BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22500.1 Length=1425 Score E Sequences producing significant alignments: (Bits) Value Ahg472490 jgi|Araly1|472490|fgenesh2_kg.1__2444__AT1G22500.1 1557 0.0 > Ahg472490 jgi|Araly1|472490|fgenesh2_kg.1__2444__AT1G22500.1 Length=1285 Score = 1557 bits (843), Expect = 0.0 Identities = 1125/1261 (89%), Gaps = 19/1261 (2%) Strand=Plus/Plus Query 1 TATTTTATAAAGCTCCTTCACCGGTAAAAGCCTTGGTCCTCATGAAACCGGGAAGCCCAA 60 ||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||| Sbjct 1 TATTTTATAAAGCTCTTTCACCGG-CAAA---TTGGTCCTCATGAAACCGGGAAGTCCAA 56 Query 61 GTACTTACTTCCACCATCAAATCGTCAAACCATTTGCAACCATCGATGGTGGTCATGTCA 120 |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 57 CAACTTACCTCCACCGTCAAATCGTTAAACCATTTGCAACCATCGATGGTGGTCATGTCA 116 Query 121 CGAGTAAGCTTCTACTCTTCTTTCTTGCTACTACTGTTAGAGGTCGTTGTCGCT-AGCAG 179 || |||||||||||||||| ||| | |||||||||||| || ||| ||||||| | | Sbjct 117 CGTTTAAGCTTCTACTCTTCCTTCGTCCTACTACTGTTACAGCTCGCTGTCGCTCAA-AC 175 Query 180 CGAGTTTG--A-TGATGAAGGAAGAACATCGT-TCAGTCCAACCACGGCTATAATCATGA 235 |||||||| | ||||| |||||| ||| | ||||||||| || || |||| |||||| Sbjct 176 CGAGTTTGCTAATGATGGAGGAAGGACAAA-TATCAGTCCAAGCATGGTTATACTCATGA 234 Query 236 TCGTACTCGTTAGTGTTTTCTTCGCACTTGGATGTATCTCCGTCTACATGAGGAGGTGTC 295 ||||||||||||||||||| |||| | |||||||||||||||||| |||| |||| ||| Sbjct 235 TCGTACTCGTTAGTGTTTTTTTCGGAATTGGATGTATCTCCGTCTCCATGCGGAGTTGTA 294 Query 296 TCCAGC-ACGCT-CTGGGGATGGACAGCGGTGGTGGTCCA-GGAAACTGGCTTAACGTGA 352 || ||| | ||| | ||| ||| | || | || | ||| |||||||||| |||||||| Sbjct 295 TCGAGCGA-GCTACAGGGT-TGGGCGGCTATAGTCG-CCAAGGAAACTGGCGTAACGTGA 351 Query 353 GGCAAACGACGGAGCCTGGGCTAGACGCGTCTGTTATAGAAACGTTTCCAACGTTTCCTT 412 |||||||||||| || |||||| |||||||||||||||||||||||||||||||||| || Sbjct 352 GGCAAACGACGGCGCGTGGGCTCGACGCGTCTGTTATAGAAACGTTTCCAACGTTTCGTT 411 Query 413 ACTCTACAGTGAAGACGTTGAGGATCGGTAAAGAAGCTTTGGAGTGTCCCGTTTGTCTCA 472 ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 412 ACTCTACCGTGAAGACGTTGAGGATCGGCAAAGAAGCTTTGGAGTGTCCCGTTTGCCTCA 471 Query 473 ACGAGTTCGAGGACGACGAAACGCTGCGTTTGATTCCTCAGTGTTGTCACGTGTTTCATC 532 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 472 ACGAGTTCGAGGACGACGAATCGCTGCGTTTGATTCCTCAGTGTTGTCATGTGTTTCATC 531 Query 533 CTGGTTGCATTGATGCCTGGCTCCGTTCTCAGACCACATGTCCTCTTTGCCGAGCCAATC 592 ||||||||||||| || |||||||||||||| || ||||||||||||||||| ||||||| Sbjct 532 CTGGTTGCATTGAGGCTTGGCTCCGTTCTCAAACAACATGTCCTCTTTGCCGTGCCAATC 591 