BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22370.2 Length=1440 Score E Sequences producing significant alignments: (Bits) Value Ahg472478 jgi|Araly1|472478|fgenesh2_kg.1__2432__AT1G22370.2 1772 0.0 Ahg335478 jgi|Araly1|335478|fgenesh1_pg.C_scaffold_1002043 907 0.0 > Ahg472478 jgi|Araly1|472478|fgenesh2_kg.1__2432__AT1G22370.2 Length=1422 Score = 1772 bits (959), Expect = 0.0 Identities = 1303/1455 (90%), Gaps = 80/1455 (5%) Strand=Plus/Plus Query 1 ATGGCGTCTCATGCTGTTACAAGCGGACAAAAACCACACGTAGTTTGCATACCTTTCCCG 60 ||||| |||||||| ||| | |||||| |||||||||||||||||||| | |||||||| Sbjct 1 ATGGCATCTCATGCCGTTTCTAGCGGAAAAAAACCACACGTAGTTTGCGTCCCTTTCCCA 60 Query 61 GCTCAAGGCCACATCAATCCGATGCTCAAAGTGGCTAAACTCCTCTATGCCAGAGGCTTC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCTCAAGGCCACATCAATCCGATGCTCAAAGTGGCTAAACTCCTCTATGCCAGAGGCTTC 120 Query 121 CATGTTACCTTCGTCAACACTAACTACAACCATAACCGTCTCATCCGGTCACGTGGTCCC 180 ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 121 CATGTTACCTTTGTCAACACCAACTATAACCATAACCGTCTCATCCGGTCACGTGGTCCC 180 Query 181 AACTCCCTTGATGGGCTTCCTTCTTTTCGGTTCGAGTCCATCCCTGACGGTCTACCGGAG 240 ||| ||||||| ||||||| |||||| || || |||||||||||||||||||||||||| Sbjct 181 AACGCCCTTGACGGGCTTCATTCTTTCCGATTTGAGTCCATCCCTGACGGTCTACCGGA- 239 Query 241 GAA--AACAAGGACGTCATGCAGGATGTCCCTAC-CCTTTGTGAGTCCACCATGAAAAAC 297 || ||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 240 -AACCAACAAGGACGTCATGCAGGATGTCCCT-CTCCTTTGTGAGTCCACCATGAAAAAT 297 Query 298 TGTCTAGCTCCTTTCAAGGAGCTTCTCCGGCGGATCAACACCAC-A-AAGGATGTTCCTC 355 ||||||||||||||||||||||||||| |||||||||||||| | | || |||||||||| Sbjct 298 TGTCTAGCTCCTTTCAAGGAGCTTCTCTGGCGGATCAACACC-CGAGAA-GATGTTCCTC 355 Query 356 CGGTAAGCTGTATTGTATCCGACGGTGTGATGAGCTTTACTCTTGATGCTGCAGAGGAGC 415 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 356 CGGTGAGCTGTATTGTATCCGACGGTGTGATGAGCTTTACTCTTGATGCTGCGGAGGAGC 415 Query 416 TTGGAGTCCCGGATGTTCTTTTTTGGACACCAAGTGCTTGTGGCTTCTTGGCTTATCTAC 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TTGGAGTCCCGGATGTTCTTTTTTGGACACCAAGTGCTTGTGGCTTCTTGGCTTATCTAC 475 Query 476 ACTTCTATCGCTTCATCGAGAAGGGG----TTATCACCAAT-AAA-AGATGAAAGTT-CT 528 |||||||||||||||||||||||||| ||||||||| | ||| |||||| |||| | Sbjct 476 ACTTCTATCGCTTCATCGAGAAGGGGTTAATTATCACCACTAAAAGAGATGAGAGTTAC- 534 Query 529 TTGGACACAAAAATAAATTGGATACCATCGATGAAAAACCTAGGACTTAAAGACATCCCA 588 || |||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 535 TTAGACACAGAAATAGATTGGATACCATCGATGAGAAACCTAAGACTTAAAGACATCCCA 594 Query 589 AGCTTTATCCGTGCAACTAATACTGAAGACATAATGCTTAACTTTTTTGTCCATGAGGCT 648 ||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||| Sbjct 595 AGCTTTATCCGTGCAACTAATCCTGATGACATAATG----ACTTTTTTGCCCATGAGGCC 