BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22280.3
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472467 jgi|Araly1|472467|fgenesh2_kg.1__2421__AT1G22280.1 1701 0.0
Ahg943665 jgi|Araly1|943665|scaffold_604209.1 213 3e-54
> Ahg472467 jgi|Araly1|472467|fgenesh2_kg.1__2421__AT1G22280.1
Length=1383
Score = 1701 bits (921), Expect = 0.0
Identities = 1269/1420 (89%), Gaps = 92/1420 (6%)
Strand=Plus/Plus
Query 78 TTCGCGTAGGAAAAAGACATAAACGAAAAGAGAGCGAAGAC-TTCGTCGCATAGACTTTG 136
|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2 TTCGCGGAGGAAAAAGACATAAACGAAAAGAGAGCGAAGACTTTCGTCGCAGAGACTTTG 61
Query 137 TAGATTTATCGTTGAGAGTACCTCAAACaaaaaaaaaTTGAAAACCAAATTAGGGTTTTT 196
| ||||||||||| |||||||| | |||||||||| |||||||||||||||||||
Sbjct 62 TGGATTTATCGTT--GAGTACCT----C--AAAAAAATTG-AAACCAAATTAGGGTTTTT 112
Query 197 AATTTCCAGATTGTTTTGTTTATTTGAATAAATCTCCGCAAGTTTCAATTAGGTTGCAAA 256
| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 113 ATTTTGCAGATTGTTTTGTTTATTTGAATAAATCTGCGCAAGTTTGAATTAGGTTGCAAA 172
Query 257 AATCGAAGAAATTTTCTTCGATTCaaaaaaaaTGGGAAAATTTTGTTGCTTCACTTCCGC 316
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 173 AATCGAAGAAAATATCTTCGATTC-AAAAAAATGGGAAAATTTTGTTGCTTCACTTCCGC 231
Query 317 TTCTGAGGTTGTGGGAGGACAATCATCATCACGATCAGGTAAAGGAAGAAGTGATGAAGG 376
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 232 TTCTGAGGTTGTGGGAGGACAATCATCATCTCGATCAGGTAAAGGAAGAAGTGATGAAGG 291
Query 377 GATGATCAAGTATGGTTTTAGTCTAGTGAAAGGAAAAGCTAACCATCCAATGGAAGATTA 436
||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 292 GATGATCAAGTATGGCTTTAGTCTAGTGAAAGGGAAAGCTAATCATCCCATGGAAGATTA 351
Query 437 TCATGTTGCTAACTTTATCAACATCCAAGACCATGAATTGGGTCTTTTTGCTATTTATGA 496
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 352 TCATGTTGCTAACTTTATCAACATTCAAGACCATGAATTGGGGCTTTTTGCTATTTATGA 411
Query 497 TGGTCATATGGGTGATAGTGTCCCTGCTTACTTGCAGAAACGTCTCTTCTCCAATATCCT 556
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 412 TGGTCATATGGGTGATAGTGTCCCTGCTTACTTGCAGAAACGCCTCTTCTCCAATATCCT 471
Query 557 TAAGGAGGTaaaaacaaaaaaaaaGGGAGAGTTTTGGGTTGATCCTCGAAGGTCTATTGC 616
| | ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 472 T-A--AGG---------------AGGGAGAGTTCTGGGTTGATCCTCGAAGGTCTATTGC 513
Query 617 AAAAGCTTATGAGAAGACGGACCAAGCGATTCTATCGAATAGTTCTGACTTGGGTCGTGG 676
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 514 AAAAGCTTATGAGAAGACGGACCAGGCGATTCTATCAAATAGTTCTGACTTGGGTCGTGG 573
Query 677 TGGTTCTACTGCTGTGACTGCTATATTGATTAATGGGAGAAAGTTGTGGATAGCTAATGT 736
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 574 CGGGTCTACAGCTGTGACTGCTATATTGATTAATGGGAGAAAGTTGTGGATAGCCAATGT 633
Query 737 TGGTGATTCACGAGCTGTTCTTTCTCATGGTGGCGCTATAACGCAGATGAGTACAGATCA 796
||| ||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 634 TGGGGATTCACGAGCAGTTCTTTCTCAAGGTGGCACAATAACGCAGATGAGTACAGATCA 693
Query 797 TGAGCCTCGTACTGAAAGGTCGAGTATTGAAGATAGAGGTGGATTTGTATCCAATCTACC 856
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 694 TGAGCCTCGTACTGAAAGGTCGAGCATTGAAGATAGAGGTGGATTTGTATCCAATCTACC 753
