BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22420.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921258 jgi|Araly1|921258|scaffold_102539.1 597 7e-170
> Ahg921258 jgi|Araly1|921258|scaffold_102539.1
Length=1406
Score = 597 bits (323), Expect = 7e-170
Identities = 606/733 (83%), Gaps = 57/733 (8%)
Strand=Plus/Plus
Query 400 GAAGACGATATGAACCAGGAACAGTTACATGGGTCTATGTTGCCTCCCCTGTTCGTAAAT 459
||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||| ||||
Sbjct 420 GAAGACGATATGAACCATGAACAGTTGCATGGGTCTACGTTGCCTCCTCTGTTCGCAAAT 479
Query 460 GGTGATGAGTGCCAACAACAAGAGAGCATTCCTCCTCCACCAGTTCCAGCGAACATTACA 519
| | ||| || ||| | |||||||||| |||||||| |||| |||| |
Sbjct 480 -G-G-TGA-TG---------AGA-A-CATTCCTCCTTCACCAGTT-CAGC-CTCATT-CT 521
Query 520 CC--ACCA-CCA-GTTCCAGCGAACATTACACCACCACCAGTTCCGACAAGTGCACCGTT 575
|| || | | | | | ||| ||||||||||||| || ||||||| || |||||||||||
Sbjct 522 CCAAACAATCAAGGAT-CAGAGAACATTACACCATCAGCAGTTCCAACGAGTGCACCGTT 580
Query 576 CGGtttttttGAGTGGGTTATGTCTCCTGATAATCTACAAACGGAGAACATTCAACAACC 635
| | | |||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||
Sbjct 581 CAGATCTTTTGAGTGGCTTATGTCTCCTAATAATCTACAAACAGAGAACATTCTACAACC 640
Query 636 ACCACTTCCGACGACTTTACCGTCCGGATCATTAGATTGGGCCAATTCTATGACCGATCT 695
|||| |||| ||||||||||||| || |||||||||| |||||||||||||| ||||||
Sbjct 641 ACCAGTTCCAACGACTTTACCGTTCGAATCATTAGATCAGGCCAATTCTATGAACGATCT 700
Query 696 ACTATCCGAGGGCATTCCTCCACCAGTTCA-GGTGACTTCACCGGACGAATCTTTATATT 754
|||||| |||| |||||||||||||| | | || | |||||||| ||| |||||||||||
Sbjct 701 ACTATCAGAGGACATTCCTCCACCAG-TAATGGCGCCTTCACCGTACGGATCTTTATATT 759
Query 755 GGC-AGTTGCCAGAAT-CTCTGAACGGTCCACTCTCTCCGAGCTTGA-T-GTTG-TCTC- 808
||| || |||||| || ||| ||||||||||||||||||||||||| | | ||||
Sbjct 760 GGCAAG-TGCCAG-ATCCTCCAAACGGTCCACTCTCTCCGAGCTTGATTCAACGATCTCT 817
Query 809 CAGTTCAACGTTCTCCGGAAAATTCACTGTTAGGGAGTGTAGACTTGCCAAATCCTCTCA 868
|| ||| | | |||||||| ||||| |||| |||||||||||| ||| ||||||||||
Sbjct 818 CA-CACAA-G-T-TCCGGAAACTTCACAGTTATGGAGTGTAGACTGGCCTAATCCTCTCA 873
Query 869 ACAATATACGACCAGAGAATGTTCCACCACAAGTTTCGGCAGCTTCACCGTTATGGAGTC 928
|| |||||||||| ||||| ||||||| || ||| |||||||||||||| |||||||||
Sbjct 874 ACGATATACGACCGGAGAACGTTCCACTACTGGTTCCGGCAGCTTCACCGCTATGGAGTC 933
Query 929 TAGACT-G--C--C---CC-----A--TACAATCAGAGAACGTTCTACCGTTAGTTTCAG 973
|||||| | | | || | ||||| |||||||||||||||| || ||| | |
Sbjct 934 TAGACTGGTCCAACTTTCCGAATTATCTACAACCAGAGAACGTTCTACCTTTCGTTCCGG 993
Query 974 CGACTTCACCGTTAGACTGGCCAAATCCT-CAGAACAATCTACAACCAGAGAACGTTCCA 1032
||||||||||||||||||| |||||| | ||||||||||||| | |||||||||||||
Sbjct 994 CGACTTCACCGTTAGACTGCCCAAAT-ATCCAGAACAATCTAC-A--AGAGAACGTTCCA 1049
Query 1033 CCACTGGTTCCGGCGACTTCACCGTCAATGAGTCTAGACTTTCCTAACTTTCAGAACACT 1092
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1050 CCATTGGTTCCGGCGACTTCACCGTCAATGAGTCTAGACTGGCCTAACTTTCAGAACACT 1109
Query 1093 CCACCACAAGTTC 1105
||| ||| |||||
Sbjct 1110 CCAGCACCAGTTC 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5