BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22450.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921266 jgi|Araly1|921266|scaffold_102547.1 979 0.0
> Ahg921266 jgi|Araly1|921266|scaffold_102547.1
Length=621
Score = 979 bits (530), Expect = 0.0
Identities = 593/623 (95%), Gaps = 6/623 (1%)
Strand=Plus/Plus
Query 304 CTTCTTTTGACCACACACTTTCAATGGCGGATGCTGTGAACGCTCAAACTCCATCGCTCT 363
|||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1 CTTCTTTTGACCACACGC-TTCAATGGCGGAAGCTGTGACCGCTCAAACTCCATCGCTCT 59
Query 364 CCGAGCAATATCATTTGGAGAAAGAAGTGAAGCAAGACACAAGTGCAAAGCCTGTTGAAG 423
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 60 CCGAGCAATATCATTTGGAGAAAGAAGTGAAGCAAGATACAAGTGCAAAGCCTGTGGAAG 119
Query 424 TGAAAGAGGTGGCACCAGAAGTTACTACACAAGCTGAAGAGGTTAAGACGGAGCAAGCTA 483
||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 120 TGAAAGAGGTGGCACCAGAAGTTACTACACAAGCTGAAGAGGTTACCAAGGACCAAGCTA 179
Query 484 AGGAAGAATCTCCTGTTGAGGAAGCGGTTTCTG-TAGTTGAAGAGAAGTCTGAATCTGCT 542
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 180 AGGAAGAATCTCCTGTTGAGGAAGCGGTTTCTGCT-GTTGAAGAGAAGTCTGAATCTGCT 238
Query 543 CCTGAATCAACGGAAGTGGCTTCTGAGGCT-C--CTGCTGCAGCGGAAGACAATGCTGAA 599
||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 239 CCTGAGTCAACGGAAGTGACTTCTGAGGCTCCTGCTGCTGCAGCGGAAGACAATGCTGAA 298
Query 600 GAGACTCCTGCTGCTGCTGAAGAAAATAATGACGAAAACGCTAGTGAAGAAGTTGCTGAA 659
||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 GAGACCCCTCCTGCTGTTGAAGAAAATAATGACGAAAACACTAGTGAAGAAGTTGCTGAA 358
Query 660 GAAACCCCTGATGAGATCAAGCTTGAGACAGCTCCTGCTGATTTCCGTTTCCCTACAACA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 GAAACCCCTGATGAGATCAAGCTTGAGACAGCTCCTGCTGATTTCCGTTTCCCGACAACA 418
Query 720 AACCAAACAAGGCATTGTTTCACTCGCTACGTTGAATATCACAGATGTGTAGCTGCTAAG 779
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 419 AACCAAACAAGGCATTGTTTCACTCGTTACATCGAATATCACAGATGTGTAGCTGCTAAG 478
Query 780 GGTGATGATGCTCCAGAATGCGATAAGTTTGCAAAGTTTTATCGATCTCTTTGCCCCAGC 839
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGTGACGATGCTCCAGAATGCGATAAGTTTGCAAAGTTTTATCGATCTCTTTGCCCCAGC 538
Query 840 GAATGGGTTGATAGGTGGAACGAGCAAAGAGAAAATGGAACATTCCCTGGTCCTCTACCC 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 GAATGGGTTGATAGGTGGAACGAGCAAAGAGAAAATGGAACATTCCCTGGTCCTCTTCCC 598
Query 900 TGAAGAAAAATCATATTGCCATC 922
||||||| || |||||||||||
Sbjct 599 TGAAGAAGGATTATATTGCCATC 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5