BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22410.1
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472481 jgi|Araly1|472481|fgenesh2_kg.1__2435__AT1G22410.1 3033 0.0
Ahg491335 jgi|Araly1|491335|fgenesh2_kg.7__768__AT4G33510.1 802 0.0
> Ahg472481 jgi|Araly1|472481|fgenesh2_kg.1__2435__AT1G22410.1
Length=1858
Score = 3033 bits (1642), Expect = 0.0
Identities = 1793/1866 (96%), Gaps = 9/1866 (0%)
Strand=Plus/Plus
Query 1 CACACACATTTGTCGAAATCTTAACACCAATCCCAAATCAGAAAAATCAAAACTTTTTAT 60
||||||||||||||||||||| |||||||| ||||||| | ||||| |||||| ||| |
Sbjct 1 CACACACATTTGTCGAAATCTCAACACCAAACCCAAATTA-AAAAAACAAAAC--TTT-T 56
Query 61 TTTATTTTATCAAAATGGCGCTTATGAATGGAAGCATGAATCTATCATCGGTCAAATCAT 120
||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 57 TTT-TTTTATAAAAATGGCGCTTATGAATGGAACCATGAATCTATCATCGGTCAAATCAT 115
Query 121 CGATGATCAACCACCGTCAACCAAACTTCTCCTCCGCCGTCTCCAGACCCACTTCTTTCC 180
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 116 CGATGATCAACCACCGTCAACCAAACTTCTCCTCCGCCGTCGCAAGACCCACTTCTTTCC 175
Query 181 GGATCTCCGCCGTGCAAACCGACCCAAAAACACCAGCTGCTTCATCGGCGTCGGCGGCGA 240
||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 176 GGATCTCCGCCGTTCAAACCGACCCCAAAACGCCAGCTGCTTCATCGGCGGCGGCGGCGG 235
Query 241 CGACGACTCCGGCAACGTTGACGAAGCCCGTTGGAGTTAATGTGGGTAAAGGAAAATGGG 300
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 236 CGACGACTCCGGCAGCGTTGACGAAGACCGTTGGAGTTAATGTGGGTAAAGGAAAATGGG 295
Query 301 CACCAGAGAGTTGGAGGACGAAGAAAGCTTTACAGCAACCGGACTATCCAGATTTAGCTG 360
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 296 CACCAGAGAGTTGGAGGACGAAGAAAGCGTTACAACAACCGGAATATCCAGATTTAGCTG 355
Query 361 CGCTTGAAGCTGTGCTAGAGACGATCGAAGCTTTTCCTCCGATCGTGTTCGCCGGAGAAG 420
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 356 AGCTTGAAGCTGTGCTCGAGACCATCGAAGCTTTTCCTCCGATCGTGTTCGCCGGAGAAG 415
Query 421 CTAGATTGCTTGAGGAACGATTAGGACAAGCAGCGATGGGTGAAGCGTTTCTGTTACAAG 480
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTAGATTGCTTGAGGAGCGTTTAGGACAAGCAGCGATGGGTGAAGCGTTTCTGTTACAAG 475
Query 481 GAGGAGATTGTGCAGAGAGTTTCAAAGAGTTTAATGCGAATAACATTCGTGATACTTTCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GAGGAGATTGTGCAGAGAGTTTCAAAGAGTTTAATGCGAATAACATTCGTGATACTTTCA 535
Query 541 GGATTCTTCTTCAGATGGGTGCTGTGTTGATGTTCGGAGGTCAAGTCCCTGTTGTTAAGG 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 536 GGATTCTTCTTCAGATGGGTGCTGTTTTGATGTTCGGAGGTCAAGTCCCTGTTGTTAAGG 595
Query 601 TTGGGAGAATGGCGGGTCAATTTGCGAAACCAAGATCGGATTCGTTTGAGGAGAAAGATG 660
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 596 TTGGGAGAATGGCGGGTCAATTTGCTAAACCGAGATCGGATTCGTTTGAGGAGAAAGATG 655
Query 661 GAGTGAAATTGCCTAGTTACAGAGGAGATAACATTAATGGAGATGCGTTTGATTCGAAAT 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAGTGAAATTGCCGAGTTACAGAGGAGATAACATTAATGGAGATGCGTTTGATTCGAAAT 715
Query 721 CTAGGATTCCTGATCCACAGAGGATGATTAGAGCTTATTGTCAATCTGCAGCTACTTTGA 780