650 Query 649 GACCGAGCCAAACGCGCTTCCGCTATCATTCTCAACACATTCGATAGTCTTGAGCATGAT 708 |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 651 GACCGAGCCAAACGTGCTTCGGCTATCATTCTCAACACATTCGATAGTCTAGAGCATGA- 709 Query 709 GTCGTCCGTTCTATTCAATCTATCATACCTCAAGTGTACACTATTGGACCGCTTCATCTA 768 | | | | || ||||| | || |||| | || | ||| | | ||| | Sbjct 710 -T-G--C---C-ATCCAATC--T-AT---TCAA-TCTA-TC-ATT----C-C-TCA---A 743 Query 769 TTTGTGAATCGGGATATCGACGAGGAAAGTGACATCGGACAGATAGGAACGAATATGTGG 828 | |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 744 -GT-TGAATCAGGAGATCGACGAGGAAAGTGACATCGGACAGATGGGAACGAATATGTGG 801 Query 829 AGAGAGGAGATGGAGTGTTTGGATTGGCTTGATACTAAGTCTCCAAACAGTGTCGTTTAT 888 ||||| ||||||||||||||||||||||| |||||||||| |||||| || ||||||||| Sbjct 802 AGAGAAGAGATGGAGTGTTTGGATTGGCTCGATACTAAGTTTCCAAATAGCGTCGTTTAT 861 Query 889 GTTAATTTCGGTAGCATAACAGTGATGAGTGCGAAACAACTCGTGGAGTTTGCTTGGGGT 948 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 862 GTTAATTTCGGTAGTATAACAGTGATGAGTGCGAAACAACTCGTGGAGTTTGCTTGGGGT 921 Query 949 TTAGCAGCGACCAAAAAAGATTTTTTGTGGGTGATTAGGCCGGATTTAGTAGCCGGTGAT 1008 |||||||||||||| ||| |||| || | | |||| | | | || | Sbjct 922 TTAGCAGCGACCAAGAAATATTTA--GT-----A---G-CCGG-T---G-A-----TG-T 959 Query 1009 GTGCCAATGCTTCCGCCGGACTTTCTAATAGAGACGGCTAACCGAAGGATGCTAGCGAGT 1068 | |||||||||||||| | |||||| ||||||||||| |||||||||||||||| ||| Sbjct 960 G--CCAATGCTTCCGCCAAAGTTTCTATTAGAGACGGCTGACCGAAGGATGCTAGCAAGT 1017 Query 1069 TGGTGTCCTCAAGAAAAAGTTCTTTCTCATCCGGCAGTTGGAGGGTTCTTAACGCATAGT 1128 |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 1018 TGGTGTCCTCAAGAGAAAGTTCTTTCTCATCCGGCAATCGGAGGGTTCTTAACGCATAGT 1077 Query 1129 GGATGGAATTCGACTTTGGAGAGTCTCTCCGGTGGAGTTCCAATGGTGTGTTGGCCGTTC 1188 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 GGATGGAACTCGACTTTGGAGAGTCTCTCCGGTGGAGTTCCAATGGTGTGTTGGCCGTTC 1137 Query 1189 TTTGCGGAACAGCAAACAAATTGTAAATATTGTTGTGATGAATGGGAAGTGGGGATGGAG 1248 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 TTTGCGGAGCAGCAAACCAATTGTAAATATTGTTGTGATGAATGGGAAGTGGGGATGGAG 1197 Query 1249 ATCGGTGGAGATGTGAGGAGGGAGGAGGTTGAGGAGTTGGTTAGAGAACTCATGGACGGA 1308 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1198 ATCGGTGGAGATGTGAGGAGGGAGGAGGTTGAGGAGTTGGTTAGAGAACTAATGGATGGA 1257 Query 1309 GACAAAGGAAAGAAAATGAG-GCAAAAGGCCGAAGAGTGGC-AGCGCTTGGCTGAGGAAG 1366 |||||||||||||||||||| | | ||| | |||||||||| | || ||||||||||||| Sbjct 1258 GACAAAGGAAAGAAAATGAGAG-AGAAGACGGAAGAGTGGCGA-CGATTGGCTGAGGAAG 1315 Query 1367 CGACGAAGCCTATTTATGGTTCGTCGGAACTAAATTTTCAGATGGTCGTTGACAAGGTTC 1426 ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 CGACGAAGCATATGTGTGGTTCGTCGGAACTAAATTTTCAGATGGTCGTTGACAAGGTTC 1375 Query 1427 