BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22440.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472484 jgi|Araly1|472484|fgenesh2_kg.1__2438__AT1G22440.1 1790 0.0
Ahg472482 jgi|Araly1|472482|fgenesh2_kg.1__2436__AT1G22430.1 891 0.0
Ahg492663 jgi|Araly1|492663|fgenesh2_kg.7__2096__AT4G22110.2 693 0.0
> Ahg472484 jgi|Araly1|472484|fgenesh2_kg.1__2438__AT1G22440.1
Length=1291
Score = 1790 bits (969), Expect = 0.0
Identities = 1176/1275 (92%), Gaps = 18/1275 (1%)
Strand=Plus/Plus
Query 26 AAAAATGAGCTATTGACAAAAACAAGAGAATCTTTTTGGGGAGATAATATAAGAAGAGCA 85
|||||| ||||||||| ||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 1 AAAAATAAGCTATTGATAAAAACAAGAGAATCTTTTTGCAGAGATAATATAACAAGAACA 60
Query 86 AGTGActctcactctctctctctcAGATCCCTCCATCATTGTTCACCATGGACAAGGCTT 145
|||| |||||||||| | |||||| ||||||||||||||||||||||||| ||||
Sbjct 61 AGTG------ACTCTCTCTC-C-CAGATCACTCCATCATTGTTCACCATGGACAAAGCTT 112
Query 146 CA------ATCACTGAAGGAAAGCCGATTCGATGCAAAGCAGCAATCTTAAGAAAAGCAG 199
|| | ||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 113 CACTCTCCAGCACCGAAGGAAAGCCGATTCGATGCAAAGCAGCAATCTTACGGAAAGCAG 172
Query 200 GAGAACCATTGGTGATAGAAGAGATCCAAGTTGATCCACCTCAAGCTTACGAAGTCAGAA 259
||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 173 GAGAAGCTTTGGTGATAGAAGAGATCCAAGTTGATCCACCTCAAGCTTACGAAGTTAGGA 232
Query 260 TCAAAATTTTATGCACTTCTCTATGTCACACGGATGTTACTTTCTGGAAACTAGACAGTG 319
| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 233 TTAAAATTCTATGTACTTCTCTATGTCACACGGATGTTACTTTCTGGAAACTAGAAAGTG 292
Query 320 GACCGCTTGCAAGATTTCCTAGGATTCTAGGTCATGAAGCAGTCGGTGTGGTCGAGAGTA 379
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 293 GACCGCTTGCAAGGTTTCCTAGGATCCTAGGTCACGAAGCAGTCGGTGTGGTCGAGAGTA 352
Query 380 TTGGAGAAAAGGTAGACGGATTTAAACAAGGCGACGTCGTTTTGCCAGTGTTTCATCCTC 439
|||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 353 TTGGAGCCAACGTAGACGGATTTAAACAAGGCGACGTCGTTTTGCCAGTGTTTCAACCTC 412
Query 440 AATGTGAAGAATGCAAAGAGTGCATATCTCCAAAGAGCAACTGGTGCACAAAATATACAA 499
||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |
Sbjct 413 AATGTGAAGAATGCAAAGAATGCAAATCTCCAAAGAGCAACTGGTGCACAAGATATACTA 472
Query 500 ACGATTAT-TTATCAAACACAAGACGATATGGAATGACTTCAAGATTCAAGGACTCTCGT 558
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 473 ACGATT-TCTTATCAAACACTAGACGATATGGAATGACTTCAAGATTCAAGGACTCTTTT 531
Query 559 GGAGAAGATATTCACCATTTCATCTTTGTCTCAAGTTTTACTGAATATACCGTTGTAGAT 618
