BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22460.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472486 jgi|Araly1|472486|fgenesh2_kg.1__2440__AT1G22460.1 2682 0.0
> Ahg472486 jgi|Araly1|472486|fgenesh2_kg.1__2440__AT1G22460.1
Length=2033
Score = 2682 bits (1452), Expect = 0.0
Identities = 1841/2022 (91%), Gaps = 53/2022 (3%)
Strand=Plus/Plus
Query 77 AAA-AAGATCGTCGATTTTTGGGCATT---CATCATCGTGGCATTGATTGATTGATTGGC 132
||| ||||||||||||||||||||||| || ||||||||||||| | ||||||| |
Sbjct 46 AAACAAGATCGTCGATTTTTGGGCATTAGACACCATCGTGGCATTG---G-TTGATTGAC 101
Query 133 ATCTCATACTTTCCTTTTTCGGCTAAT-CTCTACTCCCAAAAATAGAAAGTCTCATTCAC 191
|||||||||||||||||||||| ||| | || ||| | | | || | || |
Sbjct 102 CTCTCATACTTTCCTTTTTCGGCAAATAC-CT-CTCTC-----T----A--CT-ACTC-C 146
Query 192 TCACCAAGCGAAAACAG-AACAAGAAGAAGATTCAAGATCCGTTTTTTCTGATTCTTTTC 250
|| ||| | || || || ||| | |||||||||||||||||||||| |||||||
Sbjct 147 -CA-CAA-ATAGAA-AGTCTCATCAAG-A-ATTCAAGATCCGTTTTTTCTGAATCTTTTC 200
Query 251 TTTGACGAGCGGTTTGCTTT-TCCTGAATGTTTCCGGTTGGATCTTTCACATAAGAAATG 309
|||||||||||||||| ||| || |||||||| ||| ||||||| ||| || |||||||
Sbjct 201 TTTGACGAGCGGTTTG-TTTGTCTTGAATGTTGCCGTTTGGATCGTTCTCA-GAGAAATG 258
Query 310 CGGCGGCGGAGGAAGACGGTTGTGGTGGCGGTAGTGATACGGAGGGTGCTAATATGGGCC 369
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 259 CGGCGGCGGAGGAAGACGGTTGTGGTGGCGGTAGTGATACGGAGGGTGCTGATATGCGCC 318
Query 370 ATATGCGTAATGACATTACTCTGTTTTCTCACCGTACACATCTATGTTGCTCCTTTCAAT 429
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 319 ATATGCGTAATGACATTACTCTGTTTTCTCACCGTACACATCTATATTGCTCCTTTCAAT 378
Query 430 AGACTCCCTA--A-GCTTCACCTTAACCACCACAACACTCGCCGAGGATATATCATAGAT 486
|||||||||| | |||||| ||||| ||||||||||||||| ||||| ||||||| |||
Sbjct 379 AGACTCCCTAGGAGGCTTCATCTTAATCACCACAACACTCGCAGAGGAGATATCATCGAT 438
Query 487 TACAATAAATCCATCACAGAACAGAGTTTAACGAGGAATCTGTCTCGTCCGGAATCTAAT 546
||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 439 TACAACAAATCCATCACAGAACAGAGCTTAACGAGGAATCTGTCTCGTTTAGAATCGAAT 498
Query 547 GAA-ATTC--CTCTCATCTCCAATCCCAA-GACAAATGAGATTCAGTATCAA-AGTTCGA 601
||| ||| |||| ||| |||| || || || |||||||||||||||| || ||||| |
Sbjct 499 GAAGCTTCTTCTCTTATCACCAAACCAAAGGA-AAATGAGATTCAGTAT-AAGAGTTCAA 556
Query 602 TCTCGGAACACATCAACAACACCGAGCTAGTTCCTCCTCATGTGTCTACAAGCCCTTCTT 661
|||||||||||||||| |||||||||||||| ||||||||| | |||||||| || |||
Sbjct 557 TCTCGGAACACATCAAGAACACCGAGCTAGTACCTCCTCATTTCTCTACAAG-CC--CTT 613
Query 662 CTTCTTCCAAGTTGAACATTACAAGCGGGATACCGGATTTCGACAAGCTTTGGAAACATC 721