TTTTAGGGG-AGTAG 1440 ||||||||| ||||| Sbjct 1376 TTTTAGGGGGAGTAG 1390 > Ahg335478 jgi|Araly1|335478|fgenesh1_pg.C_scaffold_1002043 Length=1467 Score = 907 bits (491), Expect = 0.0 Identities = 1121/1415 (79%), Gaps = 84/1415 (6%) Strand=Plus/Plus Query 30 AAAACCACACGTAGTTTGCATACCTTTCCCGGCTCAAGGCCACATCAATCCGATGCTCAA 89 ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| || Sbjct 30 AAAACCACACGTAGTTTGCGTGCCTTACCCGGCTCAAGGCCACATCAATCCGATGCTGAA 89 Query 90 AGTGGCTAAACTCCTCTATGCCAGAGGCTTCCATGTTACCTTCGTCAACACTAACTACAA 149 |||||||||||| || || || | |||||| |||| |||||||||||||| |||||| Sbjct 90 AGTGGCTAAACTTCTTTACGCTAAAGGCTTTTATGTCACCTTCGTCAACACCGTCTACAA 149 Query 150 CCATAACCGTCTCATCCGGTCACGTGGTCCCAACTCCCTTGATGGGCTTCCTTCTTTTCG 209 ||| ||||||||| | ||||| ||||| |||||| | || || ||||| | || || || Sbjct 150 CCACAACCGTCTCCTACGGTCCCGTGGCCCCAACGCGCTCGACGGGCTACGGTCATTCCG 209 Query 210 GTTCGAGTCCATCCCTGACGGTCTACCGGAG---GAAAAC-A-AGGACGTCATGCAGGAT 264 ||||||||||||||||||||| |||||||| || | | |||||| || ||| | Sbjct 210 GTTCGAGTCCATCCCTGACGGCCTACCGGAAACTGATGGCGATAGGACG-CA-GCAT-AC 266 Query 265 GTCCCTACCCTTTGTGAGTCCACCATGA-AAA-ACTGTCTAGCTCCTTTCAAGGAGCTTC 322 ||| |||| |||| | ||||| ||| ||| ||||||| ||||| ||||||||||||| Sbjct 267 -TCC-TACCGTTTGCGTGTCCAT--TGAGAAATACTGTCTCGCTCCGTTCAAGGAGCTTC 322 Query 323 TCCGGCGGATCAAC-ACCACAAAGGATGTTCCTCCGGTAAGCTGTATTGTATCCGACGGT 381 ||| |||||||||| | | | | ||||||||||| || |||||||||||||| |||||| Sbjct 323 TCCTGCGGATCAACGAT-AGAGATGATGTTCCTCCAGTGAGCTGTATTGTATCGGACGGT 381 Query 382 GTGATGAGCTTTACTCTTGATGCTGCAGAGGAGCTTGGAGTCCCGGATG-TTCTTTTTTG 440 |||||||| ||||||||||| || || |||||||| || ||||| || | || ||||||| Sbjct 382 GTGATGAGTTTTACTCTTGACGCAGCGGAGGAGCTCGGTGTCCCAGA-GATTATTTTTTG 440 Query 441 GACACCA-AGTGCTTGTGGCTTCTTGGCTTATCTACACTTCTATCGCTTCATCGAGAAGG 499 ||| | | ||||||||||| ||| || ||| ||||||||| |||| ||||||||||||| Sbjct 441 GAC-CAATAGTGCTTGTGGTTTCATGACTTTTCTACACTTTTATCTTTTCATCGAGAAGG 499 Query 500 GGT-TATCACCAATAAAAGATGAAAGTT-C-T-T-TG--GA-CA-CAA-A-A-A-TA--A 544 | | |||| || | ||||||||||||| | | | | || || | | | | | | | Sbjct 500 G-TCTATCTCCTTTTAAAGATGAAAGTTACATGTCTAAAGAGCATCTAGACACAGTTGTA 558 Query 545 -ATTGGATACCATCGATGAAAAACCT-AGGACTTAAAG-ACATCCCAAGCTTTATCCGTG 601 ||||||||||||||||||| || || ||| |||||| ||||||| |||| |||||| Sbjct 559 GATTGGATACCATCGATGAAGAATCTTAGG--TTAAAGGACATCCCTAGCTACATCCGTA 616 Query 602 CAACTAATACTGA-AGACATAATGCTTAACTTTTTTG-TCC-ATGAGG-CTGACCGAGCC 657 | || ||| |||| | |||||||||| || ||| | | | | |||| | || ||| || Sbjct 617 CCACAAATCCTGACA-ACATAATGCTAAA-TTTCCTCATTCGA-GAGGTC-GAGCGATCC 672 Query 658 AAACGCGCTTCCGCTATCATTCTCAACACATTCGAT-AGTCTTGAGCATGATGTCGTCC- 715 ||||| || ||||||||||||||||| || ||| | || ||||||||||| ||| Sbjct 