||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 532 GGAGAAGTTATTCACCATTTTATCTTTGTCTCGAGTTTTACTGAATATACCGTGGTAGAT 591
Query 619 ATCGCACATCTCGTCAAAATATCTCCTGAAATTCCCGTTGATATAGCGGCCTTGCTCAGC 678
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 592 ATCGCACATCTCGTCAAAATCTCTCCTGAAATTCCCGTTGATATAGCAGCCTTGCTCAGC 651
Query 679 TGCAGTGTTGCCACAGGACTTGGAGCTGCGTGGAAAGTGGCTGACGTAGAGGAAGGTTCC 738
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TGCGGTGTTGCCACAGGAATTGGAGCTGCGTGGAAAGTGGCTGACGTAGAGGAAGGTTCC 711
Query 739 ACTGTCGTTATCTTTGGCCTTGGTGCTGTTGGACTAGCGGTTGCAGAAGGAGTCAGATTG 798
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 712 ACTGTCGCTATCTTTGGCCTTGGTGCTGTTGGACTCGCGGTTGCAGAAGGAGTCAGATTG 771
Query 799 CGTGGAGCCGCAAAAATCATCGGTGTGGATCTCAATCCCGCGAAATTTGAAATAGGTAAA 858
|| |||||| | || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 772 CGGGGAGCCACTAAGATCATCGGTGTGGATCTCAATCCCGCCAAATTTGAAATAGGTAAA 831
Query 859 AGATTTGGAATCACAGATTTTGTCAATCCTGCTTTGTGTGGGGAGAAGACAATTAGCGAG 918
|||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 832 AGATACGGAATGACGGATTTCGTCAATCCTGCTTTGTGTGGGGAGAAGACAATTAGTGAG 891
Query 919 GTGATTAGAGAAATGACAGATGTAGGAGCTGACTACAGTTTTGAATGCATTGGTTTAGCT 978
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 892 GTGATTAGAGAAATGACAGAAGTAGGAGCTGACTACAGTTTTGAATGCATTGGTTTAGCT 951
Query 979 TCCTTGATGGAAGAGGCATTCAAGAGTACTCGCCCGGGATCGGGTAAAACGATAGTATTG 1038
||||||||||||||||| ||||| || |||||||| ||||||||||||||| || |||||
Sbjct 952 TCCTTGATGGAAGAGGCTTTCAATAGCACTCGCCCTGGATCGGGTAAAACGGTAATATTG 1011
Query 1039 GGGATGGAACAAAAGGCTTTGCCAATAAGCTTGGGTAGTTATGATCTTCTCAGAGGCAGA 1098
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1012 GGGATGGAACAAAAGGCTATGCCAGTAAGCTTGGGTAGTTATGATCTTCTCAGAGGCAGA 1071
Query 1099 ACTGTATGCGGCACTTTATTTGGCGGTTTGAAACCCAAACTTGATATTCCTATTCTCGTG 1158
||| |||| || || || || || |||||||||||||||||||||||||| |||||||||
Sbjct 1072 ACTATATGTGGAACATTGTTCGGTGGTTTGAAACCCAAACTTGATATTCCAATTCTCGTG 1131
Query 1159 GATCGTTATTTGAAAAAGGAGCTTAATCTAGA-GGATCTGATTACACACGAATTAAGCTT 1217
|||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||
Sbjct 1132 GATCGTTATTTGAAAAAGGAGCTTAACCTAGACGG-TCTGATTACACATGAATTAAGCTT 1190
Query 1218 TGAAGAAATTAACAAAGCTTTCCATTTATTGGCTGAGGGAAACTCTATCCGTTGCATTAT 1277
||| ||||||||||||||||| |||||||||| || |||||||||||||||||| || |
Sbjct 1191 TGAGGAAATTAACAAAGCTTTTGATTTATTGGCGGAAGGAAACTCTATCCGTTGCGTTGT 1250
Query 1278 ATGGATGGATAAATA 1292
|||||||||||||||
Sbjct 1251 ATGGATGGATAAATA 1265