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 716 CTAGGATTCCTGATCCACAGAGGATGATTAGAGCATATTGTCAATCTGCAGCTACTTTGA 775
Query 781 ATCTTTTGAGAGCTTTTGCTACTGGTGGTTATGCTGCTATGCAGAGAGTTACTCAATGGA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 776 ATCTTTTGAGAGCTTTTGCTACTGGTGGTTATGCTGCTATGCAGAGAGTTACCCAATGGA 835
Query 841 ATCTTGATTTCACTGAACGTAGTGAGCAAGGAGACAGGTACCGTGAACTAGCTAACCGTG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATCTTGATTTCACTGAACGTAGTGAGCAAGGAGACAGGTACCGTGAACTAGCTAACCGTG 895
Query 901 TTGATGAAGCGCTTGGTTTCATGCACGCTGCTGGATTAACGCTCGATCATCCCATAATGC 960
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 896 TTGATGAAGCGCTCGGTTTCATGCACGCTGCTGGACTAACGCTCGATCATCCCATAATGC 955
Query 961 AAACAACCGACTTCTGGACTTCTCATGAATGTTTGCTCTTGCCTTATGAACAATCACTAA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAACAACCGACTTCTGGACTTCTCATGAATGTTTGCTCTTGCCTTATGAACAATCACTAA 1015
Query 1021 CAAGGCTTGACTCAACCTCTGGTCTCTACTACGATTGTTCTGCCCATATGATTTGGGTCG 1080
||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||||| |
Sbjct 1016 CAAGGCTAGACTCGACCTCTGGTCTCTACTATGACTGTTCTGCTCATATGATTTGGGTTG 1075
Query 1081 GTGAGCGAACCAGACAGCTAGATGGTGCCCATGTCGAGTTCTTAAGAGGTGTTGCTAATC 1140
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GTGAGAGAACCAGACAGCTCGATGGTGCCCATGTCGAGTTCTTAAGAGGTGTTGCTAATC 1135
Query 1141 CTCTTGGAATCAAGGTGAGTGATAAAATGGATCCAAAGGAGCTAGTGAAGTTGATTGAGA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CTCTTGGAATCAAGGTGAGTGATAAAATGGATCCAAAGGAGCTAGTGAAGTTGATTGAGA 1195
Query 1201 TCTTGAATGCTGACAATAAGCCTGGAAGGATTACAATAATCACAAGAATGGGAGCTGAGA 1260
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1196 TCTTGAATGCTGACAATAAGCCTGGAAGGATTACCATAATCACAAGAATGGGAGCTGAGA 1255
Query 1261 ATATGAGAGTGAAGCTTCCTCATTTGATCAGAGAAGTGCGACGTGCTGGACAGATTGTGA 1320
||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct 1256 ATATGAGAGTGAAGCTTCCGCATTTGATCAGAGCTGTGCGACGCGCTGGACAGATTGTGA 1315
Query 1321 CTTGGGTCAGTGATCCAATGCACGGAAACACCATTAAGGCTCCTTGTGGTCTCAAGACTC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CTTGGGTCAGTGATCCAATGCACGGAAACACCATTAAGGCTCCTTGTGGTCTCAAGACTC 1375
Query 1381 GTCCCTTTGACGCCATCTTGGCTGAAGTGAGAGCTTTCTTCGACGTGCACGAGCAAGAAG 1440
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1376 GTCCTTTTGACGCCATCTTGGCTGAAGTGAGAGCGTTCTTCGACGTGCACGAGCAAGAAG 1435
Query 1441 GTAGCCACCCCGGAGGAATTCACCTAGAAATGACTGGTCAGAACGTGACCGAGTGCATCG 1500
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1436 GTAGCCACCCAGGAGGAATTCACCTAGAAATGACCGGTCAGAACGTGACCGAGTGCATCG 1495
Query 1501 GTGGTTCACGCACAGTCACATTCGACGACTTGGGTTCACGTTACCACACGCACTGTGATC 1560
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1496 GTGGTTCACGCACAGTCACCTTCGATGACTTGGGTTCACGTTACCACACCCACTGTGATC 1555
Query 1561 CTCGCCTTAATGCTTCACAGTCTCTTGAGCTCTCCTTCATCATCGCCGAACGTCTTAGAA 1620