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 614 CTTCTTCCAAGTTGAACATGACAAGCGGGATACCGGATTTCGACAAGCTTTGGAAACCTC 673
Query 722 CACCGAACCGAAATTTCGTGCCTTGTGTCAGTCCCAATCCTAGTTACACATCTCCATTGG 781
||||||||||| ||||||| |||||||||| |||||||||||||||||||||| || |||
Sbjct 674 CACCGAACCGAGATTTCGTCCCTTGTGTCAATCCCAATCCTAGTTACACATCTTCACTGG 733
Query 782 AATCTAGAGGCTATCTTCTTGTTCACACGAATGGCGGGCTTAACCAAATGCGCGCTGGGA 841
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 734 AATCTAGAGGCTATCTTCTTGTTCACACAAATGGCGGGCTTAACCAGATGCGCGCTGGGA 793
Query 842 TATGTGACATGGTAGCTATAGCTCGGATTATAAATGCAACACTTGTAGTCCCCGAGCTCG 901
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 794 TATGTGACATGGTAGCTATAGCTCGGATTATAAATGCAACACTCGTAGTCCCAGAGCTCG 853
Query 902 ACAAACGATCTTTCTGGCAGGATACTAGCAAATTCTCGGATGTTTTTGATGAAGATCACT 961
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 854 ATAAACGGTCTTTCTGGCAGGATACTAGCAAATTCTCGGATGTCTTTGATGAAGATCACT 913
Query 962 TCATCAATGCTTTATCAAAAGATATAAGAGTCATCAAGAAGCTCCCAAAAGGCATTGATG 1021
|||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||
Sbjct 914 TCATCAATGCTTTATCTAAAGATATAAGAGTCATCAAGAAACTTCCAAAAGGTATTGATG 973
Query 1022 GA-TTAACAAAGGTGGTTAAGCATTTCAAAAGCTACTCAGGATTGAGTTACTACCAAAAT 1080
|| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 974 GACTT-ACAAAAGTGGTTAAGCATTTCAAAAGCTATTCAGGATTGAGTTACTACCAAAAT 1032
Query 1081 GAGATAGCTAGTATGTGGGATGAATATAAAGTGATCCGAGCCGCGAAATCCGATTCTCGT 1140
||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 1033 GAGATAGCTAGCATGTGGGATGAATACAAGGTGATCCGAGCCGCCAAATCCGATTCTCGT 1092
Query 1141 CTAGCAAACAACAACCTACCTCCTGATATTCAGAAGCTGCGATGTCGTGCTTGTTATGAG 1200
|||||||||||||| |||||||||||||| ||||||||||| || ||||| || ||||||
Sbjct 1093 CTAGCAAACAACAATCTACCTCCTGATATCCAGAAGCTGCGTTGCCGTGCATGCTATGAG 1152
Query 1201 GCTCTACGCTTCTCTACTAAAATCAGATCAATGGGAGAACTTTTGGTCGATAGGATGAGG 1260
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1153 GCTCTACGCTTCTCTACTAAAATCAGATCAATGGGAAAACTTTTGGTCGATAGGATGAGG 1212
Query 1261 TCTTATGGTCTATACATCGCATTGCATTTGAGGTTCGAGAAAGAGATGCTAGCATTCAGC 1320
|||||||||||||||||||| ||||||||||| || |||||||| |||||||| ||||||
Sbjct 1213 TCTTATGGTCTATACATCGCGTTGCATTTGAGATTTGAGAAAGACATGCTAGCTTTCAGC 1272
Query 1321 GGCTGCAACCATGGTCTATCCGCTTCTGAAGCTGCTGAGCTAAGGAGGATAAGGAAGAAC 1380
|| |||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct 1273 GGATGCAACCATGGTTTATCTGCTTCAGAAGCTGCTGAGCTAAGGAAGATAAGGAAGAAC 1332
Query 1381 ACAGCGTATTGGAAAGTGAAAGACATTGACGGAAGAGTACAAAGACTCAAAGGCTATTGT 1440
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1333 ACAGCGTATTGGAAAGTGAAAGACATTGATGGAAGAGTACAAAGACTCAAAGGTTATTGC 1392
