BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22300.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313117 jgi|Araly1|313117|fgenesh1_pm.C_scaffold_1001897 1264 0.0
> Ahg313117 jgi|Araly1|313117|fgenesh1_pm.C_scaffold_1001897
Length=765
Score = 1264 bits (684), Expect = 0.0
Identities = 734/759 (97%), Gaps = 0/759 (0%)
Strand=Plus/Plus
Query 117 ATGGAGAATGAGAGGGAAAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGA 176
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAGAATGAGAGGGAAAAGCAGGTTTACTTGGCTAAGCTCTCTGAGCAAACCGAAAGA 60
Query 177 TACGATGAAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTGTG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACGATGAAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTGTG 120
Query 237 GAAGAGAGGAATCTTGTATCTGTAGGGTACAAGAATGTGATTGGTGCAAGGAGAGCATCA 296
|| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 121 GAGGAGAGAAATCTTGTTTCTGTGGGGTACAAGAATGTGATTGGTGCAAGGAGAGCTTCA 180
Query 297 TGGAGAATACTATCTTCCATTGAGCAGAAGGAAGAGTCCAAGGGAAATGATGAAAATGTC 356
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TGGAGAATACTATCCTCCATTGAGCAGAAGGAAGAGTCCAAGGGAAATGAGGAAAATGTC 240
Query 357 AAGAGGCTTAAGAATTATCGTAAGAGAGTTGAAGATGAGCTTGCTAAAGTTTGTAATGAC 416
||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 241 AAGAGGCTTAAGACTTATCGAAAGAGGGTTGAAGATGAGCTTGCCAAAGTTTGTAATGAC 300
Query 417 ATCTTGTCTGTCATTGATAAGCATCTCATTCCATCGTCTAACGCTGTGGAGTCAACTGTC 476
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCTTGTCCGTCATCGATAAGCATCTCATTCCATCGTCTAACGCTGTGGAGTCAACTGTC 360
Query 477 TTTTTCTACAAAATGAAAGGAGATTACTATCGCTATCTTGCGGAGTTCAGTTCTGGTGCT 536
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 361 TTTTTCTACAAAATGAAAGGAGATTACTATCGCTATCTGGCAGAGTTCAGTTCTGGTACT 420
Query 537 GAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGGCTGCTGTTGCTGCTGCA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGGCTGCTGTTGCTGCTGCA 480
Query 597 GAGAATGGTTTGGCACCCACACATCCAGTTAGACTTGGCTTGGCGTTGAACTTTTCAGTT 656
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GAGACTGGTTTGGCACCCACACATCCAGTTAGACTTGGCTTGGCATTGAACTTTTCAGTT 540
Query 657 TTCTACTATGAGATCTTGAACTCTCCCGAAAGCGCATGCCAATTGGCTAAGCAAGCATTC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCTACTATGAGATCTTGAACTCTCCCGAAAGCGCATGCCAATTGGCTAAGCAAGCATTC 600
Query 717 GATGATGCAATTGCTGAACTTGACAGCCTCAACGAGGAATCATACAAAGACAGCACTCTT 776
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 601 GATGATGCAATTGCTGAACTTGACAGCCTCAACGAGGATTCATACAAGGACAGCACTCTT 660
Query 777 ATTATGCAGCTACTTAGAGACAATCTCACCTTGTGGACTTCAGACCTTAATGAGGAAGGA 836
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 ATTATGCAGCTACTTAGAGACAATCTCACCTTGTGGACTTCAGACCTCAATGAGGAAGGA 720
Query 837 GATGAGAGAACCAAAGGTGCTGATGAGCCTCAAGATGAG 875
|||||| || ||||||||||||||||||||||||| |||
Sbjct 721 GATGAGCGATCCAAAGGTGCTGATGAGCCTCAAGAAGAG 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5