BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22370.2
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472478 jgi|Araly1|472478|fgenesh2_kg.1__2432__AT1G22370.2 1772 0.0
Ahg335478 jgi|Araly1|335478|fgenesh1_pg.C_scaffold_1002043 907 0.0
> Ahg472478 jgi|Araly1|472478|fgenesh2_kg.1__2432__AT1G22370.2
Length=1422
Score = 1772 bits (959), Expect = 0.0
Identities = 1303/1455 (90%), Gaps = 80/1455 (5%)
Strand=Plus/Plus
Query 1 ATGGCGTCTCATGCTGTTACAAGCGGACAAAAACCACACGTAGTTTGCATACCTTTCCCG 60
||||| |||||||| ||| | |||||| |||||||||||||||||||| | ||||||||
Sbjct 1 ATGGCATCTCATGCCGTTTCTAGCGGAAAAAAACCACACGTAGTTTGCGTCCCTTTCCCA 60
Query 61 GCTCAAGGCCACATCAATCCGATGCTCAAAGTGGCTAAACTCCTCTATGCCAGAGGCTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTCAAGGCCACATCAATCCGATGCTCAAAGTGGCTAAACTCCTCTATGCCAGAGGCTTC 120
Query 121 CATGTTACCTTCGTCAACACTAACTACAACCATAACCGTCTCATCCGGTCACGTGGTCCC 180
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CATGTTACCTTTGTCAACACCAACTATAACCATAACCGTCTCATCCGGTCACGTGGTCCC 180
Query 181 AACTCCCTTGATGGGCTTCCTTCTTTTCGGTTCGAGTCCATCCCTGACGGTCTACCGGAG 240
||| ||||||| ||||||| |||||| || || ||||||||||||||||||||||||||
Sbjct 181 AACGCCCTTGACGGGCTTCATTCTTTCCGATTTGAGTCCATCCCTGACGGTCTACCGGA- 239
Query 241 GAA--AACAAGGACGTCATGCAGGATGTCCCTAC-CCTTTGTGAGTCCACCATGAAAAAC 297
|| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 240 -AACCAACAAGGACGTCATGCAGGATGTCCCT-CTCCTTTGTGAGTCCACCATGAAAAAT 297
Query 298 TGTCTAGCTCCTTTCAAGGAGCTTCTCCGGCGGATCAACACCAC-A-AAGGATGTTCCTC 355
||||||||||||||||||||||||||| |||||||||||||| | | || ||||||||||
Sbjct 298 TGTCTAGCTCCTTTCAAGGAGCTTCTCTGGCGGATCAACACC-CGAGAA-GATGTTCCTC 355
Query 356 CGGTAAGCTGTATTGTATCCGACGGTGTGATGAGCTTTACTCTTGATGCTGCAGAGGAGC 415
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 356 CGGTGAGCTGTATTGTATCCGACGGTGTGATGAGCTTTACTCTTGATGCTGCGGAGGAGC 415
Query 416 TTGGAGTCCCGGATGTTCTTTTTTGGACACCAAGTGCTTGTGGCTTCTTGGCTTATCTAC 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTGGAGTCCCGGATGTTCTTTTTTGGACACCAAGTGCTTGTGGCTTCTTGGCTTATCTAC 475
Query 476 ACTTCTATCGCTTCATCGAGAAGGGG----TTATCACCAAT-AAA-AGATGAAAGTT-CT 528
|||||||||||||||||||||||||| ||||||||| | ||| |||||| |||| |
Sbjct 476 ACTTCTATCGCTTCATCGAGAAGGGGTTAATTATCACCACTAAAAGAGATGAGAGTTAC- 534
Query 529 TTGGACACAAAAATAAATTGGATACCATCGATGAAAAACCTAGGACTTAAAGACATCCCA 588
|| |||||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 535 TTAGACACAGAAATAGATTGGATACCATCGATGAGAAACCTAAGACTTAAAGACATCCCA 594
Query 589 AGCTTTATCCGTGCAACTAATACTGAAGACATAATGCTTAACTTTTTTGTCCATGAGGCT 648
||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||
Sbjct 595 AGCTTTATCCGTGCAACTAATCCTGATGACATAATG----ACTTTTTTGCCCATGAGGCC 650
