BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22330.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313119 jgi|Araly1|313119|fgenesh1_pm.C_scaffold_1001899 1363 0.0
Ahg476993 jgi|Araly1|476993|fgenesh2_kg.2__2123__AT1G78260.1 588 4e-167
> Ahg313119 jgi|Araly1|313119|fgenesh1_pm.C_scaffold_1001899
Length=876
Score = 1363 bits (738), Expect = 0.0
Identities = 834/880 (95%), Gaps = 8/880 (1%)
Strand=Plus/Plus
Query 152 ATGTCTAATACAAGCTATTACCGATCACCGTTCGGAGACACGACTCACACCAAAGTGTTT 211
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1 ATGTCTAATACAAGCTATTACCGATCACCGTTCGGTGACACGACCCACACCAAAGTGTTC 60
Query 212 GTAGGAGGTTTAGCATGGGAGACTCCCACCGATGAAATGCGCCGTTACTTTGATCAGTTC 271
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 61 GTTGGAGGTTTAGCATGGGAGACTCCGACCGATGAAATGCGCCGTTACTTCGATCAGTTC 120
Query 272 GGAGAGATTCTTGAAGCCGTCATCATTACCGATAAGGCTACCGGAAAATCTAAAGGCTAC 331
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 121 GGAGAGATTCTTGAAGCCGTCATCATTACCGATAAGACCACCGGAAAATCTAAAGGCTAT 180
Query 332 GGTTTTGTCACGTTTCGAGACTCGGATTCAGCGACGAGAGCCGTCGCTGATCCGAATCCG 391
|||||||||||||||||||| || || |||||||||||||| ||||||||||||||||||
Sbjct 181 GGTTTTGTCACGTTTCGAGAGTCCGACTCAGCGACGAGAGCTGTCGCTGATCCGAATCCG 240
Query 392 GTGATCGATGGACGAAAGGCAAATTGCAATATTGCGTCTTTTGGACGGCCCCGACCATCG 451
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTGATCGATGGACGAAAGGCGAATTGCAATATTGCGTCTTTTGGACGGCCCCGACCATCG 300
Query 452 ACGCCTCGAGGACGAGGACAAGGAGGAAGCCCTAGTCAGTATCAAGGCGGAGGACAATCA 511
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 301 ACGCCTCGAGGACGAGGACAAGGAGGAAGCCCGAGTCAATATCAAGGCGGAGGACAATCA 360
Query 512 AGCTATACCGGAATGGCTGCTCCGGTGCAGCAGGCTGCGGCTGCCCAGCTCATGTATCCG 571
||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 AGCTACACCGGAATGGCAGCTCCGGTGCAGCAGGCTGCGACTGCCCAGCTCATGTATCCG 420
Query 572 TCATACGGGTACACCTACAATTCTGAATATGGGTACCACCAAGCCCTATACAACGCACAG 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCATACGGGTACACCTACAATTCTGAATATGGGTACCACCAAGCCCTATACAACGCACAG 480
Query 632 CTCCAACAGGCACAATACTATCAACAGCAAATGTACGGAGGAGGAGGAG---CAACATCA 688
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 CTCCAACAGGCACAATACTATCAACAGCAAATGTACGGAGGAGGAGGAGGAGCAACATCA 540
Query 689 CCATCATCATCCAACATCATGCCTTCCCCTTATTACTACCTCCAAGCTCCAAGCCCTAGA 748
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 CCATCATCATCCAACATCATGCCTTCCCCTTATTACTACCTTCAAGCTCCAAGCCCTAGA 600
Query 749 CCATATCTtcatcatcaacaacattatcaatatcaccatcatcagcagcagcagcaacaa 808
||||||| ||||||||||||||| | || ||||| ||||||| || ||||||||||||
Sbjct 601 CCATATCCTCATCATCAACAACA--A-CATTATCAGTATCATCATCATCAGCAGCAACAA 657
Query 809 caacaacaacGTTTACCTTCTGCTTCATCTTACCTAATTTACCCATCCAATGTCGAGGCT 868
|| ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 658 CAGCAACAACGTTTACCTTCTGCTTCTTCTTACCTAATTTACCCATCCAATATTGAGGCT 717