|||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1556 CTCGCCTTAACGCATCACAGTCTCTCGAGCTGTCCTTCATCATCGCCGAACGTCTTAGAA 1615
Query 1621 AGAGACGCATCAAGTCTCAAAAGGCTTTTGCCCTCTAATCAAATAAACATTG-CTTATAA 1679
|||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||
Sbjct 1616 AGAGACGCATCAAGTCTCAACAGGCTTTTGCTGTCTAATCAAATAAACATTGGCTTATAA 1675
Query 1680 TAATATCTATCTATATAAAtgtgtgtgtgtgtgAACTTAATACAATCTCATTTATCTTTG 1739
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1676 TAATATCTATCTACATAAATGTGTGTGTGTG--AACTTAATACAATCTCATTTATCTTTG 1733
Query 1740 ATTCAAATCTTGAGTCAAAAGAACGCTTAAGGTTTCTGTTTTAATGTTGTTAGTGAGTAT 1799
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1734 ATTCAAATCTTGTGTCAAAAGAACGCTTAAGGTTT-TGTTTTAATGTTGTTAGTGAGTAT 1792
Query 1800 TATTTCCATTTTGGATTTAATATAATCATGGATGGTTGGGTTTTATTTATGTTGTGAACA 1859
||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||
Sbjct 1793 TATTTCCATTTTGGACTTAATAAAATCATGGATGGTTGGATTTTATTAATGTTGTGAACA 1852
Query 1860 GTTTTG 1865
||||||
Sbjct 1853 GTTTTG 1858
> Ahg491335 jgi|Araly1|491335|fgenesh2_kg.7__768__AT4G33510.1
Length=1727
Score = 802 bits (434), Expect = 0.0
Identities = 992/1259 (79%), Gaps = 48/1259 (4%)
Strand=Plus/Plus
Query 391 CTTTTCCTCCGATCGTGTTCGCCGGAGAAGCTA-GATTGCTTGAGGA-ACGATTAGGACA 448
|||| ||||| || || ||||| || || || | || || ||||| | | || || ||
Sbjct 278 CTTTCCCTCCTATAGTTTTCGCTGGTGAGGCGAGGA-AACTAGAGGATAAGCTT-GGTCA 335
Query 449 AGCAGCGATGGGTGAAGCGTTTCTG-TTACAAGGAGGAGATTGTGCAGAGAGTTTCAAAG 507
||| || |||||| | || ||| || || ||||| || |||||||| ||||||||||| |
Sbjct 336 AGCGGCCATGGGTCAGGCCTTTATGCTT-CAAGGTGGTGATTGTGCTGAGAGTTTCAAGG 394
Query 508 AGTTTAATGCGAATAACATTCGTGATACTTTCAGGATTCTTCTTCAGATGGGTGCTGTGT 567
| ||||| || ||||||||| | ||||| |||||| |||||||||||||||||| ||| |
Sbjct 395 AATTTAACGCTAATAACATTAGAGATACCTTCAGGGTTCTTCTTCAGATGGGTGTTGT-T 453
Query 568 -TGATGTTCGGAGGTCAAG-TCCCTGTTGTTAAGGTTGGG-AGAATGGCGGGTCAATTTG 624
| |||||||| || | || | || ||| | |||| |||| |||||||| ||||| ||||
Sbjct 454 CTCATGTTCGGTGG-CCAGTTACCAGTTATCAAGG-TGGGAAGAATGGCTGGTCAGTTTG 511
Query 625 CGAAACCAAGATCGGATTCGTTTGAGGAGAAAGATGGAGTGAAATTGCCTAGTTACAGAG 684
| || || |||||||| | ||||||||||||||||| ||||| |||| ||||||||||
Sbjct 512 CCAAGCCGAGATCGGACCCATTTGAGGAGAAAGATGGTGTGAAGCTGCCGAGTTACAGAG 571
Query 685 GAGATAACATTAATGGAGATGCGTTTGATTCGAAATCTAGGATTCCTGATCCACAGAGGA 744
|||||||||| ||||| ||||| |||||| |||||| |||||||||||||| || ||||
Sbjct 572 GAGATAACATAAATGGTGATGCTTTTGATGAGAAATCCAGGATTCCTGATCCTCATAGGA 631
Query 745 TGATTAGAGCTTATTGTCAATCTGCAGCTACTTTGAATCTTTTGAGAGCTTTTGCTACTG 804
|| ||||||| || ||||||| ||||| |||||||| |||||||| ||||||||||
Sbjct 632 TGGTTAGAGCCTACACACAATCTGTGGCTACGTTGAATCTCTTGAGAGCATTTGCTACTG 691
Query 805 GTGGTTATGCTGCTATGCAGAGAGTTA-CTCAATGGAATCTTGATTTCACTGAACGTAGT 863
| |||||||| |||||||| ||||||| | || ||||||||||||||||| ||| ||||
Sbjct 692 GAGGTTATGCAGCTATGCAAAGAGTTAGC-CAGTGGAATCTTGATTTCACCCAACATAGT 750
Query 864 GAGCAAGGAGACAGGTACCGTGAACTAGCTAACCGTGTTGATGAAGCGC-TT-GGTTTCA 921