Query 1441 CCATTGACTCCAAAAGAAGTTGGGATATTGCTAACAGCTCTTGGATATTCATCAGACACA 1500
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 1393 CCATTGACTCCAAAAGAAGTTGGAATCTTGCTAACAGCTCTTGGATATTCATCAAACACA 1452
Query 1501 CCGGTATATATAGCTGCTGGTGAGATTTACGGTGGTGAGTCTCGGTTAGCCGATTTACGC 1560
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 CCGATATATATAGCTGCTGGTGAGATTTACGGTGGTGAGTCTCGGTTAGCCGATTTACGC 1512
Query 1561 TCTCGGTTCTCCATGTTAATGAGTAAGGAAAAATTGGCAACAAGAGAAGAGCTTAAGACT 1620
||||| ||||||||||||| |||||||||||| |||||||| || |||||||||||| ||
Sbjct 1513 TCTCGTTTCTCCATGTTAACGAGTAAGGAAAATTTGGCAACTAGCGAAGAGCTTAAGCCT 1572
Query 1621 TTTATGAACCACTCAACTCAAATGGCTGCACTTGACTACATTGTTTCCATCGAAAGCGAT 1680
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct 1573 TTTATGAACCACTCAACTCAAATGGCTGCACTTGATTACATTGTTTCTGTGGAAAGCGAC 1632
Query 1681 GTTTTTATTCCGTCGTATAGTGGAAACATGGCGAGAGCTGTTGAAGGGCATCGTCGGTTT 1740
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 1633 GTTTTTATTCCGTCATATAGCGGAAACATGGCAAGAGCTGTTGAAGGGCATCGTCGGTAT 1692
Query 1741 CTTGGTCACCGGAAAACTATCTCTCCGGACAGGAAAGCCATTGTAAGGTTGGTAGACAGA 1800
||||||||||| ||||||||||||||||||||||||| |||||| |||||| |||| |||
Sbjct 1693 CTTGGTCACCGAAAAACTATCTCTCCGGACAGGAAAGGCATTGTGAGGTTGATAGATAGA 1752
Query 1801 ATTGGAAGAGGAGCTGAGAAAGATAACCGAAAAGTGTATGAAAGAATCAAT-GAGATTCA 1859
|||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||
Sbjct 1753 ATTGGAAGAGGAGCTGAGAAAGATAACCGAAAAGTGTATGAACGAATC-ATAGATATTCA 1811
Query 1860 CAAAACCCGACAAGGATCACCGAGGAGGAGAAAAGGGCCAGCTTCTGGAACAAAAGGTTT 1919
|||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1812 CAAAACCCGACAAGGATCGCCGAAGAGGAGAAAAGGGCCAGTTTCTGGAACAAAAGGTTT 1871
Query 1920 GGAGAGACATCGTTCTGAAGAATCCTTCTACGAGAACCCATTACCAGACTGTCTCTGCCA 1979
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1872 GGAGAGACATCGTTCTGAAGAATCCTTCTACGAGAACCCATTACCGGAGTGCCTCTGCCA 1931
Query 1980 GAGAGACCCAAGTAAAGCGAGATAATAGACATGACACTTGGAATTT--CAAGTAAATTTA 2037
|||||||||||||||||||||||||| ||||||| ||||| ||||| || | |||||||
Sbjct 1932 GAGAGACCCAAGTAAAGCGAGATAATGGACATGAAACTTGAAATTTTTCATGCAAATTTA 1991
Query 2038 GCATTGGGGATAAGTTTCAATGATAGTAATAGGTATATTATA 2079
||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1992 GCATTGGAGATAAGTTTCAATGATAGTTATAGGCATATTATA 2033
Score = 91.6 bits (49), Expect = 2e-17
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1 GTGACCCTTCTCTAACCTTTTTAGCTTCTTAACTCTTAAAATAGAAAACAAG 52
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGACCCTTCTCTTACCTTTTTAGCTTCTTAACTCTTAAAATAGAAAACAAG 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5