Query 649 GACCGAGCCAAACGCGCTTCCGCTATCATTCTCAACACATTCGATAGTCTTGAGCATGAT 708
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 651 GACCGAGCCAAACGTGCTTCGGCTATCATTCTCAACACATTCGATAGTCTAGAGCATGA- 709
Query 709 GTCGTCCGTTCTATTCAATCTATCATACCTCAAGTGTACACTATTGGACCGCTTCATCTA 768
| | | | || ||||| | || |||| | || | ||| | | ||| |
Sbjct 710 -T-G--C---C-ATCCAATC--T-AT---TCAA-TCTA-TC-ATT----C-C-TCA---A 743
Query 769 TTTGTGAATCGGGATATCGACGAGGAAAGTGACATCGGACAGATAGGAACGAATATGTGG 828
| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 744 -GT-TGAATCAGGAGATCGACGAGGAAAGTGACATCGGACAGATGGGAACGAATATGTGG 801
Query 829 AGAGAGGAGATGGAGTGTTTGGATTGGCTTGATACTAAGTCTCCAAACAGTGTCGTTTAT 888
||||| ||||||||||||||||||||||| |||||||||| |||||| || |||||||||
Sbjct 802 AGAGAAGAGATGGAGTGTTTGGATTGGCTCGATACTAAGTTTCCAAATAGCGTCGTTTAT 861
Query 889 GTTAATTTCGGTAGCATAACAGTGATGAGTGCGAAACAACTCGTGGAGTTTGCTTGGGGT 948
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 GTTAATTTCGGTAGTATAACAGTGATGAGTGCGAAACAACTCGTGGAGTTTGCTTGGGGT 921
Query 949 TTAGCAGCGACCAAAAAAGATTTTTTGTGGGTGATTAGGCCGGATTTAGTAGCCGGTGAT 1008
|||||||||||||| ||| |||| || | | |||| | | | || |
Sbjct 922 TTAGCAGCGACCAAGAAATATTTA--GT-----A---G-CCGG-T---G-A-----TG-T 959
Query 1009 GTGCCAATGCTTCCGCCGGACTTTCTAATAGAGACGGCTAACCGAAGGATGCTAGCGAGT 1068
| |||||||||||||| | |||||| ||||||||||| |||||||||||||||| |||
Sbjct 960 G--CCAATGCTTCCGCCAAAGTTTCTATTAGAGACGGCTGACCGAAGGATGCTAGCAAGT 1017
Query 1069 TGGTGTCCTCAAGAAAAAGTTCTTTCTCATCCGGCAGTTGGAGGGTTCTTAACGCATAGT 1128
|||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1018 TGGTGTCCTCAAGAGAAAGTTCTTTCTCATCCGGCAATCGGAGGGTTCTTAACGCATAGT 1077
Query 1129 GGATGGAATTCGACTTTGGAGAGTCTCTCCGGTGGAGTTCCAATGGTGTGTTGGCCGTTC 1188
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGATGGAACTCGACTTTGGAGAGTCTCTCCGGTGGAGTTCCAATGGTGTGTTGGCCGTTC 1137
Query 1189 TTTGCGGAACAGCAAACAAATTGTAAATATTGTTGTGATGAATGGGAAGTGGGGATGGAG 1248
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTTGCGGAGCAGCAAACCAATTGTAAATATTGTTGTGATGAATGGGAAGTGGGGATGGAG 1197
Query 1249 ATCGGTGGAGATGTGAGGAGGGAGGAGGTTGAGGAGTTGGTTAGAGAACTCATGGACGGA 1308
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1198 ATCGGTGGAGATGTGAGGAGGGAGGAGGTTGAGGAGTTGGTTAGAGAACTAATGGATGGA 1257
Query 1309 GACAAAGGAAAGAAAATGAG-GCAAAAGGCCGAAGAGTGGC-AGCGCTTGGCTGAGGAAG 1366
|||||||||||||||||||| | | ||| | |||||||||| | || |||||||||||||
Sbjct 1258 GACAAAGGAAAGAAAATGAGAG-AGAAGACGGAAGAGTGGCGA-CGATTGGCTGAGGAAG 1315
Query 1367 CGACGAAGCCTATTTATGGTTCGTCGGAACTAAATTTTCAGATGGTCGTTGACAAGGTTC 1426
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CGACGAAGCATATGTGTGGTTCGTCGGAACTAAATTTTCAGATGGTCGTTGACAAGGTTC 1375
