BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22310.2
Length=1850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472471 jgi|Araly1|472471|fgenesh2_kg.1__2425__AT1G22310.2 2281 0.0
> Ahg472471 jgi|Araly1|472471|fgenesh2_kg.1__2425__AT1G22310.2
Length=1795
Score = 2281 bits (1235), Expect = 0.0
Identities = 1664/1855 (90%), Gaps = 93/1855 (5%)
Strand=Plus/Plus
Query 29 GAAGTTATCGGAATTTGCATCTTTTTGATTCCGCCGTTTTGCGTCTGACGTGTTCACGGC 88
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GAAGTTATCGGAATTTGCATCTTTTTGATTCCGCCG-TTTGCGTCTGACGTGTTCACGGC 59
Query 89 GGCAACCTCCATGGACGACGGTGACCTCGGTAACAACCACCATAACTTCCTCGGTGGAGC 148
|||||||||||||||| ||||||||||||| ||||||||||| ||||||| || ||| ||
Sbjct 60 GGCAACCTCCATGGACAACGGTGACCTCGGAAACAACCACCACAACTTCCACGATGGTGC 119
Query 149 TGGTAATCGTTTATCAGCCGAATCTTTGCCGTTAATCGATACGCGTCTTTTGTCCCAGTC 208
|| ||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 120 TGATAACCGTTTATCAGCCGAATCTTTGCCGTTAATCGATATGCGTCTCTTATCCCAGTC 179
Query 209 AGAACTTCGCGctctctctcagtgttcttctctatctccatcttcttcagcgtctctcGC 268
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAACTTCGCGCTCTCTCTCACTGTTCTTCTCTATCTCCATCTTCTTCAGCGTCTCTCGC 239
Query 269 CGCTTCCGCCGGTGGAGACGACGATTTGACACCAAAGATCGATCGCTCCGTTTTCAATGA 328
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TACTTCCGCCGGTGGAGACGACGATTTGACACCAAAGATCGATCGCTCCGTCTTCAATGA 299
Query 329 GTCCGCTGGTAGCCGGAAACAGACATTTCTCCGTCTCCGCCTTGCGCGCCACCCTCAACC 388
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GTCCGCTGGGAGCCGGAAACAGACATTTCTCCGTCTCCGCCTTGCGCGTCACCCTCAACC 359
Query 389 ACCGGAGGAACCTCCTTCGCCGCAACGTCAGAGAGACGATTCTTCCCGTGAAGAACAAAC 448
| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 360 AACGGAGAAACCTCCTTCGCCGCAACGTCAAAGAGACGATTCTTCCCTTGAAGAACAAAC 419
Query 449 GCAAGTCGCGTCGCTTCTCAGATCTCTGTTCAATGTCGATTCGAATCAGAGTAAAGAGGA 508
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 GCAAGTCGCGTCGCTTCTCAGATCTCTGTTCAATGTCGATTCGATTCAGAGTAAAGAGGA 479
Query 509 AGAAGACGAAGGAGAGGAAG-AGCTCGAAGATAACGAAGGTCAGATCCATTATAACAGCT 567
|||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||
Sbjct 480 AGAAGACGAAGGAGAGGAAGAAG-TCGAGGAAAACGAAGGTCAGATCCATTATAACAGCT 538
Query 568 ATGTTTATCAGAGACCTAATCTTGATTCGATTCAGAACGTTCTGATTCAGGGAACCTCCG 627
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 539 ATGTTTATCAGAGACCGAATCTTGATTCGGTTCAGAACGTTCTGATTCAGGGAACCTCCG 598
Query 628 GGAATAAAATAAAGAGGAAGCGTGGACGGCCGAGGAAGATTCGGAACCCTAGC---GAAG 684
||||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 599 GGAATGAAATCAAGAGGAAGCGAGGACGGCCGAGGAAGATTCGGAACCCTAGCGAGGAAG 658
Query 685 AGAATGAGGTTTTGGATTTAACTGGTGAAGCATCTACGTATGTGTTTGTAGATAAAACTA 744
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 AGACGGAGGTTTTGGATTTAACAGGTGAAGCATCTACGTATGTGTTTGTAGATAAAACTA 718
Query 745 GTAGCAATTTGGGAATGGTGAGTAGAGTTGGTAGTTCAGGAATCTCCCTGGATTCAAATT 804
|||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 719 GTAGCAATTTGGGAATAGAGAGTAGATTTGGTAGTTCAGGAATCTCCATGGATTCAAATT 778
Query 805 CAGTgaagagaaagagaggtcgtcctccaaagaataaggaagagataatgaacctagaga 864
| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 779 CTGTGAAGAGAAAGAGAGGTCGTCCTCCAAAGAATAAGGAAGAGATAATGAACTTGGAGA 838
Query 865 agagagaCAGTGCAATTGTGAATAT-TTCTGCGTTTGATAAGGAAGAGTTAGTAGTGAAC 923
| |||||||||||||||| |||| | |||||| || |||||||||||| | |||||||
Sbjct 839 ACAGAGACAGTGCAATTGGGAAT-TCTTCTGCATTGGATAAGGAAGAG-T--TAGTGAAA 894
