BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22490.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335492 jgi|Araly1|335492|fgenesh1_pg.C_scaffold_1002057 1341 0.0
> Ahg335492 jgi|Araly1|335492|fgenesh1_pg.C_scaffold_1002057
Length=939
Score = 1341 bits (726), Expect = 0.0
Identities = 870/939 (93%), Gaps = 12/939 (1%)
Strand=Plus/Plus
Query 104 ATGCCCTTAGAGGCTGTCGTATACCCGCAAGATCCATTCGGATATCTCTCCAATTGCAAA 163
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ATGCCCTTAGAGGCTGTCGTATACCCGCAAGATCCATTCGGATATCTTTCTAATTGCAAA 60
Query 164 GATTTTATGTTCCACGACTTATACTCTCAAGAAGAGTTCGTAGCTCAAGATACGAAGAAC 223
||||| |||||||||||||| | ||||||||||||| || ||||||||||||||||||||
Sbjct 61 GATTTCATGTTCCACGACTTGTGCTCTCAAGAAGAGGTCTTAGCTCAAGATACGAAGAAC 120
Query 224 AACATTGATAAGTTAGGGCATGAACAGAGCTTTGTGGAACAAGGTAAGGAGGACGATCAT 283
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |
Sbjct 121 AACATTGATAAGTTAGGGCAAGAACAGAGATTTGTGGAACAAGGTAAGGAGGAGGATCGT 180
Query 284 CAATGGCGAGACTATCATCAGTATCCTTTGTTGATCCCTTCGTTGGGAGAAGAGCTTGGT 343
||||||||| ||||| ||||||| ||||| || ||||| ||||||| |||||||||||||
Sbjct 181 CAATGGCGAAACTATAATCAGTACCCTTTATTAATCCCATCGTTGGAAGAAGAGCTTGGT 240
Query 344 CTTACCGCCATTGATGTGGAGAGTCATCCTCCTCCACAGCACCggaggaagaggaggaga 403
||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 241 CTTCCCGCCATTGATGTGGAGAATCATCCTCCTCCACAGCAGCGGAGGAAGAGGAGGAGA 300
Query 404 acgagaaactgcaagaacaaggaagagatcgagaaccagagaaTGACTCACATCGCCGTC 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGAGAAACTGCAAGAACAAGGAAGAGATCGAGAACCAGAGAATGACTCACATCGCCGTC 360
Query 464 GAGAGAAATCGCCGGAAACAGATGAACGAGTATCTGGCTGTGCTCCGTTCTCTAATGCCG 523
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 361 GAGAGAAATCGCCGGAAACAGATGAACGAGTACCTCGCTGTGCTCCGTTCTCTAATGCCG 420
Query 524 TCGTCGTATGCTCAAAGAGGAGATCAAGCGTCGATAGTAGGAGGAGCTATAAACTACGTG 583
| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 421 TTGTCGTATGCTCAAAGAGGAGATCAAGCGTCGATAGTAGGAGGAGCTATTAACTTCGTG 480
Query 584 AAGGAGTTAGAGCATATTTTACAATCTATGGAGCCGAAGAGAACTAGGAC----TC-A-- 636
||||||||||||||||| ||||||||||||| ||| |||||||| ||||| || |
Sbjct 481 AAGGAGTTAGAGCATATCTTACAATCTATGGGGCCTAAGAGAACCAGGACCACGTCCACG 540
Query 637 -----TGATCCCAAAGGAGACAAGACTAGCACTAGCTCGTTAGTGGGTCCATTCACAGAT 691
||||||| |||||| ||| ||||||||||||||||| |||||||| ||| |||||
Sbjct 541 ACACATGATCCCGAAGGAGCCAATACTAGCACTAGCTCGTTGGTGGGTCCCTTCTCAGAT 600
Query 692 TTTTTCAGCTTCCCACAATATTCTACAAAGTCATCATCAGATGTACCGGAAAGCTCATCT 751
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 TTTTTCAGCTTCCCTCAATATTCTACAAAGTCATCATCAGAAGTACCGGAAAGCTCATCT 660
Query 752 TCACCGGCGGAGATAGAGGTTACGGTGGCAGAAAGCCATGCGAACATCAAGATAATGACG 811
||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| || |
Sbjct 661 TCACCAGCGGAGATAGAGGTGACGGTGGCAGAAAGCCACGCGAACATCAAGATACTGGTG 720
Query 812 AAGAAGAAACCGAGGCAGCTTCTTAAGCTCATAACTTCTTTACAAAGCCTAAGGCTCACT 871
|||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||
Sbjct 721 AAGAAGAAACCGAGGCAGCTTCTTAAACTTATAGCTTCTTTACAAAGTCTAAGGCTCACT 780
Query 872 CTTCTTCATCTCAATGTCACCACTCTCCACAACTCCATTCTCTACTCCATCAGCGTCAGG 931
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTCTTCATCTTAATGTCACCACTCTCCACAACTCCATTCTCTACTCCATCAGCGTCAGG 840
Query 932 GTTGAAGAAGGAAGCCAACTGAATACCGTGGACGACATTGCAACAGCTTTGAATCAAACC 991
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 841 GTTGAAGAAGGTAGCCAGTTGAATACCGTGGACGACATTGCAACAGCTTTGAATCATACC 900
Query 992 ATAAGGAGGATTCAAGAAGAGACATAATTCAGCAAATAG 1030
|||||||||||||| |||||| | || ||||||||||||
Sbjct 901 ATAAGGAGGATTCAGGAAGAGTCGTATTTCAGCAAATAG 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5