Query 1427 TTTTAGGGG-AGTAG 1440
||||||||| |||||
Sbjct 1376 TTTTAGGGGGAGTAG 1390
> Ahg335478 jgi|Araly1|335478|fgenesh1_pg.C_scaffold_1002043
Length=1467
Score = 907 bits (491), Expect = 0.0
Identities = 1121/1415 (79%), Gaps = 84/1415 (6%)
Strand=Plus/Plus
Query 30 AAAACCACACGTAGTTTGCATACCTTTCCCGGCTCAAGGCCACATCAATCCGATGCTCAA 89
||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||
Sbjct 30 AAAACCACACGTAGTTTGCGTGCCTTACCCGGCTCAAGGCCACATCAATCCGATGCTGAA 89
Query 90 AGTGGCTAAACTCCTCTATGCCAGAGGCTTCCATGTTACCTTCGTCAACACTAACTACAA 149
|||||||||||| || || || | |||||| |||| |||||||||||||| ||||||
Sbjct 90 AGTGGCTAAACTTCTTTACGCTAAAGGCTTTTATGTCACCTTCGTCAACACCGTCTACAA 149
Query 150 CCATAACCGTCTCATCCGGTCACGTGGTCCCAACTCCCTTGATGGGCTTCCTTCTTTTCG 209
||| ||||||||| | ||||| ||||| |||||| | || || ||||| | || || ||
Sbjct 150 CCACAACCGTCTCCTACGGTCCCGTGGCCCCAACGCGCTCGACGGGCTACGGTCATTCCG 209
Query 210 GTTCGAGTCCATCCCTGACGGTCTACCGGAG---GAAAAC-A-AGGACGTCATGCAGGAT 264
||||||||||||||||||||| |||||||| || | | |||||| || ||| |
Sbjct 210 GTTCGAGTCCATCCCTGACGGCCTACCGGAAACTGATGGCGATAGGACG-CA-GCAT-AC 266
Query 265 GTCCCTACCCTTTGTGAGTCCACCATGA-AAA-ACTGTCTAGCTCCTTTCAAGGAGCTTC 322
||| |||| |||| | ||||| ||| ||| ||||||| ||||| |||||||||||||
Sbjct 267 -TCC-TACCGTTTGCGTGTCCAT--TGAGAAATACTGTCTCGCTCCGTTCAAGGAGCTTC 322
Query 323 TCCGGCGGATCAAC-ACCACAAAGGATGTTCCTCCGGTAAGCTGTATTGTATCCGACGGT 381
||| |||||||||| | | | | ||||||||||| || |||||||||||||| ||||||
Sbjct 323 TCCTGCGGATCAACGAT-AGAGATGATGTTCCTCCAGTGAGCTGTATTGTATCGGACGGT 381
Query 382 GTGATGAGCTTTACTCTTGATGCTGCAGAGGAGCTTGGAGTCCCGGATG-TTCTTTTTTG 440
|||||||| ||||||||||| || || |||||||| || ||||| || | || |||||||
Sbjct 382 GTGATGAGTTTTACTCTTGACGCAGCGGAGGAGCTCGGTGTCCCAGA-GATTATTTTTTG 440
Query 441 GACACCA-AGTGCTTGTGGCTTCTTGGCTTATCTACACTTCTATCGCTTCATCGAGAAGG 499
||| | | ||||||||||| ||| || ||| ||||||||| |||| |||||||||||||
Sbjct 441 GAC-CAATAGTGCTTGTGGTTTCATGACTTTTCTACACTTTTATCTTTTCATCGAGAAGG 499
Query 500 GGT-TATCACCAATAAAAGATGAAAGTT-C-T-T-TG--GA-CA-CAA-A-A-A-TA--A 544
| | |||| || | ||||||||||||| | | | | || || | | | | | | |
Sbjct 500 G-TCTATCTCCTTTTAAAGATGAAAGTTACATGTCTAAAGAGCATCTAGACACAGTTGTA 558
Query 545 -ATTGGATACCATCGATGAAAAACCT-AGGACTTAAAG-ACATCCCAAGCTTTATCCGTG 601
||||||||||||||||||| || || ||| |||||| ||||||| |||| ||||||
Sbjct 559 GATTGGATACCATCGATGAAGAATCTTAGG--TTAAAGGACATCCCTAGCTACATCCGTA 616
Query 602 CAACTAATACTGA-AGACATAATGCTTAACTTTTTTG-TCC-ATGAGG-CTGACCGAGCC 657
| || ||| |||| | |||||||||| || ||| | | | | |||| | || ||| ||
Sbjct 617 CCACAAATCCTGACA-ACATAATGCTAAA-TTTCCTCATTCGA-GAGGTC-GAGCGATCC 672
Query 658 AAACGCGCTTCCGCTATCATTCTCAACACATTCGAT-AGTCTTGAGCATGATGTCGTCC- 715
