BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22470.1

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg313132 jgi|Araly1|313132|fgenesh1_pm.C_scaffold_1001912           691    0.0  


> Ahg313132 jgi|Araly1|313132|fgenesh1_pm.C_scaffold_1001912
Length=561

 Score =  691 bits (374),  Expect = 0.0
 Identities = 418/439 (95%), Gaps = 4/439 (1%)
 Strand=Plus/Plus

Query  43   ATGGCAAACGTTTTCCTCATCAGTAGCAGAAACAGAAGATCAATGCGGACAACAACAGAA  102
            |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| 
Sbjct  1    ATGGCAAACGTTTTCCTCATCAATAGCAGAAACAGAAGATCAATGCGAACAACAACAGAG  60

Query  103  TCAAAACCCAAGAATCTTACGGTGAAGAGATCAGATTCATCTTCAGACTATAACTACTCA  162
            ||||||||||||||| ||||||| |||||||||||||||||||||||||| || ||||||
Sbjct  61   TCAAAACCCAAGAATATTACGGTAAAGAGATCAGATTCATCTTCAGACTACAAGTACTCA  120

Query  163  TGCAAGAAACATCCGAAGCACAGACAATCTCCTGGAATATGTTCCCTTTGTCTTAACGAG  222
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  121  TGCAAGAAACATCCAAAGCAAAGACAATCTCCTGGAATATGTTCCCTTTGTCTCAACGAG  180

Query  223  AGTCTCTCCAAGTTGTCTAGTGAGTTT-TATGAC-TATAGCTCAAGCATGAGCTCGTCTT  280
            ||||||||||||||||||||||| ||| |||||| || || |||||||||||||||||||
Sbjct  181  AGTCTCTCCAAGTTGTCTAGTGA-TTTCTATGACTTA-AGTTCAAGCATGAGCTCGTCTT  238

Query  281  CTTTGGCTAAAACGATGTCGTCTTGCTCCTCCGCTTCTTCGGAATCAGAATCAGATTTTT  340
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct  239  CTTTGGCTAAAACGATGTCGTCTTGCTCCTCCGCCTCTTCGGAATCAGAATCAGATTATT  298

Query  341  CTTCGACGGCGATATCTTCTTATTACTCTTCTGTCTCCTCTTGTTTATCTCCTCTGCAAC  400
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  CTTCGACGGCTATATCTTCTTATTACTCTTCTGTCTCCTCTTGTTTATCTCCTCTGCAAC  358

Query  401  ATAGATACAGTGAGATCGTCGTTAATAAGAAGAAAAAGAAACATGTCAAGAAACAAAGCT  460
            ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct  359  ATAGATACAGTGAGATCGTTGTTAATAAGAAGAAAAAGAAGCATGTCAAAAAACAAAGCT  418

Query  461  TCCTCTCTAGATTATTTCT  479
            |||||||||||||||||||
Sbjct  419  TCCTCTCTAGATTATTTCT  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19573817157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5