673 AAACGGGCCGGTGCTATCATTCTCAACACGTTTGATGAA-CTCGAGCATGATGTTATCCA 731 Query 716 GTTCTATTCAATCTA-TCATACCTCAAGTGTACACTATTGGACCGCTTCATCTATTTGTG 774 || |||| ||||||| || |||||| || || | ||||||||||||||||| ||||| Sbjct 732 GT-CTATGCAATCTACTC-TACCTCCGGTTTATTCGATTGGACCGCTTCATCTCCTTGTG 789 Query 775 AATCG-GGATATCGACGAGGAAAGTGACATCGGACAGATAGGAACGAATATGTGGAGAGA 833 || | ||| ||||| || | ||||| || |||| ||| ||| ||| |||||||||| Sbjct 790 AAG-GAGGAAATCGATGAAGCTAGTGAAATAGGACGGATGGGATTAAATTTGTGGAGAGA 848 Query 834 GGAGATGGAGTGTTTGGATTGGCTTGATACTAAGTCTCCAAACAGTGT-CGTTTATGTTA 892 ||||| || |||||||||||||| |||||||| ||||||| || || | ||| ||||| Sbjct 849 GGAGACAGAATGTTTGGATTGGCTCGATACTAAAACTCCAAATAGCGTTCTTTT-TGTTA 907 Query 893 A-TTTCGG-TAGCATAACAGTGATGAGTGCGAAACAACTCGTGGAGTTTGCTTGGGGTTT 950 | ||| || | ||||||| ||| ||||||| |||||||| | ||||||||||||||||| Sbjct 908 ACTTT-GGAT-GCATAACGGTGTTGAGTGCAAAACAACTTGAAGAGTTTGCTTGGGGTTT 965 Query 951 AGCAGCGACCAAAAAAGATTTTTTGTGGGTGATTAGGCCGGATTTAGTAGCCGGTGATGT 1010 || || | |||| ||||||||||| || | || ||||||| | ||| || | Sbjct 966 GGCGGCAAGTGGGAAAGCGTTTTTGTGGGTTATCCGACCTAATTTAGTGGTCGGAGA-G- 1023 Query 1011 GCCAA--TG---CTTCCGCCGGACTTTCTAATAGAGACGGCTA-ACCGAAGGATGCTAGC 1064 || | || |||||||| || ||| ||| ||||| || |||| || ||| ||| Sbjct 1024 GCGATGGTGGTTCTTCCGCCAGAGTTTTTAACGGAGACAA-TAGACCGGAGAATGTTAGT 1082 Query 1065 GAGTTGGTGTCCTCAAGAAAAAGTTCTTTCTCATCCGGCAGTT-GGAGGGTTCTTAACGC 1123 ||||||||||||||| || |||||||||||||||||||| | | ||||||||||| || | Sbjct 1083 GAGTTGGTGTCCTCAGGAGAAAGTTCTTTCTCATCCGGC-GATCGGAGGGTTCTTGACAC 1141 Query 1124 ATAGTGGATGGAATTCGACTTTGGAGAGTCTCTCCGGTGGAGTTCCAATGGTGTGTTGGC 1183 || | || |||||||| || |||||||||||||||||||| ||||||||| | ||||||| Sbjct 1142 ATTGCGGGTGGAATTCAACGTTGGAGAGTCTCTCCGGTGGTGTTCCAATGATATGTTGGC 1201 Query 1184 CGT-TCTTTGCGGAACAGCAAACAAATTGTAAATATTGTTGTGATGAATGGGAAGTGGGG 1242 ||| | ||| ||||||| | || |||||||| | |||||||||||| |||| |||||| Sbjct 1202 CGTGTTTTT-CGGAACAACCGACGAATTGTAAGTTTTGTTGTGATGAGTGGGGAGTGGGT 1260 Query 1243 ATGGAGATCGGTGGAGATGTGAGGAGGGAGGAGGTTGAGGA-GTTGGTTAGAGAACTCAT 1301 || ||||||||| ||||||||| ||| |||||||| ||| | | |||||||||| || || Sbjct 1261 ATAGAGATCGGTAGAGATGTGAAGAGAGAGGAGGTCGAG-ACGGTGGTTAGAGAGCTTAT 1319 Query 1302 GGACGGAGACAAAGGAAAGAAAA-TGAG-GCAAAAGGCCGAAGAGTGGCAGCGCTTGGCT 1359 ||| ||||| || ||||| |||| |||| | ||||||| |||||||||||||| ||||| Sbjct 1320 GGATGGAGAGAAGGGAAA-AAAACTGAGAG-AAAAGGCGGAAGAGTGGCAGCGATTGGCC 1377 Query 1360 GAGGAAGCGACGAAGCCTATT-TATGGTTCGTCGG 1393 |||||||||||||||| || | ||||||||||| Sbjct 1378 GAGGAAGCGACGAAGCATAAACT-TGGTTCGTCGG 1411 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53859606430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5