> Ahg472482 jgi|Araly1|472482|fgenesh2_kg.1__2436__AT1G22430.1
Length=1388
Score = 891 bits (482), Expect = 0.0
Identities = 942/1160 (81%), Gaps = 48/1160 (4%)
Strand=Plus/Plus
Query 154 GAAGG-AAAGCCGATTCGATGCAAAGCAGCAATCT-TAAGAAAAGCAGGAGAACCATTGG 211
||||| ||| || ||| |||||||||||||||| | | ||||||||||||||| | ||||
Sbjct 115 GAAGGTAAA-CCAATTAGATGCAAAGCAGCAATATGT-AGAAAAGCAGGAGAAGCGTTGG 172
Query 212 TGATAGAAGAGATCCAAGTTGATCCACCTCAAGCTTACGAAGTCAGAATCAAAATTTTAT 271
|||| ||||| ||||| || ||||||||||||||||| ||||| || || || |||||||
Sbjct 173 TGATTGAAGACATCCACGTGGATCCACCTCAAGCTTATGAAGTTAGGATTAAGATTTTAT 232
Query 272 GCACTTCTCTATGTCACACGGATGTTACTTTCTGGAAACTAGACAGTGGACCGCTTGCAA 331
| ||||||||||||||||| ||| |||| ||||||||||||||| ||||||| || |||
Sbjct 233 GTACTTCTCTATGTCACACTGATCTTACCTTCTGGAAACTAGACTTTGGACCGATTTCAA 292
Query 332 GATTTCCTAGGATTCTAGGTCATGAAGCAGTCGGTGTGGTCGAGAGTATTGGAGAAAAGG 391
| |||||||||||||| || |||||||||||||||||||||||||| ||||| ||||| |
Sbjct 293 GGTTTCCTAGGATTCTTGGACATGAAGCAGTCGGTGTGGTCGAGAGCATTGGTGAAAACG 352
Query 392 TAG-ACGGATTTAAACAAGGCGACGTCGTTTTGCCAGTGTTTCATCCTCAATGTGAAGAA 450
| | | |||||||||||||||||||||||||||||||| ||||||||| | || ||||||
Sbjct 353 TGGTA-GGATTTAAACAAGGCGACGTCGTTTTGCCAGTTTTTCATCCTTATTGCGAAGAA 411
Query 451 TGCAAAGAGTGCATA-TCTCCAAAGAGCAACTGGTGC-ACAAAATATACAAACGATTATT 508
|||||||| |||| | ||| |||| | |||||||||| ||| | ||| || |||||| |
Sbjct 412 TGCAAAGACTGCA-AGTCTTCAAAAACCAACTGGTGCGACAGA-TATGCAGACGATT-TC 468
Query 509 -TATCAAACACAAGACGATATGGAATGACTTCAAGATTCAAGGACTCT-CGTGGAGAAGA 566
|||||||||||||||||||||||||| ||||||||||||| ||| || || |||||||
Sbjct 469 ATATCAAACACAAGACGATATGGAATGGCTTCAAGATTCAAAGACACTTCG-GGAGAAGT 527
Query 567 TATTCACCATTT-CATCTTTGTCTCAAGTTTTACTGAATATACCGTTGTAGATATCGCAC 625
|||||||||||| | |||||||||| |||||| | ||||| ||||| || ||||| ||||
Sbjct 528 TATTCACCATTTTC-TCTTTGTCTCGAGTTTTTCCGAATACACCGTCGTGGATATTGCAC 586
Query 626 ATCTCGTCAAAATATCTCCTGAAATTCCC-GTTGATATAGCGGCCTTGCTCAGCTGCAGT 684
|||| |||||||||||||||||||| ||| ||||||| |||||| ||||||||||| ||
Sbjct 587 ATCTTGTCAAAATATCTCCTGAAAT-CCCTGTTGATAAAGCGGCTTTGCTCAGCTGTGGT 645
Query 685 GT-TGCCACAGGACTTGGAGCTGCGTGGAAAGTGGCTGACGTAGAGGAAGGTTCCACTGT 743
|| | |||||||| ||||||| || ||||| || ||| |||| || ||||| || || ||
Sbjct 646 GTCT-CCACAGGAATTGGAGCAGCTTGGAAGGTAGCTAACGTGGAAGAAGGCTCTACCGT 704
Query 744 CGTTA-TCTTTGGCCTTGGTGCTGTTGGACTAGCGGTTGCAGAAGGAGTCAGATTGCGTG 802
| | | ||||||||||||||||||||||| |||||||||||||||| |||| | ||||
