATGCTGTGATAA 660 Query 753 CAGAGTTGGAAACAACCGCAGCTGAAAGAAAACTCAAAATTGAAAAATTGAATTCCCAAC 812 || |||| |||||||| ||||| |||||||||||||| |||||||| ||||| ||||||| Sbjct 661 CAAAGTTAGAAACAACTGCAGCCGAAAGAAAACTCAACATTGAAAACTTGAACTCCCAAC 720 Query 813 TGGAAAAGCTACATCTTGAGTTAACAACAAAAGAAGACGAGGTCATACACCTTGTTAGTA 872 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 721 TGGAAAAGCTACATCTTGAGTTAACAACAAAAGAAGACGAGGTCAAAGACCTTGTTAGTA 780 Query 873 TCCAGGAGAAGTTGGAGAAAGAAAAGACGAATGTTCAGTTGAGTTCAGATGAACTGTTTG 932 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 781 TCCAGGAGAAGTTGGAGAAAGAAAAGACGAGTGTTCAGTTGAGTGCAGATGAACTGTTTG 840 Query 933 AAAAACTTGTCCGCTCAGAGCAGGAGGTTAAGAAGCTAGATGAATTAGTCCACTATTTGA 992 |||| |||||| ||||||||||||||||||||||||| |||||||| |||||||| ||| Sbjct 841 AAAAGCTTGTCAGCTCAGAGCAGGAGGTTAAGAAGCTCGATGAATTTGTCCACTACTTGG 900 Query 993 TAGCTGAGCTGACTGAATTAGACAAAAAGAATCTGACCTTCAAGGAAAAGTTTGATAAAC 1052 |||||||| |||||||||| |||||||||||||||||| |||||| |||||||||||||| Sbjct 901 TAGCTGAGTTGACTGAATTGGACAAAAAGAATCTGACCCTCAAGGGAAAGTTTGATAAAC 960 Query 1053 TAAGTGGCCTATATGATACCCACTTTATGTTGTTGCGAAAAGACAGAGATCTTGCATCAG 1112 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 961 TAAGTGGCCTATATGATACCCACTTTATGTTGTCGCGAAAAGACAGAGATCTTGCATCAG 1020 Query 1113 ATCGTGCTCAGAGATCGTTTGATCAACTCCAGGGCGAGTTATT-TAG-AGTAGCTGCCGA 1170 |||||||||| ||||||||||||||||||||||||||||| || ||| | || ||||| | Sbjct 1021 ATCGTGCTCAAAGATCGTTTGATCAACTCCAGGGCGAGTT-TTCTAGCA-TAACTGCCCA 1078 Query 1171 AAAAGAAGCTCTGGAATCTTCAG-GCAATGAGCTAAGTGAAAAAATAGTTGAGCTCCAGA 1229 |||||||||||||||||| | | |||| || ||||||||||||||||||| |||||||| Sbjct 1079 AAAAGAAGCTCTGGAATCAAC-GAGCAACGAACTAAGTGAAAAAATAGTTGTGCTCCAGA 1137 Query 1230 ATGATAAGGAATCTTTAATATCTCAACTTTCTGGGGTACGCTGCTCTGCAAGCCAGACCA 1289 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 ATGATAAAGAGTCTTTAATATCTCAACTTTCTGGGGTACGCTGCTCTGCAAGCCAGACCA 1197 Query 1290 TTGATAAATTGGAGTTTGAAGCAAAAGGACTGGTTTTAAAGAATGCTGAAACAGAATCAG 1349 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1198 TTGATAAATTGGAGTCTGAAGCAAAAGAACTGGTTTTAAAGAATGCTGAAACAGAATCAG 1257 Query 1350 TGATTTCGAAGTTGAAAGAGGAAATAGATACTTTATTGGAAAGTGTAAGGACATCAGAGG 1409 ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 1258 TGATTTCGAAGCTGAAAGAGGAAATAGAAACTTTATTGGAAAGTGTAAGGACATCAGCGG 1317 Query 1410 ATAAGAAGAAAGAATTGTCAATAAAGCTTTCATCATTAGAGATTGAAAGCAAAGATAAGT 1469 |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||| Sbjct 1318 ATAAGAAGCAAGAATTGTCATTAAAGCTTTCATCATTAGAGATGGAAAGCAAAGAGAAGT 1377 Query 1470 ACGAGAAACTGCAGGCAGATGCACAAAGACAAGTTGGGGAACTAGAGACTTTGCAGAAAG 1529 |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |||| Sbjct 1378 ACGAGACACTGCAGGCAGATGCACATAGACATGTTGGGGAACTAGAGACTTTGCAAAAAG 1437 Query 1530 AGAGTGAGAGCCATCAGCTGCAGGCAGATTTATTGGCGAAAGAGGTGAACCAGCTCCAAA 1589 ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| Sbjct 1438 AGAGTGAGAGCCATCAGCTGCAGGCGGATTTGTTGGCAAAAGAGGTGAACCAGCTCCAAA 1497 Query 1590 CCATTATAGAGGAGAAAGGGCATCTAATCCTCCAGTGCAATGAGAACGAGAAGAATATAA 1649 || | |||||||||||||| |||| ||||| ||||||||||| |||||||||||| ||| Sbjct 1498 CCGTCATAGAGGAGAAAGGAAATCTTATCCTGCAGTGCAATGAAAACGAGAAGAATTTAA 1557 Query 1650 ACCAACAAATCATTAAGGACAAGGAGCTACTCGCAACTGCTGAAACTAAGCTTGCAGAAG 