|| || || ||||||||||||||| | ||||| | ||||||| || || || || ||||
Sbjct 751 GAACAGGGTGACAGGTACCGTGAATTGGCTAATAGAGTTGATG-AG-GCTTTAGGATTCA 808
Query 922 TGCACGCTGCTGGA-TTAACGCTCG-ATCATCCCATAATGCA-AACAACCGACTTCTGGA 978
|| || |||||| ||| | | | | || ||||| ||| | || || || || ||||
Sbjct 809 TGGGTGCAGCTGGACTTACCAAT-GCA-CACCCCATCATG-ACTACTACTGAGTTTTGGA 865
Query 979 CTTCTCATGAATGTTTGCT-CTTGCCTTATGAACAATCACTAACAAG-GCTTGACTCAAC 1036
|||| ||||| |||||| | | |||||||||| ||| |||| ||||| | || || ||
Sbjct 866 CTTCCCATGAGTGTTTGTTAC-TGCCTTATGAGCAAGCACTCACAAGAG-AGGATTCCAC 923
Query 1037 CTCTGGTCTCTACTACGATTGTTCTGCCCATATGATTTGGGTCGGTGAGCGAAC-CAGAC 1095
||||| || ||||| ||||| ||||| || ||| ||||||| || |||||||| | | |
Sbjct 924 ATCTGGACTTTACTATGATTGCTCTGCGCACATGCTTTGGGTTGGAGAGCGAACTC-GCC 982
Query 1096 AGCTAGATGGTGCCCATGTCGAG-TTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAG 1154
| || |||||||||||||| ||| ||| | ||||| | ||||| || ||||||||||||
Sbjct 983 AACTCGATGGTGCCCATGTTGAGTTTC-TGAGAGGAATCGCTAACCCCCTTGGAATCAAG 1041
Query 1155 GTGAGTGATAAAATGGATCCAAAG-GAGCTAGTGAAGTTGATTGAGAT-CTTGAATGCTG 1212
|||||||||||||||| ||| || || || || | | |||| ||||| || || ||
Sbjct 1042 GTGAGTGATAAAATGG-TCCCTAGTGAACTGGTTAGGCTGATAGAGATACTA-AACCCTC 1099
Query 1213 ACAATAAGCCTGGAAGGATTACAATAATCACAAGAATGGGAGCTGAGAATATGAGAGTGA 1272
| || |||||||||||||||||| | || ||||||||||||||||||||| | || |
Sbjct 1100 AGAACAAGCCTGGAAGGATTACAGTTATTGTGAGAATGGGAGCTGAGAATATGCGGGTTA 1159
Query 1273 AGCTTCCTCATTTGATCAGAGAAGTGCGACGTGCTGGACAGATTGTGACTTGGGTCAGTG 1332
|||||||| |||||||||||| ||| ||| | || || ||||| ||||||||||| ||||
Sbjct 1160 AGCTTCCTAATTTGATCAGAGCAGTACGAGGAGCCGGTCAGATAGTGACTTGGGTTAGTG 1219
Query 1333 ATCCAATGCACGGAAACACCATTAAGGCTCCTTGTGGTCTCAAGACTCGTCCCTTT-GAC 1391
|||||||||| |||||||| || | ||||||| |||| || || |||||| | ||| ||
Sbjct 1220 ATCCAATGCATGGAAACACAATCATGGCTCCTGGTGGGCTAAAAACTCGTTC-TTTCGAT 1278
Query 1392 GCCATCTTGGCTGAAGTGAGAGCTTTCTTCGACGTGCACGAGCAAGAAGGTAGCCACCCC 1451
|| ||| ||| ||| ||||||| |||||||||||||| || |||||||| || |||
Sbjct 1279 GCAATCAGGGCGGAATTGAGAGCGTTCTTCGACGTGCATGATCAAGAAGGGAGTTTCCCT 1338
Query 1452 GGAGGAATTCACCTAGAAATGACTGGTCAGAACGTGACCGAGTGCATCGGTGGTTCACGC 1511
|| || |||| |||||||||| || || |||||||| || ||| | || || ||||||
Sbjct 1339 GGTGGGGTTCATTTAGAAATGACAGGGCAAAACGTGACAGAATGCGTTGGAGGGTCACGC 1398
Query 1512 AC-AGTCACATT-CGACGA-CTTGGGTTCACGTTACCACACGCACTGTGATCCTCGCCTT 1568
|| | |||| || | |||| || | | |||| |||||||| || ||||| || | ||
Sbjct 1399 ACCA-TCAC-TTACAACGATCTAAGCT-CACGCTACCACACTCATTGTGACCCAAGGCTC 1455
Query 1569 AATGCTTCACAGTCTCTTGAGCTCTCC-TTCATCATCGCCGAACGTCTTA-GAAAGAGA 1625
|| || || |||||||| ||||| | | |||||||| || || ||||| | ||||||||
Sbjct 1456 AACGCCTCTCAGTCTCTGGAGCT-TGCATTCATCATTGCAGAGCGTCT-ACGAAAGAGA 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72104833785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5