BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22310.2 Length=1850 Score E Sequences producing significant alignments: (Bits) Value Ahg472471 jgi|Araly1|472471|fgenesh2_kg.1__2425__AT1G22310.2 2281 0.0 > Ahg472471 jgi|Araly1|472471|fgenesh2_kg.1__2425__AT1G22310.2 Length=1795 Score = 2281 bits (1235), Expect = 0.0 Identities = 1664/1855 (90%), Gaps = 93/1855 (5%) Strand=Plus/Plus Query 29 GAAGTTATCGGAATTTGCATCTTTTTGATTCCGCCGTTTTGCGTCTGACGTGTTCACGGC 88 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 GAAGTTATCGGAATTTGCATCTTTTTGATTCCGCCG-TTTGCGTCTGACGTGTTCACGGC 59 Query 89 GGCAACCTCCATGGACGACGGTGACCTCGGTAACAACCACCATAACTTCCTCGGTGGAGC 148 |||||||||||||||| ||||||||||||| ||||||||||| ||||||| || ||| || Sbjct 60 GGCAACCTCCATGGACAACGGTGACCTCGGAAACAACCACCACAACTTCCACGATGGTGC 119 Query 149 TGGTAATCGTTTATCAGCCGAATCTTTGCCGTTAATCGATACGCGTCTTTTGTCCCAGTC 208 || ||| |||||||||||||||||||||||||||||||||| |||||| || |||||||| Sbjct 120 TGATAACCGTTTATCAGCCGAATCTTTGCCGTTAATCGATATGCGTCTCTTATCCCAGTC 179 Query 209 AGAACTTCGCGctctctctcagtgttcttctctatctccatcttcttcagcgtctctcGC 268 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 180 AGAACTTCGCGCTCTCTCTCACTGTTCTTCTCTATCTCCATCTTCTTCAGCGTCTCTCGC 239 Query 269 CGCTTCCGCCGGTGGAGACGACGATTTGACACCAAAGATCGATCGCTCCGTTTTCAATGA 328 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 240 TACTTCCGCCGGTGGAGACGACGATTTGACACCAAAGATCGATCGCTCCGTCTTCAATGA 299 Query 329 GTCCGCTGGTAGCCGGAAACAGACATTTCTCCGTCTCCGCCTTGCGCGCCACCCTCAACC 388 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 300 GTCCGCTGGGAGCCGGAAACAGACATTTCTCCGTCTCCGCCTTGCGCGTCACCCTCAACC 359 Query 389 ACCGGAGGAACCTCCTTCGCCGCAACGTCAGAGAGACGATTCTTCCCGTGAAGAACAAAC 448 | ||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 360 AACGGAGAAACCTCCTTCGCCGCAACGTCAAAGAGACGATTCTTCCCTTGAAGAACAAAC 419 Query 449 GCAAGTCGCGTCGCTTCTCAGATCTCTGTTCAATGTCGATTCGAATCAGAGTAAAGAGGA 508 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 420 GCAAGTCGCGTCGCTTCTCAGATCTCTGTTCAATGTCGATTCGATTCAGAGTAAAGAGGA 479 Query 509 AGAAGACGAAGGAGAGGAAG-AGCTCGAAGATAACGAAGGTCAGATCCATTATAACAGCT 567 |||||||||||||||||||| || |||| || |||||||||||||||||||||||||||| Sbjct 480 AGAAGACGAAGGAGAGGAAGAAG-TCGAGGAAAACGAAGGTCAGATCCATTATAACAGCT 538 Query 568 ATGTTTATCAGAGACCTAATCTTGATTCGATTCAGAACGTTCTGATTCAGGGAACCTCCG 627 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 539 ATGTTTATCAGAGACCGAATCTTGATTCGGTTCAGAACGTTCTGATTCAGGGAACCTCCG 598 Query 628 GGAATAAAATAAAGAGGAAGCGTGGACGGCCGAGGAAGATTCGGAACCCTAGC---GAAG 684 ||||| |||| ||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 599 GGAATGAAATCAAGAGGAAGCGAGGACGGCCGAGGAAGATTCGGAACCCTAGCGAGGAAG 658 Query 685 AGAATGAGGTTTTGGATTTAACTGGTGAAGCATCTACGTATGTGTTTGTAGATAAAACTA 744 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 659 AGACGGAGGTTTTGGATTTAACAGGTGAAGCATCTACGTATGTGTTTGTAGATAAAACTA 718 Query 745 GTAGCAATTTGGGAATGGTGAGTAGAGTTGGTAGTTCAGGAATCTCCCTGGATTCAAATT 804 |||||||||||||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 719 GTAGCAATTTGGGAATAGAGAGTAGATTTGGTAGTTCAGGAATCTCCATGGATTCAAATT 778 Query 805 CAGTgaagagaaagagaggtcgtcctccaaagaataaggaagagataatgaacctagaga 864 | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 779 CTGTGAAGAGAAAGAGAGGTCGTCCTCCAAAGAATAAGGAAGAGATAATGAACTTGGAGA 838 Query 865 agagagaCAGTGCAATTGTGAATAT-TTCTGCGTTTGATAAGGAAGAGTTAGTAGTGAAC 923 | |||||||||||||||| |||| | |||||| || |||||||||||| | ||||||| Sbjct 839 ACAGAGACAGTGCAATTGGGAAT-TCTTCTGCATTGGATAAGGAAGAG-T--TAGTGAAA 894 