Sbjct 705 TGC-AGTTTTTGGCCTTGGTGCTGTTGGACTTGCGGTTGCAGAAGGAGCCAGACTACGTG 763
Query 803 GAGCCGCAAAAATCATCGGTGTGGAT-CTCAATCCCGCGAAATTTGAAATAGGTAA-AAG 860
| || ||||| ||||| ||| | ||| | |||||| | ||||| || ||||||| ||
Sbjct 764 GGGCTGCAAAGATCATTGGTATTGATAC-CAATCCTGATAAATTCGAGCTAGGTAAGAA- 821
Query 861 ATTTGGAATCACAGATTTTGTCAATCCTGCTTTGTGTGGGGAGAAGACA-ATTAGCGAGG 919
|||||| | || ||||| |||||||| | || || || || |||| | ||||| ||||
Sbjct 822 ATTTGGTTTTACGGATTTCATCAATCCTACCTTATGCGGAGAAAAGA-AGATTAGTGAGG 880
Query 920 TGATTAGAGAAATGACAGATGTAGGAGCTGACTACAGTTTTGAATGCATTGGTTTAGCTT 979
|| ||| |||||||||||| | ||| | |||||| ||||| |||||| |||| |||||||
Sbjct 881 TGGTTAAAGAAATGACAGAAGGAGGCGTTGACTATAGTTTCGAATGCGTTGGCTTAGCTT 940
Query 980 CCTTGA-TGGAA-GAGGCATTCAAGAGTACTCGCCCGGGATCGGGTAAAAC-GATAGTAT 1036
| || | | | ||||| |||| ||||| ||| ||||| | |||||||| | || | |
Sbjct 941 CTTT-ACTT-ACCGAGGCTTTCATCAGTACCCGCACGGGAACAGGTAAAACAG-TAATGT 997
Query 1037 TGGGGATGGAACAAA-AGGCTTTGCCAATAAGCTTGGGTAGTTATGATCTTCTCAGAGGC 1095
|||||||||| || | || ||||| || |||||||||| ||||||| | | ||||
Sbjct 998 TGGGGATGGAG-AAGCATGCAGCACCAATTAGTTTGGGTAGTTTTGATCTTTTAAAAGGC 1056
Query 1096 AGAACTGTATGCGGCA-CTTTATTTGGCGGTTTGAAACCCAAACTTGATATTCCTATTCT 1154
|||| | | ||||| | ||| || || ||| ||||| |||||||||||||||| |||||
Sbjct 1057 AGAAATATTTGCGGAAGCTTG-TTCGGTGGTCTGAAATCCAAACTTGATATTCCCATTCT 1115
Query 1155 CGTGGATCGTTAT-TTGAAAAAGGAGCTTAATCTAGAG-GATCTGATTACACACGAATT- 1211
||| |||| ||| || ||||||||||| ||| | || | | | || ||||| ||| |
Sbjct 1116 CGTCGATCATTACCTT-AAAAAGGAGCTCAATTTGGATAGTTTT-ATCACACATGAACTG 1173
Query 1212 AAGCTTTGAAG-AAATTAACAAAGCTTTC-CATTTATTGGCTGAGGGAAACTCTATCCGT 1269
|| ||| ||| |||| || || |||||| |||| ||| | || ||||| ||| | ||
Sbjct 1174 AAT-TTT-AAGGAAATCAATAAGGCTTTCGCATT-ATTAGAGGAAGGAAAGTCTCTACGC 1230
Query 1270 TGCATTATATGGATGGATAA 1289
|||||| |||||||||||||
Sbjct 1231 TGCATTCTATGGATGGATAA 1250
> Ahg492663 jgi|Araly1|492663|fgenesh2_kg.7__2096__AT4G22110.2
Length=1273
Score = 693 bits (375), Expect = 0.0
Identities = 651/781 (83%), Gaps = 32/781 (4%)
Strand=Plus/Plus
Query 149 TCACTGAAGGAAAGCCGATTCGATGCAAAGCAGCAATCT-TAAGAAAAGCAGGAGAACCA 207
|||| |||||||||||||||||||||||||||||||| | || |||| |||||||| ||
Sbjct 54 TCAC-GAAGGAAAGCCGATTCGATGCAAAGCAGCAATATCTAGGAAAC-CAGGAGAAGCA 111
Query 208 TTGGTGATAGAAGAGATCCAAGTTGATCCACCTCAAGCTTACGAAGTCAGAATCAAAATT 267
|||||||||||||||||||| || ||||||||||||||||||||||| || || || ||
Sbjct 112 TTGGTGATAGAAGAGATCCATGTGGATCCACCTCAAGCTTACGAAGTTAGGATTAAGATC 171
