BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22500.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472490 jgi|Araly1|472490|fgenesh2_kg.1__2444__AT1G22500.1 1557 0.0
> Ahg472490 jgi|Araly1|472490|fgenesh2_kg.1__2444__AT1G22500.1
Length=1285
Score = 1557 bits (843), Expect = 0.0
Identities = 1125/1261 (89%), Gaps = 19/1261 (2%)
Strand=Plus/Plus
Query 1 TATTTTATAAAGCTCCTTCACCGGTAAAAGCCTTGGTCCTCATGAAACCGGGAAGCCCAA 60
||||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||
Sbjct 1 TATTTTATAAAGCTCTTTCACCGG-CAAA---TTGGTCCTCATGAAACCGGGAAGTCCAA 56
Query 61 GTACTTACTTCCACCATCAAATCGTCAAACCATTTGCAACCATCGATGGTGGTCATGTCA 120
|||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 57 CAACTTACCTCCACCGTCAAATCGTTAAACCATTTGCAACCATCGATGGTGGTCATGTCA 116
Query 121 CGAGTAAGCTTCTACTCTTCTTTCTTGCTACTACTGTTAGAGGTCGTTGTCGCT-AGCAG 179
|| |||||||||||||||| ||| | |||||||||||| || ||| ||||||| | |
Sbjct 117 CGTTTAAGCTTCTACTCTTCCTTCGTCCTACTACTGTTACAGCTCGCTGTCGCTCAA-AC 175
Query 180 CGAGTTTG--A-TGATGAAGGAAGAACATCGT-TCAGTCCAACCACGGCTATAATCATGA 235
|||||||| | ||||| |||||| ||| | ||||||||| || || |||| ||||||
Sbjct 176 CGAGTTTGCTAATGATGGAGGAAGGACAAA-TATCAGTCCAAGCATGGTTATACTCATGA 234
Query 236 TCGTACTCGTTAGTGTTTTCTTCGCACTTGGATGTATCTCCGTCTACATGAGGAGGTGTC 295
||||||||||||||||||| |||| | |||||||||||||||||| |||| |||| |||
Sbjct 235 TCGTACTCGTTAGTGTTTTTTTCGGAATTGGATGTATCTCCGTCTCCATGCGGAGTTGTA 294
Query 296 TCCAGC-ACGCT-CTGGGGATGGACAGCGGTGGTGGTCCA-GGAAACTGGCTTAACGTGA 352
|| ||| | ||| | ||| ||| | || | || | ||| |||||||||| ||||||||
Sbjct 295 TCGAGCGA-GCTACAGGGT-TGGGCGGCTATAGTCG-CCAAGGAAACTGGCGTAACGTGA 351
Query 353 GGCAAACGACGGAGCCTGGGCTAGACGCGTCTGTTATAGAAACGTTTCCAACGTTTCCTT 412
|||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 352 GGCAAACGACGGCGCGTGGGCTCGACGCGTCTGTTATAGAAACGTTTCCAACGTTTCGTT 411
Query 413 ACTCTACAGTGAAGACGTTGAGGATCGGTAAAGAAGCTTTGGAGTGTCCCGTTTGTCTCA 472
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 412 ACTCTACCGTGAAGACGTTGAGGATCGGCAAAGAAGCTTTGGAGTGTCCCGTTTGCCTCA 471
Query 473 ACGAGTTCGAGGACGACGAAACGCTGCGTTTGATTCCTCAGTGTTGTCACGTGTTTCATC 532
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 472 ACGAGTTCGAGGACGACGAATCGCTGCGTTTGATTCCTCAGTGTTGTCATGTGTTTCATC 531
Query 533 CTGGTTGCATTGATGCCTGGCTCCGTTCTCAGACCACATGTCCTCTTTGCCGAGCCAATC 592
||||||||||||| || |||||||||||||| || ||||||||||||||||| |||||||
Sbjct 532 CTGGTTGCATTGAGGCTTGGCTCCGTTCTCAAACAACATGTCCTCTTTGCCGTGCCAATC 591
