BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22480.1
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472488 jgi|Araly1|472488|fgenesh2_kg.1__2442__AT1G22480.1 881 0.0
> Ahg472488 jgi|Araly1|472488|fgenesh2_kg.1__2442__AT1G22480.1
Length=801
Score = 881 bits (477), Expect = 0.0
Identities = 657/738 (89%), Gaps = 35/738 (5%)
Strand=Plus/Plus
Query 156 ACAAACTAATTAGGAGTTATCGTAAG-AAAG-AAATAAGAGTTATCCT-A-AGA-T-G-T 208
|||||||||||||||||||||||||| |||| ||| || ||||||||| | ||| | |
Sbjct 82 ACAAACTAATTAGGAGTTATCGTAAGAAAAGAAAAAAAAAGTTATCCTAAGAGAGTCGAC 141
Query 209 TAACTCGACT--AAATCAACACACCCC--T-TATCTATATATATATCTGCATAAGTCACA 263
||| | ||| || | ||||| |||| | || |||||||||||| ||||| ||||||
Sbjct 142 TAAATTAACTCCAATTAAACAC-CCCCTATCTAGCTATATATATATATGCAT--GTCACA 198
Query 264 AGAAGTT-TCataaaatagtaattcccttaataaaaatagtatatataaaacata-aaga 321
||||||| ||||||||||||||||||| | | ||| | | || | || ||| | |
Sbjct 199 AGAAGTTATCATAAAATAGTAATTCCC-T--T----ATA-T-T-TA-ACAA-ATAGTATA 246
Query 322 aaaaaatatGAGCACACTTCTTGGTTGTCTTGTCCTCATA---TTCTCTATGGTCGCACA 378
||| |||||||||| |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 247 AAACAATATGAGCAGACTTCTTGGTTGCCTTGTCCTCATATTCTTCTCTATGGTCGCACC 306
Query 379 GGCCTCATCCGCCAGTCTTACGGTGAACTGGTCCCTTGGCACCGACTACACTCCGCTCAC 438
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 307 TGCCTCATCCGCCACTCTTACGGTGAACTGGTCCCTTGGCACCGACTACACTCCGCTCGC 366
Query 439 CACTGGAAAGACCTTCTCTGTCGGCGATACCATAGTGTTCAATTATGGTGCGGGTCACAC 498
|||||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||
Sbjct 367 CACTGGAAAGTCCTTCGCTGTCGGCGATACCATCGTGTTCAACTATGGTGCGGGTCACAC 426
Query 499 GGTGGATGAAGTGAGCGAGAACGACTACAAGAGTTGCACTCTAGGGAACTCCATTACGTC 558
|||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 427 GGTGGACGAAGTGAGCGAGAATGACTACAAGAGTTGCACTTTAGGGAACTCCATTACGTC 486
Query 559 CGACAGCAGCGGAACCACGACCATAGCTCTCACGACCACTGGTCCTCGCTACTTCATCTG 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 487 CGACAGCAGCGGAACCACGACCATAGCTCTCACGACCACTGGTCCTCGCTACTTCATATG 546
Query 619 TGGAATCCCCGGCCATTGCGCTGCCGGTATGAAGCTCGCAGTCACCGTCGCGTCGAACTC 678
||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 547 TGGAATCCCCGGCCATTGCGCCGCCGGTATGAAGCTGGCAGTCACCGTCGCGTCGGCCTC 606
Query 679 TTCAAACGGTGTAGCTGGTGGCACCACTACACCAACCCCATTCACCGGAGGTGGTGGTGG 738
|||||||| ||||| |||||||||||| ||||||||||| |||||||||||| |||||
Sbjct 607 TTCAAACGTTGTAGGTGGTGGCACCACCACACCAACCCCTTTCACCGGAGGTAGTGGT-- 664
Query 739 TTACAATCCCACGACCACACAGGCCATTCCTTGTGCGGCTTGGGCCGTGTCCTGTCCATT 798
| |||| |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 665 T-ACAACCCCACGACCACACAGGCCATTCCTTGTGGGGCTTGGACCGTGTCTTGTCCATT 723
Query 799 ACGGGCTTTGGTTGCTACTTGGGCCGTTGTTTTTTATGCTTTGGCTTTGTCTTAGTTGAA 858
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 724 AGGGGCTTTGGTTGCTACTTGGGCCGTTGTTTTTTATGCTTTGTCTTTGTCTTAGTTGAA 783
Query 859 ATTGTGTGGTCTGTATGT 876
||| |||||| | |||||
Sbjct 784 ATTTTGTGGTGTATATGT 801
Score = 110 bits (59), Expect = 3e-23
Identities = 65/68 (96%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 14 GGAAGTTCCACCTGCTTTTTGGTTTAGTCCATATATTTAATCATTGTGAAGCTATGACGA 73
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 GGAAGTTCCACCTGCTTTTTGGTTTAGTCCATATATTTAATCATTGTGAAGCGGTGACGA 60
Query 74 TAACTGAT 81
|||||||
Sbjct 61 AAACTGAT 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5