BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22420.1 Length=1443 Score E Sequences producing significant alignments: (Bits) Value Ahg921258 jgi|Araly1|921258|scaffold_102539.1 597 7e-170 > Ahg921258 jgi|Araly1|921258|scaffold_102539.1 Length=1406 Score = 597 bits (323), Expect = 7e-170 Identities = 606/733 (83%), Gaps = 57/733 (8%) Strand=Plus/Plus Query 400 GAAGACGATATGAACCAGGAACAGTTACATGGGTCTATGTTGCCTCCCCTGTTCGTAAAT 459 ||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 420 GAAGACGATATGAACCATGAACAGTTGCATGGGTCTACGTTGCCTCCTCTGTTCGCAAAT 479 Query 460 GGTGATGAGTGCCAACAACAAGAGAGCATTCCTCCTCCACCAGTTCCAGCGAACATTACA 519 | | ||| || ||| | |||||||||| |||||||| |||| |||| | Sbjct 480 -G-G-TGA-TG---------AGA-A-CATTCCTCCTTCACCAGTT-CAGC-CTCATT-CT 521 Query 520 CC--ACCA-CCA-GTTCCAGCGAACATTACACCACCACCAGTTCCGACAAGTGCACCGTT 575 || || | | | | | ||| ||||||||||||| || ||||||| || ||||||||||| Sbjct 522 CCAAACAATCAAGGAT-CAGAGAACATTACACCATCAGCAGTTCCAACGAGTGCACCGTT 580 Query 576 CGGtttttttGAGTGGGTTATGTCTCCTGATAATCTACAAACGGAGAACATTCAACAACC 635 | | | |||||||||| ||||||||||| ||||||||||||| |||||||||| |||||| Sbjct 581 CAGATCTTTTGAGTGGCTTATGTCTCCTAATAATCTACAAACAGAGAACATTCTACAACC 640 Query 636 ACCACTTCCGACGACTTTACCGTCCGGATCATTAGATTGGGCCAATTCTATGACCGATCT 695 |||| |||| ||||||||||||| || |||||||||| |||||||||||||| |||||| Sbjct 641 ACCAGTTCCAACGACTTTACCGTTCGAATCATTAGATCAGGCCAATTCTATGAACGATCT 700 Query 696 ACTATCCGAGGGCATTCCTCCACCAGTTCA-GGTGACTTCACCGGACGAATCTTTATATT 754 |||||| |||| |||||||||||||| | | || | |||||||| ||| ||||||||||| Sbjct 701 ACTATCAGAGGACATTCCTCCACCAG-TAATGGCGCCTTCACCGTACGGATCTTTATATT 759 Query 755 GGC-AGTTGCCAGAAT-CTCTGAACGGTCCACTCTCTCCGAGCTTGA-T-GTTG-TCTC- 808 ||| || |||||| || ||| ||||||||||||||||||||||||| | | |||| Sbjct 760 GGCAAG-TGCCAG-ATCCTCCAAACGGTCCACTCTCTCCGAGCTTGATTCAACGATCTCT 817 Query 809 CAGTTCAACGTTCTCCGGAAAATTCACTGTTAGGGAGTGTAGACTTGCCAAATCCTCTCA 868 || ||| | | |||||||| ||||| |||| |||||||||||| ||| |||||||||| Sbjct 818 CA-CACAA-G-T-TCCGGAAACTTCACAGTTATGGAGTGTAGACTGGCCTAATCCTCTCA 873 Query 869 ACAATATACGACCAGAGAATGTTCCACCACAAGTTTCGGCAGCTTCACCGTTATGGAGTC 928 || |||||||||| ||||| ||||||| || ||| |||||||||||||| ||||||||| Sbjct 874 ACGATATACGACCGGAGAACGTTCCACTACTGGTTCCGGCAGCTTCACCGCTATGGAGTC 933 Query 929 TAGACT-G--C--C---CC-----A--TACAATCAGAGAACGTTCTACCGTTAGTTTCAG 973 |||||| | | | || | ||||| |||||||||||||||| || ||| | | Sbjct 934 TAGACTGGTCCAACTTTCCGAATTATCTACAACCAGAGAACGTTCTACCTTTCGTTCCGG 993 Query 974 CGACTTCACCGTTAGACTGGCCAAATCCT-CAGAACAATCTACAACCAGAGAACGTTCCA 1032 ||||||||||||||||||| |||||| | ||||||||||||| | ||||||||||||| Sbjct 994 CGACTTCACCGTTAGACTGCCCAAAT-ATCCAGAACAATCTAC-A--AGAGAACGTTCCA 1049 Query 1033 CCACTGGTTCCGGCGACTTCACCGTCAATGAGTCTAGACTTTCCTAACTTTCAGAACACT 1092 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1050 CCATTGGTTCCGGCGACTTCACCGTCAATGAGTCTAGACTGGCCTAACTTTCAGAACACT 1109 Query 1093 CCACCACAAGTTC 1105 ||| ||| ||||| Sbjct 1110 CCAGCACCAGTTC 1122 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53973877165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5