Query 924 TTGGAGAACAGAGAAGGTACAATTGTGGATCTCTCTGCATTGGCTAGTGTTTCAGAGGAT 983
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 895 TTGGAGAACAGAGAAGGTGCAATTGTGGATCTTTCTGCATTGGCTAGTGTTTCAGAGGAT 954
Query 984 CCATACGAAGAGGAGCTGAGGAGGATCACCGTTGGGTTGAAGACAAAGGAAGAGATCTTA 1043
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 955 CCATATGAAGAGGATCTGAGGAGGATCACTGTTGGGTTGAAGACAAAGGAAGAGATCTTA 1014
Query 1044 GGTTTCTTGGAACAA-TTGAATGGTGAATGGGTGAATATAGGGAAGAAGAAGAAAGTTGT 1102
| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GTTTTCTTGGAACAACTT-AATGGTGAATGGGTGAATATAGGGAAGAAGAAGAAAGTTGT 1073
Query 1103 GA-ATGCTTGTGATTATGGAGGATACTTGCCTAGAGGATGGAGACTTATGCTCTACATCA 1161
|| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 1074 GAGA-GCTTGTGATTATGGAGGATACTTGCCCAGAGGATGGAAACTTATGCTCTACATAA 1132
Query 1162 AAAGGAAAGGTAGCAATTTGTTGCTGGCTTGTCGCAGATACATAAGCCCTGATGGGCAAC 1221
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AAAAGAAAGGTAGCAATTTGTTGCTGGCTTGTCGCAGATACATAAGCCCTGATGGGCAAC 1192
Query 1222 AGTTTGAAACCTGCAAGGAAGTCTCCACATATCTACGATC-ACTTCTTGAATCCCCAAGC 1280
|||||||||||||||| ||||||||||||||||| ||||| | | ||||| ||||| |||
Sbjct 1193 AGTTTGAAACCTGCAACGAAGTCTCCACATATCTGCGATCTA-TCCTTGAGTCCCCGAGC 1251
Query 1281 AAGAACCAACATTATTACTTGCAATCTGACAACAAGACTCTAGGACAACAACCAGTGATA 1340
||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| | |
Sbjct 1252 AAGAACCGACACTATTACTTGCAATCTGATAACAAGACTCTAGGACAACAGCCAGTAACA 1311
Query 1341 GCTAACGAATCTTTACTAGGTAACTCTGATTCCATGGACT--C-TGA---G-AC----AA 1389
|||||||| |||| ||||||||||||| |||||||||||| | || | || ||
Sbjct 1312 GCTAACGATTCTTCACTAGGTAACTCTAATTCCATGGACTTGCCTGTTCCGGACTCTGAA 1371
Query 1390 ----TGCAGTACCTTGAGAGTGGAAGAACCAGCAGTGAGGTGTTTGAGGAAGCAAAAGCC 1445
|||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1372 AAAATGCAGTACCTTGAGAGTGGAAGAACCGGCAGTGAGGTGTTTGAGGAAGCGAA---- 1427
Query 1446 GTAGAGAATGGCAATGAAGCAGATCGAGTGAAAACCAGTCTGATGCAGAAAGATGATAAT 1505
| | | || | |||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 1428 -T-G-G--TG--A-TGAAGCAGATGGAGTGAAAACCAGTCTGGTGGAGAAAGATGATAAT 1479
Query 1506 GCAGATTTTCTGAATGGAGTTGAGGACAACGACGATGATATGAAGAAAAGAGATGGTAAC 1565
|| |||||||||||||||| | ||| ||||| || | |||||||||||||||||||
Sbjct 1480 GCTGATTTTCTGAATGGAG---ACGACCACGACCAT-AC--GAAGAAAAGAGATGGTAAC 1533
Query 1566 ATGGAGAATTTGGC-GACTCTATCGAATTCAGAAATGACGAAAAGCCTACCGACAACGAC 1624
|||||||||||||| | |||||||||| || ||| ||| | | | ||||
Sbjct 1534 ATGGAGAATTTGGCAG-CTCTATCGAA---AGCCATGTCGA------T---G-C--CGAC 1577
Query 1625 TAATGAGCTTCAACAGTATTTCAGCTCACAAATCAACCGAGTTCAGTGACCATTTCTTTT 1684
| ||||||||||||||||||||| |||||||||| || |||||||||||||| ||| |||
Sbjct 1578 TGATGAGCTTCAACAGTATTTCAACTCACAAATCCACTGAGTTCAGTGACCAGTTCCTTT 1637
Query 1685 ACCTGGAACAAATTGTTTTCTCATTCTAGTTCAGATTTTATATTTTATGCAAACTAAAAG 1744
|||||||||||| |||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 1638 ACCTGGAACAAAATGTTTTCTCATTCTAGTTCAGATTTTATGTTTCATGCA---TA---G 1691
Query 1745 CGTGTTGTAGCTAACTACAGGATATAGAATTTGAAAGGG-CCATGTACAAAACATTT-GA 1802
| | | ||| | || | ||||||||||||||| || |||||||||||||| || |
Sbjct 1692 C-TA----A-CTA-C-AC-G-ATATAGAATTTGAAAAGGTCCATGTACAAAACAATTAG- 1740
Query 1803 CAGAAACCAAATTTTTTCTTCAA-A-A-GAA-AAT---TTCTTTGAGTTTCAATC 1850
|||||||||| ||||||||| || | | ||| || ||| |||||||||||||
Sbjct 1741 CAGAAACCAATTTTTTTCTTAAAGATAAGAAGAAAAAATTCATTGAGTTTCAATC 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69476606880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5