BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22430.1
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472482 jgi|Araly1|472482|fgenesh2_kg.1__2436__AT1G22430.1 1921 0.0
> Ahg472482 jgi|Araly1|472482|fgenesh2_kg.1__2436__AT1G22430.1
Length=1388
Score = 1921 bits (1040), Expect = 0.0
Identities = 1190/1262 (94%), Gaps = 12/1262 (1%)
Strand=Plus/Plus
Query 1 AGTTGAAAAATCTTTAAAAGATAAGATACGAAGAACAAGAGCCCCctc-tctctctctcG 59
||||| ||||||| ||||||||||||||| |||||||||| || ||||||||||
Sbjct 1 AGTTGGAAAATCTATAAAAGATAAGATACAAAGAACAAGA------TCAGCTCTCTCTCG 54
Query 60 TCCACTCACCTA-TTGTGTATCTCATCATCACCATGGACAAGACATTTTTCTCTAGCAAC 118
|||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 55 TCCACTTACCTATTTGTGCATCTCATCATCACCATGGACAAGACATCTTTCTCTAGCAAC 114
Query 119 GAAGGGAAACCAATTACATGCAAAGCAGCAATATGTAGAAAAGCAGGAGAAGCATTGGTG 178
||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 115 GAAGGTAAACCAATTAGATGCAAAGCAGCAATATGTAGAAAAGCAGGAGAAGCGTTGGTG 174
Query 179 ATTGAAGACATCCACGTGGATCCACCCCAAGCTTATGAAGTTAGGATTAAGATTTTATGT 238
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 175 ATTGAAGACATCCACGTGGATCCACCTCAAGCTTATGAAGTTAGGATTAAGATTTTATGT 234
Query 239 ACTTCTCTATGTCACACTGATCTTACTTTCTGGAAACTAAG-CTTTGGACCAATTTCAAG 297
|||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||
Sbjct 235 ACTTCTCTATGTCACACTGATCTTACCTTCTGGAAACT-AGACTTTGGACCGATTTCAAG 293
Query 298 GTTTCCTAGGATTCTTGGACACGAAGCAGTCGGTGTGGTCGAGAGCATTGGTGAAAACGT 357
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 294 GTTTCCTAGGATTCTTGGACATGAAGCAGTCGGTGTGGTCGAGAGCATTGGTGAAAACGT 353
Query 358 GG-ACGGATTTAAACAAGGTGACGTCGTTTTGCCAGTTTTTCATCCTTATTGTGAAGAAT 416
|| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 354 GGTA-GGATTTAAACAAGGCGACGTCGTTTTGCCAGTTTTTCATCCTTATTGCGAAGAAT 412
Query 417 GCAAAGACTGCAAATCTTCAAAAACCAACTGGTGTGACAGATATGCCGAAGATTTCATAT 476
||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 413 GCAAAGACTGCAAGTCTTCAAAAACCAACTGGTGCGACAGATATGCAGACGATTTCATAT 472
Query 477 CAAACACAAGACGATATGGAATGGCTTCAAGATTCAAAGATTCTTCAGGAGAAGTGATTC 536
|||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 473 CAAACACAAGACGATATGGAATGGCTTCAAGATTCAAAGACACTTCGGGAGAAGTTATTC 532
Query 537 ATCATTTTCTCTTTGTCTCAAGTTTTTCCGAATACACCGTCGTGGATATTGCACATCTTG 596
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 533 ACCATTTTCTCTTTGTCTCGAGTTTTTCCGAATACACCGTCGTGGATATTGCACATCTTG 592
Query 597 TCAAAATATCTCCTGAAATCCCCGTTGATAAAGCGGCTTTGCTCAGCTGCGGTGTCTCCA 656
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 593 TCAAAATATCTCCTGAAATCCCTGTTGATAAAGCGGCTTTGCTCAGCTGTGGTGTCTCCA 652
Query 657 CAGGAATTGGAGCAGCTTGGAAGGTGGCTAACGTGGAAGAAGGCTCCACCATTGCAATTT 716
||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| |||
Sbjct 653 CAGGAATTGGAGCAGCTTGGAAGGTAGCTAACGTGGAAGAAGGCTCTACCGTTGCAGTTT 712
Query 717 TTGGCCTTGGTGCTGTTGGACTTGCGGTTGCAGAAGGAGCCAGGCTACGAGGAGCCGCAA 776
||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||
Sbjct 713 TTGGCCTTGGTGCTGTTGGACTTGCGGTTGCAGAAGGAGCCAGACTACGTGGGGCTGCAA 772
Query 777 AGATTATTGGTATTGATACCAATTCTGATAAATTCGAGCTAGGTAAGAAATTTGGTTTTA 836
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 773 AGATCATTGGTATTGATACCAATCCTGATAAATTCGAGCTAGGTAAGAAATTTGGTTTTA 832
Query 837 CGGATTTCATCAATCCGACCTTATGCGGAGAAAAGAAGATTAGTGAGGTCATTAAAGAAA 896
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 833 CGGATTTCATCAATCCTACCTTATGCGGAGAAAAGAAGATTAGTGAGGTGGTTAAAGAAA 892
Query 897 TGACAGAAGGAGGAGTTGACTATAGTTTCGAATGCGTTGGCTTAGCTTCTTTACTTAACG 956
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 893 TGACAGAAGGAGGCGTTGACTATAGTTTCGAATGCGTTGGCTTAGCTTCTTTACTTACCG 952
Query 957 AGGCTTTCATCAGTACCCGCACGGGAACAGGTAAAACTGTAATGTTGGGGATGGAGAAGC 1016
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 953 AGGCTTTCATCAGTACCCGCACGGGAACAGGTAAAACAGTAATGTTGGGGATGGAGAAGC 1012
Query 1017 ATGCAGCGCCAATTAGTTTGGGTAGTTTTGATCTTTTAAGAGGCAGAGTTATTTGCGGAA 1076
||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1013 ATGCAGCACCAATTAGTTTGGGTAGTTTTGATCTTTTAAAAGGCAGAAATATTTGCGGAA 1072
Query 1077 GCTTGTTCGGTGGTCTGAAATCCAAACTTGATATTCCCATTCTAGTGGATCATTACCTAA 1136
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1073 GCTTGTTCGGTGGTCTGAAATCCAAACTTGATATTCCCATTCTCGTCGATCATTACCTTA 1132
Query 1137 AAAAGGAGCTCAATCTGGATAGTTTCATTACACACGAACTGAATTTCAAAGAAATTAATA 1196
|||||||||||||| |||||||||| || ||||| ||||||||||| || ||||| ||||
Sbjct 1133 AAAAGGAGCTCAATTTGGATAGTTTTATCACACATGAACTGAATTTTAAGGAAATCAATA 1192
Query 1197 AGGCTTTCGCTTTATTAGAGGAAGGAAAGTCTCTCCGCTGCATTCTATGGATGGATAAGT 1256
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1193 AGGCTTTCGCATTATTAGAGGAAGGAAAGTCTCTACGCTGCATTCTATGGATGGATAAGT 1252
Query 1257 AA 1258
||
Sbjct 1253 AA 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55992660150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5