||||| || ||||||||||||||||| || ||| | || ||||||||||| |||
Sbjct 673 AAACGGGCCGGTGCTATCATTCTCAACACGTTTGATGAA-CTCGAGCATGATGTTATCCA 731
Query 716 GTTCTATTCAATCTA-TCATACCTCAAGTGTACACTATTGGACCGCTTCATCTATTTGTG 774
|| |||| ||||||| || |||||| || || | ||||||||||||||||| |||||
Sbjct 732 GT-CTATGCAATCTACTC-TACCTCCGGTTTATTCGATTGGACCGCTTCATCTCCTTGTG 789
Query 775 AATCG-GGATATCGACGAGGAAAGTGACATCGGACAGATAGGAACGAATATGTGGAGAGA 833
|| | ||| ||||| || | ||||| || |||| ||| ||| ||| ||||||||||
Sbjct 790 AAG-GAGGAAATCGATGAAGCTAGTGAAATAGGACGGATGGGATTAAATTTGTGGAGAGA 848
Query 834 GGAGATGGAGTGTTTGGATTGGCTTGATACTAAGTCTCCAAACAGTGT-CGTTTATGTTA 892
||||| || |||||||||||||| |||||||| ||||||| || || | ||| |||||
Sbjct 849 GGAGACAGAATGTTTGGATTGGCTCGATACTAAAACTCCAAATAGCGTTCTTTT-TGTTA 907
Query 893 A-TTTCGG-TAGCATAACAGTGATGAGTGCGAAACAACTCGTGGAGTTTGCTTGGGGTTT 950
| ||| || | ||||||| ||| ||||||| |||||||| | |||||||||||||||||
Sbjct 908 ACTTT-GGAT-GCATAACGGTGTTGAGTGCAAAACAACTTGAAGAGTTTGCTTGGGGTTT 965
Query 951 AGCAGCGACCAAAAAAGATTTTTTGTGGGTGATTAGGCCGGATTTAGTAGCCGGTGATGT 1010
|| || | |||| ||||||||||| || | || ||||||| | ||| || |
Sbjct 966 GGCGGCAAGTGGGAAAGCGTTTTTGTGGGTTATCCGACCTAATTTAGTGGTCGGAGA-G- 1023
Query 1011 GCCAA--TG---CTTCCGCCGGACTTTCTAATAGAGACGGCTA-ACCGAAGGATGCTAGC 1064
|| | || |||||||| || ||| ||| ||||| || |||| || ||| |||
Sbjct 1024 GCGATGGTGGTTCTTCCGCCAGAGTTTTTAACGGAGACAA-TAGACCGGAGAATGTTAGT 1082
Query 1065 GAGTTGGTGTCCTCAAGAAAAAGTTCTTTCTCATCCGGCAGTT-GGAGGGTTCTTAACGC 1123
||||||||||||||| || |||||||||||||||||||| | | ||||||||||| || |
Sbjct 1083 GAGTTGGTGTCCTCAGGAGAAAGTTCTTTCTCATCCGGC-GATCGGAGGGTTCTTGACAC 1141
Query 1124 ATAGTGGATGGAATTCGACTTTGGAGAGTCTCTCCGGTGGAGTTCCAATGGTGTGTTGGC 1183
|| | || |||||||| || |||||||||||||||||||| ||||||||| | |||||||
Sbjct 1142 ATTGCGGGTGGAATTCAACGTTGGAGAGTCTCTCCGGTGGTGTTCCAATGATATGTTGGC 1201
Query 1184 CGT-TCTTTGCGGAACAGCAAACAAATTGTAAATATTGTTGTGATGAATGGGAAGTGGGG 1242
||| | ||| ||||||| | || |||||||| | |||||||||||| |||| ||||||
Sbjct 1202 CGTGTTTTT-CGGAACAACCGACGAATTGTAAGTTTTGTTGTGATGAGTGGGGAGTGGGT 1260
Query 1243 ATGGAGATCGGTGGAGATGTGAGGAGGGAGGAGGTTGAGGA-GTTGGTTAGAGAACTCAT 1301
|| ||||||||| ||||||||| ||| |||||||| ||| | | |||||||||| || ||
Sbjct 1261 ATAGAGATCGGTAGAGATGTGAAGAGAGAGGAGGTCGAG-ACGGTGGTTAGAGAGCTTAT 1319
Query 1302 GGACGGAGACAAAGGAAAGAAAA-TGAG-GCAAAAGGCCGAAGAGTGGCAGCGCTTGGCT 1359
||| ||||| || ||||| |||| |||| | ||||||| |||||||||||||| |||||
Sbjct 1320 GGATGGAGAGAAGGGAAA-AAAACTGAGAG-AAAAGGCGGAAGAGTGGCAGCGATTGGCC 1377
Query 1360 GAGGAAGCGACGAAGCCTATT-TATGGTTCGTCGG 1393
|||||||||||||||| || | |||||||||||
Sbjct 1378 GAGGAAGCGACGAAGCATAAACT-TGGTTCGTCGG 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5