Query 857 AGGTGATGTTCCTCGGGTGAATGGTCAATTAGCTGTGTCTCGTGCTTTTGGAGATAAGGG 916
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 754 AGGTGATGTTCCTCGGGTGAATGGTCAATTAGCTGTGAGTCGTGCTTTTGGAGATAAGGG 813
Query 917 ACTTAAGACACACTTGAGTTCAGAGCCTGACATAAAAGAAGCTACTGTAGATAGCCAGAC 976
||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 814 ACTTAAGACACACCTGAGTTCAGAACCTGACATAAAAGAAGCTATTGTAGATAGCCAGAC 873
Query 977 AGATGTTCTTCTCTTGGCTAGTGATGGCATCTGGAAGGTGATGACAAATGAAGAGGCAAT 1036
|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 874 AGATGTTCTTCTTTTGGCCAGTGATGGCATTTGGAAGGTAATGACAAATGAAGAGGCAAT 933
Query 1037 GGAGATAGCGAGAAGAGTGAAAGATCCACAGAAAGCGGCAAAGGAATTAACAGCTGAAGC 1096
||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 934 GGAGATAGCTAGAAAAGTGAAAGATCCACAGAAAGCAGCAAAGGAATTAACAGCTGAAGC 993
Query 1097 ATTGAGAAGAGAGAGTAAAGACGACATATCTTGTGTCGTGGTCCGATTCAGATGACAAAC 1156
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 994 ATTGAGAAGAGAGAGTAAAGACGACATATCTTGTGTCGTAGTCCGATTCAGATGACAAAC 1053
Query 1157 TCTCTGAAAGG--AT--A-C-TT-ACGGGGAGATGGGTTCCTTATATAATAATTT-CAAT 1208
||| ||| || || | | || ||| |||||| | | | | |||| ||||
Sbjct 1054 TCT--GAAGGGGGATGGATCATTTACGAGGAGATAA-TA----A-ACCAGCATTTTCAAT 1105
Query 1209 CAAAGATTCATCAGGACAAAAAAGCTTGTTTT-CACTGGATTCGACTCTGATGATTCTGG 1267
|||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct 1106 CAAAGATTCATCAGGACAAAAAAGCTTGTTTTTCACAGGATTCGACTCAGATGATTCTGG 1165
Query 1268 TTCGGTTTAGGACCGGTCTAAGTTTCAATTTGTGATTAGCTGCTTCTTGCTATAGCTTAT 1327
| | | |||| | | |||||||| ||| |||||||||||||||||||
Sbjct 1166 T-C---------C-GGTC---G----A-TTTGTGAT-AGCCGCTTCTTGCTATAGCTTAT 1205
Query 1328 GTGCGTTCGTTGTGTAAATTGTGTGTTTTAAA-GACGATAAGAAAATGAACAAAAAAGGA 1386
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1206 GTGCGTTCGTTGTGTAAATTGTGTGTTTTAAAAGACGACAAGAATATGAACAAAAAAGG- 1264
Query 1387 GTGGGGAATGGAGTTTTGTGGTGGGTGATGGGGGGTTTTGTTATTATAATTGGTTGATTT 1446
|| | ||| | | | | | || | |||||||||||||||||||||
Sbjct 1265 -TG---A-TGG-G----G-GAT---T--TG-----T---GTTATTATAATTGGTTGATTT 1300
Query 1447 GTTATATTTAATCATCGGGATATAAATATTAGGATGTTTT 1486
||||||||||||||||| ||||||||||||||||||||||
Sbjct 1301 GTTATATTTAATCATCGAGATATAAATATTAGGATGTTTT 1340
> Ahg943665 jgi|Araly1|943665|scaffold_604209.1
Length=281
Score = 213 bits (115), Expect = 3e-54
Identities = 127/133 (95%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 908 AGATAAGGGACTTAAGACACACTTGAGTTCAGAGCCTGACATAAAAGAAGCTACTGTAGA 967
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 99 AGATAAGGGACTTAAGACACACTTGAGTTCAGAACCTGACATAAAAGAAGCCACTGTAGA 158
Query 968 TAGCCAGACAGATGTTCTTCTCTTGGCTAGTGATGGCATCTGGAAGGTGATGACAAATGA 1027
|||||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||||
Sbjct 159 TAGCCAGACAGATGTTCTTCTCGTGGCCAGTGATGGCATTTGGAAGGTAATGACAAATGA 218
Query 1028 AGAGGCAATGGAG 1040
|||||||||||||
Sbjct 219 AGAGGCAATGGAG 231
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 823 TTGAAGATAGAGGTGGATTTGTATCCAATCTACCAG 858
||||||||||||||||||||||||||||||||||||
Sbjct 65 TTGAAGATAGAGGTGGATTTGTATCCAATCTACCAG 100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5