Query 869 CCTAC-TCCATCTAATGTCCCTACTTCCCAAGGGCCACTATCTTCTTCCACTGAATCACA 927
||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CCTACGTCC-TCTAATGCCCCTACTTCCCAAGGGCCACTATCTTCTTCCACTGAATCACA 776
Query 928 CGCACCACAACAAGTATCAGAAGAAGGTGGAGAATTCGATCCAACGGATGCACCTGAAAG 987
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 777 CGCACCACAACAAGTATCAGAAGAAGGTGGAGAATTCGATGCAGCGGATGCACCTGAAAG 836
Query 988 TACGACTACGAACATCAGAGACTTAACGTCATCTTCTTGA 1027
||| || ||||||| ||||||||||||||| ||||| |||
Sbjct 837 TACAACCACGAACACCAGAGACTTAACGTCGTCTTCATGA 876
> Ahg476993 jgi|Araly1|476993|fgenesh2_kg.2__2123__AT1G78260.1
Length=1476
Score = 588 bits (318), Expect = 4e-167
Identities = 493/576 (86%), Gaps = 17/576 (3%)
Strand=Plus/Plus
Query 152 ATGTCT-AATACAAGCTATTACCGATCACCGTTCGGAGACACGACTCACACCAAAGTGTT 210
|||||| || || |||||||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 312 ATGTCTCAA-ACGAGCTATTATCGATCACCGTCCGGAGACACGACTTACACCAAAGTGTT 370
Query 211 TGTAGGAGGTTTAGCATGGGAGACTCCCACCGATGAAATGCGCCGTTACTTTGATCAGTT 270
|| ||||| ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||
Sbjct 371 CGTTGGAGGATTAGCATGGGAAACTCCTACCGACGAAATGCGTCGTTACTTCGATCAGTT 430
Query 271 CGGAGAGATTCTTGAAGCCGTCATCATTACCGATAAGG-CTACCGGAAAATCTAAAGGCT 329
|||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||
Sbjct 431 CGGAGAGATTCTTGAAGCCGTCATCATTACCGATAAAAAC-ACCGGCAAATCTAAAGGCT 489
Query 330 ACGGTTTTGTCACGTTTCGAGACTCGGATTCAGCGACGAGAGCCGTCGCTGATCCGAATC 389
| || || || |||||||| || |||||||||| |||||||||||||||||||| ||||
Sbjct 490 ATGGATTCGTGACGTTTCGGGAGGCGGATTCAGCCACGAGAGCCGTCGCTGATCCAAATC 549
Query 390 CGGTGATCGATGGACGAAAGGCAAATTGCAATATTGCGTCTTTTGGACGGCCCCGACCAT 449
|||||||||| ||| |||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct 550 CGGTGATCGACGGAAGAAAAGCCAATTGTAATATTGCGTCTTTTGGACGGCCTCGACCAT 609
Query 450 CGACGCCTCGAGGACGAGGACAAGGAGGAAGCCCTAGTCAGTATCAAGGCGGAGGACAAT 509
|| |||||||||| ||||||||| |||||| || |||||||| ||| | ||||||| ||
Sbjct 610 CGCCGCCTCGAGGTCGAGGACAAACAGGAAGTCCGAGTCAGTACCAAAGTGGAGGACCAT 669
Query 510 CAAGCTATACCGGAATGGCTGCTCCGGTGC-AGCAGGCTGCGGCTGCCCAGCTCATGTAT 568
|| | |||||||| |||||||| | ||| | | |||||| ||| ||||||||||||||
Sbjct 670 CAGGTTATACCGGGATGGCTGCACAACTGCCACC-GGCTGCAGCTCCCCAGCTCATGTAT 728
Query 569 CCGTCATACGGGTACACCTACAATTCTGA--A-TATGGGTACCACCAAGCCCTATACAAC 625
||||| |||||||||||||| || |||| | | ||||||||||||||| || ||||||
Sbjct 729 CCGTCCTACGGGTACACCTATAACCCTGATCAATTTGGGTACCACCAAGCACTGTACAAC 788
Query 626 GCACAGCTCCAACAGGCACAATACTATCAACAGCAA-ATGTA-CGG-A-GGAGGAGGAGC 681
||||| | ||||| |||||||||||||| |||||| | | | | | |||||||||||
Sbjct 789 ACACAGTTGCAACAAGCACAATACTATCAGCAGCAACA-GCAGCTTTATGGAGGAGGAGC 847
Query 682 AACATCACCATCATCATCC--AAC-ATCATGCCTTC 714
|||||||||||||||||| ||| |||||||||||
Sbjct 848 AACATCACCATCATCATCAGGAACTATCATGCCTTC 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5