Query 268 TTATGCACTTCTCTATGTCACACGGATGTTACTTTCTGGAAACTAGACAGTGGACCGCTT 327
|||| || ||| |||||||||| |||||| ||||||||||| |||| ||||||||||||
Sbjct 172 ATATGTACATCTTTATGTCACACCGATGTTTCTTTCTGGAAAGTAGAAAGTGGACCGCTT 231
Query 328 GCAAGATTTCCTAGGATTCTAGGTCATGAAGCAGTCGGTGTGGTCGAGAGTATTGGAGAA 387
| ||| ||||||| ||||||||| || ||||||||||||||| ||||||||||||| |||
Sbjct 232 GTAAGGTTTCCTATGATTCTAGGACACGAAGCAGTCGGTGTGATCGAGAGTATTGGTGAA 291
Query 388 AAGGTAGAC-GGATTTAAACAAGGCGACGTCGTTTTGCCAGTGTTTCATCCTCAATGTGA 446
|| || |||||| ||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 292 CCTGT-GAATGGATTTCAACAAGGTGACGTCGTTTTGCCAGTGTTTCACCCTCATTGTGA 350
Query 447 AGAATGCAAAGAGTGCATATC-TCCAAAGAGCAACTGGTGCACAAAATATACAAACGATT 505
|||||| | ||| |||| ||| || ||||||||||||||| ||| || | | | ||||
Sbjct 351 AGAATGTAGAGACTGCAAATCCTC-AAAGAGCAACTGGTGTGCAAGATTTGCCGATGATT 409
Query 506 ATTT-ATCAAACACAAGACGATATGGAATGACTTCAAGATTCAAGGACTCT-CGTGGAGA 563
|| ||||||||||||||| ||||||||||||||| ||||||| |||||| || |||||
Sbjct 410 -TTGCATCAAACACAAGACGGTATGGAATGACTTCAGGATTCAAAGACTCTTCG-GGAGA 467
Query 564 AGATATTCACCATTT-CATCTTTGTCTCAAGTTTTACTGAATATACCGTTGTAGATATCG 622
||||||| ||||||| | ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 468 AGATATTAACCATTTTC-TCTTTGTCTCAAGTTTTTCTGAATATACCGTCGTAGATATCG 526
Query 623 CACATCTCGTCAAAATATCTCCTGAAATTCCCGTTGATATAGCGGCCTTGCTCAGCTGCA 682
|||||||||||||||| |||||||| ||||| ||||||| ||| || ||||||||||||
Sbjct 527 CACATCTCGTCAAAATGTCTCCTGATATTCCGGTTGATAAAGCAGCATTGCTCAGCTGCG 586
Query 683 GTGTTGCCACAGGACTTGGAGCTGCGTGGAAAGTGGCTGACGTAGAGGAAGGTTCCACTG 742
||||| |||||||| ||||||| || |||||||||||| || | || |||| |||||
Sbjct 587 GTGTTTCCACAGGAATTGGAGCAGCTTGGAAAGTGGCTAACATGGAACAAGGCTCCACCA 646
Query 743 TCGTTA-TCTTTGGCCTTGGTGCTGTTGGACTAGCGGT-TGCAGAAGGAGTCAGATTGCG 800
| | | | ||||||||| ||||||||||||| ||||| | || | | |||||
Sbjct 647 TTGC-ACTTTTTGGCCTTCGTGCTGTTGGACTTGCGGTAT-CA-AT----T----TTGCG 695
Query 801 TGGAGCCG-CAAAAATCATCGGTGTGGATCTCAATCCCGCGAAATTTGAAATAGGTAA-A 858
|||||||| ||| | |||| ||||| ||||||||| | | ||||| || ||||||| |
Sbjct 696 TGGAGCCGGCAAGA-TCATTGGTGTTGATCTCAATGCTGAAAAATTCGACCTAGGTAAGA 754
Query 859 AGATTTGGAATCACAGATTTTGTCAATCCTGCTTTGTGTGGGGAGAAGACA-ATTAGCGA 917
| |||||| |||| ||||| |||||||| | |||||||| | |||| | ||||||||
Sbjct 755 A-ATTTGGTTTCACGGATTTCATCAATCCTACCTTGTGTGGAAAAAAGA-AGATTAGCGA 812
Query 918 G 918
|
Sbjct 813 G 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5