Query 924 TTGGAGAACAGAGAAGGTACAATTGTGGATCTCTCTGCATTGGCTAGTGTTTCAGAGGAT 983 |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 895 TTGGAGAACAGAGAAGGTGCAATTGTGGATCTTTCTGCATTGGCTAGTGTTTCAGAGGAT 954 Query 984 CCATACGAAGAGGAGCTGAGGAGGATCACCGTTGGGTTGAAGACAAAGGAAGAGATCTTA 1043 ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 955 CCATATGAAGAGGATCTGAGGAGGATCACTGTTGGGTTGAAGACAAAGGAAGAGATCTTA 1014 Query 1044 GGTTTCTTGGAACAA-TTGAATGGTGAATGGGTGAATATAGGGAAGAAGAAGAAAGTTGT 1102 | ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 GTTTTCTTGGAACAACTT-AATGGTGAATGGGTGAATATAGGGAAGAAGAAGAAAGTTGT 1073 Query 1103 GA-ATGCTTGTGATTATGGAGGATACTTGCCTAGAGGATGGAGACTTATGCTCTACATCA 1161 || | |||||||||||||||||||||||||| |||||||||| ||||||||||||||| | Sbjct 1074 GAGA-GCTTGTGATTATGGAGGATACTTGCCCAGAGGATGGAAACTTATGCTCTACATAA 1132 Query 1162 AAAGGAAAGGTAGCAATTTGTTGCTGGCTTGTCGCAGATACATAAGCCCTGATGGGCAAC 1221 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1133 AAAAGAAAGGTAGCAATTTGTTGCTGGCTTGTCGCAGATACATAAGCCCTGATGGGCAAC 1192 Query 1222 AGTTTGAAACCTGCAAGGAAGTCTCCACATATCTACGATC-ACTTCTTGAATCCCCAAGC 1280 |||||||||||||||| ||||||||||||||||| ||||| | | ||||| ||||| ||| Sbjct 1193 AGTTTGAAACCTGCAACGAAGTCTCCACATATCTGCGATCTA-TCCTTGAGTCCCCGAGC 1251 Query 1281 AAGAACCAACATTATTACTTGCAATCTGACAACAAGACTCTAGGACAACAACCAGTGATA 1340 ||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| | | Sbjct 1252 AAGAACCGACACTATTACTTGCAATCTGATAACAAGACTCTAGGACAACAGCCAGTAACA 1311 Query 1341 GCTAACGAATCTTTACTAGGTAACTCTGATTCCATGGACT--C-TGA---G-AC----AA 1389 |||||||| |||| ||||||||||||| |||||||||||| | || | || || Sbjct 1312 GCTAACGATTCTTCACTAGGTAACTCTAATTCCATGGACTTGCCTGTTCCGGACTCTGAA 1371 Query 1390 ----TGCAGTACCTTGAGAGTGGAAGAACCAGCAGTGAGGTGTTTGAGGAAGCAAAAGCC 1445 |||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1372 AAAATGCAGTACCTTGAGAGTGGAAGAACCGGCAGTGAGGTGTTTGAGGAAGCGAA---- 1427 Query 1446 GTAGAGAATGGCAATGAAGCAGATCGAGTGAAAACCAGTCTGATGCAGAAAGATGATAAT 1505 | | | || | |||||||||| ||||||||||||||||| || |||||||||||||| Sbjct 1428 -T-G-G--TG--A-TGAAGCAGATGGAGTGAAAACCAGTCTGGTGGAGAAAGATGATAAT 1479 Query 1506 GCAGATTTTCTGAATGGAGTTGAGGACAACGACGATGATATGAAGAAAAGAGATGGTAAC 1565 || |||||||||||||||| | ||| ||||| || | ||||||||||||||||||| Sbjct 1480 GCTGATTTTCTGAATGGAG---ACGACCACGACCAT-AC--GAAGAAAAGAGATGGTAAC 1533 Query 1566 ATGGAGAATTTGGC-GACTCTATCGAATTCAGAAATGACGAAAAGCCTACCGACAACGAC 1624 |||||||||||||| | |||||||||| || ||| ||| | | | |||| Sbjct 1534 ATGGAGAATTTGGCAG-CTCTATCGAA---AGCCATGTCGA------T---G-C--CGAC 1577 Query 1625 TAATGAGCTTCAACAGTATTTCAGCTCACAAATCAACCGAGTTCAGTGACCATTTCTTTT 1684 | ||||||||||||||||||||| |||||||||| || |||||||||||||| ||| ||| Sbjct 1578 TGATGAGCTTCAACAGTATTTCAACTCACAAATCCACTGAGTTCAGTGACCAGTTCCTTT 1637 Query 1685 ACCTGGAACAAATTGTTTTCTCATTCTAGTTCAGATTTTATATTTTATGCAAACTAAAAG 1744 |||||||||||| |||||||||||||||||||||||||||| ||| ||||| || | Sbjct 1638 ACCTGGAACAAAATGTTTTCTCATTCTAGTTCAGATTTTATGTTTCATGCA---TA---G 1691 Query 1745 CGTGTTGTAGCTAACTACAGGATATAGAATTTGAAAGGG-CCATGTACAAAACATTT-GA 1802 | | | ||| | || | ||||||||||||||| || |||||||||||||| || | Sbjct 1692 C-TA----A-CTA-C-AC-G-ATATAGAATTTGAAAAGGTCCATGTACAAAACAATTAG- 1740 Query 1803 CAGAAACCAAATTTTTTCTTCAA-A-A-GAA-AAT---TTCTTTGAGTTTCAATC 1850 |||||||||| ||||||||| || | | ||| || ||| ||||||||||||| Sbjct 1741 CAGAAACCAATTTTTTTCTTAAAGATAAGAAGAAAAAATTCATTGAGTTTCAATC 1795 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69476606880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5