1709 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1558 ACCAACAAATCATTAAGGACAAGGAGCTACTGGCAACTGCTGAAACTAAGCTTGCAGAAG 1617 Query 1710 CAAAGAAGCAATATGACCTGATGCTAGAAAGTAAACAGTTGGAATTATCAAGGCACTTAA 1769 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1618 CAAAGAAGCAATATGACCTGATGCTAGAAAATAAACAGTTGGAATTGTCAAGGCACTTAA 1677 Query 1770 AAGAATTATCACAGAGGAATGACCAGGCAATTAATGAGATCAGGAGGAAGTATGATGTAG 1829 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1678 AAGAATTATCACAGAGGAATGACCAGGCAATTAATGATATCAGGAGGAAGTATGATGTAG 1737 Query 1830 AGAAGCATGAGATTATTAATTCTGAAAAGGACAAGGTTGAAAAAATTATCAAAGAGCTGT 1889 ||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 1738 AGAAGCAGGAGATTATTAATTCTGAAAAGGACAAGGTTGAAAGAATTATCAAGGAGCTGT 1797 Query 1890 CCACTAAATATGATAAAGGACTCTCAGATTGCAAAGAAGAATCAAAGAGGCAACTGCTAA 1949 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 1798 CCACTAAATATGATAAAGAACTCTCAGATTGCAAAGAAGAATCAAAGAGGCAACTGCTGA 1857 Query 1950 CCATTCAAGAGGAACATTCTTCTCGGATTCTCAATATTCGGGAGGAGCACGAGAGTAAGG 2009 | | |||||||||||||||||||| |||||| | ||||||||||||||| |||||||||| Sbjct 1858 CTAGTCAAGAGGAACATTCTTCTCTGATTCTTAGTATTCGGGAGGAGCATGAGAGTAAGG 1917 Query 2010 AGCTCAATCTCAAAGCCAAGTATGACCAGGAACTGAGACAAAATCAGATTCAGGCTGAAA 2069 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1918 AGCTCAATCTCAAAGCCAAGTATGACCAGGAACTGAGACAAAATCAGATTCAGGCTGAAA 1977 Query 2070 ATGAACTGAAAGAG 2083 ||||||| |||||| Sbjct 1978 ATGAACTAAAAGAG 1991 Score = 448 bits (242), Expect = 1e-124 Identities = 273/288 (95%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 2412 CAAATCCAAAGCATCATAGCAAGGTAA-CTCATCGTGAGTATGAGGTTGAAACGAATAAT 2470 |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| Sbjct 2365 CAAATCCAAAGCATCATAGCAAGG-AACCTCATCGTGAGTATGACGTTGAAACGAATAAT 2423 Query 2471 GGGAGGATACCTAAACGGAGAAAAACAAGACAGACAACAATGTTTCAGGAGCCACAAAGA 2530 |||||||||||||||||||||||||||||| | || |||||||||||||||| ||||||| Sbjct 2424 GGGAGGATACCTAAACGGAGAAAAACAAGAAATACGACAATGTTTCAGGAGCTACAAAGA 2483 Query 2531 CGCAGTACTAGGTTGACACCCAAATTGATGACCCCCACAATCATCGCGAAGGAAACAGCA 2590 |||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||| Sbjct 2484 CGCAGTACTAGGTTGACACCCAAATTGATGACACCCAAAAGCATCGCCAAGGAAACAGCG 2543 Query 2591 ATGGCCGATCATCCTCACTCTGCAAATATTGGAGACTTGTTTTCAGAAGGTTCCCTCAAC 2650 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2544 ATGGCCGGTCATCCTCGCTCTGCAAATATTGGAGACTTGTTTTCAGAAGGTTCCCTCAAC 2603 Query 2651 CCATATGCTGATGATCCCTATGCATTTGATTGAAGTCTACCACACAAA 2698 ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2604 CCATATGCTGATGATCCCTATGCATTTGATTGAAGTCTACCTCACAAA 2651 Score = 339 bits (183), Expect = 9e-92 Identities = 197/204 (97%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 2082 AGAGGATAACAGCTCTGAAGAGTGAGCATGATGCTCAGTTGAAAGCATTCAAGTGTCAGT 2141 |||||||||| ||| |||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 2074 AGAGGATAACGGCTTTGAAGAGTGAGCATGATGTTCAGTTGAAAGCATTCAAATGTCAGT 2133 Query 2142 ATGAAGATGACTGCAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGA 2201 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2134 ATGAAGATGATTGCAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGA 2193 Query 2202 GGCAAAGAGCTTTGGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAGGAGC 2261 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2194 GGCAAAGAGCTTTGGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGC 2253 Query 2262 AAGAAGTAAACTCAAACAAGGACT 2285 ||||||| |||||||||||||||| Sbjct 2254 AAGAAGTTAACTCAAACAAGGACT 2277 Score = 91.6 bits (49), Expect = 3e-17 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2353 GGAATCTCCTTTTGTAAAGGCAAAAGTAACATCTGTGTCAAATATATTGAAGGAAGCGAC 2412 ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct 2273 GGACTCTCCTTTTGTAAAGACAAAAGTAACATCTGTGTCAAATATATTGAAGAAAGCTAG 2332 Query 2413 AAAT 2416 |||| Sbjct 2333 AAAT 2336 > Ahg335550 jgi|Araly1|335550|fgenesh1_pg.C_scaffold_1002115 Length=2007 Score = 534 bits (289), Expect = 1e-150 Identities = 307/316 (97%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 1975 GATTCTCAATATTCGGGAGGAGCACGAGAGTAAGGAGCTCAATCTCAAAGCCAAGTATGA 2034 |||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 528 GATTCTCAGTATTCGGGAGGAGCATGAGAGTAAGGAGCTGAATCTCAAAGCCAAGTATGA 587 Query 2035 CCAGGAACTGAGACAAAATCAGATTCAGGCTGAAAATGAACTGAAAGAGAGGATAACAGC 2094 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 588 CCAGGAACTGAGACAAAATCAGATTCAGGCTGAAAGTGAACTGAAAGAGAGGATAACAGC 647 Query 2095 TCTGAAGAGTGAGCATGATGCTCAGTTGAAAGCATTCAAGTGTCAGTATGAAGATGACTG 2154 ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 648 TCTCAAGAGTGAGCATGATGTTCAGTTGAAAGCATTCAAGTGTCAGTATGAAGATGATTG 707 Query 2155 CAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGAGGCAAAGAGCTTT 2214 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 708 CAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGAAGCAAAGAGCTTT 767 Query 2215 GGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAGGAGCAAGAAGTAAACTC 2274 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 768 GGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGCAAGAAGTAAACTC 827 Query 2275 AAACAAGGACTATTCA 2290 |||||||||||||||| Sbjct 828 AAACAAGGACTATTCA 843 Score = 409 bits (221), Expect = 7e-113 Identities = 269/293 (92%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 1685 ACTGCTGAAACTAAGCTTGCAGAAGCAAAGAAGCAATATGACCTGATGCTAGAAAGTAAA 1744 ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| Sbjct 187 ACTGCTGAAACTAAGCTTGTAGAAGCAAAGAAGCAATATGATCTGATGCTGGAAAGTAAA 246 Query 1745 CAGTTGGAATTATCAAGGCACTTAAAAGAATTATCACAGAGGAATGACCAGGCAATTAAT 1804 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 247 CAGTTGGAATTATCAAGGCACTTGAAAGAATTATCACAGAGGAACGACCAGGCAATTAAC 306 Query 1805 GAGATCAGGAGGAAGTATGATGTAGAGAAGCATGAGATTATTAATTCTGAAAAGGACAAG 1864 || |||| ||||||||||||||| |||||||| || || |||| ||||||||||| |||| Sbjct 307 GATATCAAGAGGAAGTATGATGTTGAGAAGCAGGAAATCATTAGTTCTGAAAAGGGCAAG 366 Query 1865 GTTGAAAAAATTATCAAAGAGCTGTCCACTAAATATGATAAAGGACTCTCAGATTGCAAA 1924 |||||| | | ||||||||||||||| |||||||||||| ||| |||||||||||||||| Sbjct 367 GTTGAAGAGACTATCAAAGAGCTGTCTACTAAATATGATGAAGAACTCTCAGATTGCAAA 426 Query 1925 GAAGAATCAAAGAGGCAACTGCTAACCATTCAAGAGGAACATTCTTCTCGGAT 1977 ||||||||||||||||| ||||| |||||||||||||||||| |||||| ||| Sbjct 427 GAAGAATCAAAGAGGCAGCTGCTGACCATTCAAGAGGAACATGCTTCTCTGAT 479 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108481017760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5