Query 593 TCGTTCCTGTACCGGGTGAGTCTGTTTCTTCGGAGATACCCGGTTTAGCTAGAGAAACCG 652 | ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 592 TAGTTCCTGTACCAGGTGAATCTGTTTCTTTGGAGATACCCGGTTTAGCTAGAGAAACCG 651 Query 653 GTCAGAACTCTCTCAGAACGCCGATTGATGATAACCGGAAAAGGGTTTTAACTTCACCTG 712 |||||| ||||||| | |||||||||||||||||| ||||||||||||| ||||||| | Sbjct 652 GTCAGAGCTCTCTCGGGACGCCGATTGATGATAACGGGAAAAGGGTTTTGGCTTCACCGG 711 Query 713 ACGAGCGGTTGATTGACTCAGTGGCTTGGACGGGTAACCAAAGCATGCCACGTAAATCCA 772 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 712 ACGAGCGGTTGATTGACTCTGTGGCTTGGACGGGTAACCAAAGCATGCCACGTAAGTCCA 771 Query 773 TGTCTACAGGTTGGAAACTAGCTGAATTGTACAGCCCGGCTAGTTCACCGGGCCAACCGG 832 |||||||||||||||||||||||| ||||| ||||||| ||||||| || || ||||| | Sbjct 772 TGTCTACAGGTTGGAAACTAGCTGGATTGTTCAGCCCGACTAGTTCTCCCGGTCAACCAG 831 Query 833 AGGAGAATCTCGACCGGTATACGCTGAGGTTACCACAAGAGATACATGACCAGCTTGTGA 892 |||||||||||||||||| ||| |||||||| |||||||||||||| || ||||| |||| Sbjct 832 AGGAGAATCTCGACCGGTTTACACTGAGGTTTCCACAAGAGATACACGATCAGCTCGTGA 891 Query 893 ACTCCAGCCTG-GGAAAGCAAGGGTCAAAAGGCCAACTGGCCTTACCTCAAGAAAGGAGC 951 | ||||||| | ||||| ||||||||||||| ||| |||| |||||||||| ||||||| Sbjct 892 AATCCAGCC-GAGGAAACCAAGGGTCAAAAGACCATGTGGCGTTACCTCAAGCAAGGAGC 950 Query 952 TCGGTTAGAGGGTTCAGAACCGGAAGCCTAGGGACTGAAAAGAACTATTTCTACTTTGAA 1011 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 951 TCGGTTAGAGGGTACAGAACCAAAAGCCTAGGGACTGAAAAGAACTATTTCTACTCTGAA 1010 Query 1012 CGGTTTGATCAAGACGGTCGGTTGGACCGGAGACCATTTTCTATAACTCCTCCATACCAT 1071 |||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||| Sbjct 1011 CGGTTTGATCAAGACGGTCGATTAGACCGAAGACCATTTTCTATAACTCCTCCGTACCAT 1070 Query 1072 ACCCGGTCGATACAGTCTCCGGATGAGATTATCAACGCTAGTGGTAATTATCAGGATCGT 1131 ||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||| Sbjct 1071 ACCCGGTCGATCCAGTCTCCGGATGAGATTATCAACGGTAGCGGTAATTATCAGGAGCGT 1130 Query 1132 GCTGGTGCACCTAAAGGTTTGCTTCTAGCAATAAGGTCACCGTTTGATCGGTTATTTACT 1191 |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || Sbjct 1131 CCTGGTGCACCTAAAGGTTTGCTTCTAGCGATAAGGTCACCCTTTGATCGGTTATTCACC 1190 Query 1192 GGGAAGAAAAATGCCGGTGAGCGTTCGTACCTTCAATCCGGCGATGCGAGCCCTGTCTAG 1251 |||||| |||| |||||| ||||||||||| | |||| ||||||| ||||||| |||| Sbjct 1191 AAGAAGAACAATGTCGGTGAACGTTCGTACCTGCGATCCAGCGATGCCAGCCCTGCCTAG 1250 Query 1252 G 1252 | Sbjct 1251 G 1251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53288252755 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5