Query 593 TCGTTCCTGTACCGGGTGAGTCTGTTTCTTCGGAGATACCCGGTTTAGCTAGAGAAACCG 652
| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 592 TAGTTCCTGTACCAGGTGAATCTGTTTCTTTGGAGATACCCGGTTTAGCTAGAGAAACCG 651
Query 653 GTCAGAACTCTCTCAGAACGCCGATTGATGATAACCGGAAAAGGGTTTTAACTTCACCTG 712
|||||| ||||||| | |||||||||||||||||| ||||||||||||| ||||||| |
Sbjct 652 GTCAGAGCTCTCTCGGGACGCCGATTGATGATAACGGGAAAAGGGTTTTGGCTTCACCGG 711
Query 713 ACGAGCGGTTGATTGACTCAGTGGCTTGGACGGGTAACCAAAGCATGCCACGTAAATCCA 772
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 712 ACGAGCGGTTGATTGACTCTGTGGCTTGGACGGGTAACCAAAGCATGCCACGTAAGTCCA 771
Query 773 TGTCTACAGGTTGGAAACTAGCTGAATTGTACAGCCCGGCTAGTTCACCGGGCCAACCGG 832
|||||||||||||||||||||||| ||||| ||||||| ||||||| || || ||||| |
Sbjct 772 TGTCTACAGGTTGGAAACTAGCTGGATTGTTCAGCCCGACTAGTTCTCCCGGTCAACCAG 831
Query 833 AGGAGAATCTCGACCGGTATACGCTGAGGTTACCACAAGAGATACATGACCAGCTTGTGA 892
|||||||||||||||||| ||| |||||||| |||||||||||||| || ||||| ||||
Sbjct 832 AGGAGAATCTCGACCGGTTTACACTGAGGTTTCCACAAGAGATACACGATCAGCTCGTGA 891
Query 893 ACTCCAGCCTG-GGAAAGCAAGGGTCAAAAGGCCAACTGGCCTTACCTCAAGAAAGGAGC 951
| ||||||| | ||||| ||||||||||||| ||| |||| |||||||||| |||||||
Sbjct 892 AATCCAGCC-GAGGAAACCAAGGGTCAAAAGACCATGTGGCGTTACCTCAAGCAAGGAGC 950
Query 952 TCGGTTAGAGGGTTCAGAACCGGAAGCCTAGGGACTGAAAAGAACTATTTCTACTTTGAA 1011
||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 951 TCGGTTAGAGGGTACAGAACCAAAAGCCTAGGGACTGAAAAGAACTATTTCTACTCTGAA 1010
Query 1012 CGGTTTGATCAAGACGGTCGGTTGGACCGGAGACCATTTTCTATAACTCCTCCATACCAT 1071
|||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 1011 CGGTTTGATCAAGACGGTCGATTAGACCGAAGACCATTTTCTATAACTCCTCCGTACCAT 1070
Query 1072 ACCCGGTCGATACAGTCTCCGGATGAGATTATCAACGCTAGTGGTAATTATCAGGATCGT 1131
||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 1071 ACCCGGTCGATCCAGTCTCCGGATGAGATTATCAACGGTAGCGGTAATTATCAGGAGCGT 1130
Query 1132 GCTGGTGCACCTAAAGGTTTGCTTCTAGCAATAAGGTCACCGTTTGATCGGTTATTTACT 1191
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 1131 CCTGGTGCACCTAAAGGTTTGCTTCTAGCGATAAGGTCACCCTTTGATCGGTTATTCACC 1190
Query 1192 GGGAAGAAAAATGCCGGTGAGCGTTCGTACCTTCAATCCGGCGATGCGAGCCCTGTCTAG 1251
|||||| |||| |||||| ||||||||||| | |||| ||||||| ||||||| ||||
Sbjct 1191 AAGAAGAACAATGTCGGTGAACGTTCGTACCTGCGATCCAGCGATGCCAGCCCTGCCTAG 1250
Query 1252 G 1252
|
Sbjct 1251 G 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5