BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22510.2
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921275 jgi|Araly1|921275|scaffold_102556.1 747 0.0
Ahg926580 jgi|Araly1|926580|scaffold_202141.1 436 1e-121
> Ahg921275 jgi|Araly1|921275|scaffold_102556.1
Length=596
Score = 747 bits (404), Expect = 0.0
Identities = 462/490 (94%), Gaps = 3/490 (1%)
Strand=Plus/Plus
Query 383 CGGGAACTGCATTATGCTAGTTTGGAGGCATGGATCTACATTACGGCCATGCAAATGTCC 442
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 110 CGGAAACTGCATTATGCTTGTTTGGAGGCATGGATCTACATTACGGCCATGCAAATGTCC 169
Query 443 CTTGTGTCGTCGTCCGATAAGTTTGTTAGTTCCTTCTGAGGAAACAGTGAGAAGTCGGAA 502
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 170 CTTGTGTCGTCGTCCGATTAGTTTACTAGTTCCTTCTGAGGAAACAGTGAGAAGTCGGAA 229
Query 503 TGATGCTACAGTTTCTGAGGTTCTTCATGATGTTGAAACTTACAACCGTGTCTTTGGTGG 562
||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 230 TGATGCTACGGTTTCCGAGGTTCTTCACGATGTTGAAACTTACAACCGAGTCTTTGGTGG 289
Query 563 ACAGTCAAGTGGCCTTATTCAGAGGATGCAAGACCTTCCCTTCTTACTCCGAAGGTTGTT 622
|||||||||||| || |||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 290 ACAGTCAAGTGGACTAATTC--AGGATGCAAGATCTTCCCTTCTTACTCCGAA-GTTGTT 346
Query 623 GCGAGAAATGATGGATCCACAAAGAACGCTTCCACTCGTCATCAGAGCTCGTGTTTATAT 682
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 347 GCGAGAAATGATGGATCCACGAAGAACGCTTCCACTCGTCATCAGAGCTCGTGTTTATAT 406
Query 683 TGCGTTGATACTCAGTGCGATTTACATAATCAGCCCAATAGATATCATTCCGGAAGGAGT 742
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 407 TGCGTTGATACTCAGTGCGATTTACATAATCAGCCCAATAGATATCATTCCTGAAGGAGT 466
Query 743 CTTGGGGGTTATCGGTTTACTAGATGATCTTCTCATAGCCCTGATTTGTTTCCTCCATGT 802
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 467 CTTGGGGGTTATCGGTTTACTAGATGATCTACTTATAGCCCTGATTTGTTTCCTCCATGT 526
Query 803 CGCTGCTCTCTACCGATCCGTTCTCTATTCCCGTCATGGTGGTTCGTGAACCTCTTTGAA 862
||||| |||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 527 GGCTGCCCTCTACCGATCCGTTCTCTATTTCCGTCATGGTGGTTCGTGAATGGCTTCGAA 586
Query 863 GTTTTCACAT 872
|||| ||||
Sbjct 587 ATTTTTACAT 596
Score = 174 bits (94), Expect = 1e-42
Identities = 102/106 (96%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 222 AGACGAAGACGACAATGAATGCGCCACCGGAGAACGAACTTTGTTCGATATGCCATGGCC 281
||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 7 AGAGGAAGACGACGATGAATGCGCCACCGGAGAACGAAGTTTGTTCGATATGCCATGGCC 66
Query 282 ACTTCAACGCTCCTTGCCAATCCAATTGCTCTCACTGGTTCTGCGG 327
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 67 ACTTTAACGCTCCTTGCCAATCCAATTGCTCTCACTGGTTCTGCGG 112
> Ahg926580 jgi|Araly1|926580|scaffold_202141.1
Length=598
Score = 436 bits (236), Expect = 1e-121
Identities = 400/478 (84%), Gaps = 16/478 (3%)
Strand=Plus/Plus
Query 383 CGGGAACTGCATTATGCTA-GTTTGGAGGCATGGATCTACATTACGGCCATGCAAATGTC 441
||| || |||||||||| | || |||||||||||||||||||| | |||||| ||||| |
Sbjct 110 CGGAAATTGCATTATGC-AGGTGTGGAGGCATGGATCTACATTGCAGCCATGTAAATG-C 167
Query 442 CC-TTGTGTCGTCGTCCGATAAGTTTGTTAGTTCCTTCTGAGGAAACAGTGAGAAG-TCG 499
|| |||||||||||||| || |||||||| |||||||| ||||| ||| | || || ||
Sbjct 168 CCTTTGTGTCGTCGTCCTATTAGTTTGTTGGTTCCTTCAGAGGACACAATCAG-AGACCG 226
Query 500 GAATGA-TGCTACAGTTTCTGAGGTTCTTCATGATGTTGAAACTTACAACCGTGTCTTTG 558
|||||| | ||||||| | ||||||||| | || ||||||| || ||||| ||||||
Sbjct 227 GAATGACAG-TACAGTTGCGGAGGTTCTTGGTAATCTTGAAACGTATAACCGACTCTTTG 285
Query 559 GTGGACAG-TCAAGTGGCCTTA-TTCAGAGGATGCAAGACCTTCCCTTCTTACTCCGAAG 616
| || | | |||| | | ||| ||||||||||||||||||||||||||||||| || ||
Sbjct 286 GCGGGC-GTTCAACTAG-TTTACTTCAGAGGATGCAAGACCTTCCCTTCTTACTACGGAG 343
Query 617 GTTGTTGCGAGAAATGATGGATCCACAAAGAACGCTTCCACTCGTCATCAGAGCTCGTGT 676
||||||||| |||||||||||||| ||||||||||||||||| || || || ||||| ||
Sbjct 344 GTTGTTGCGGGAAATGATGGATCCGCAAAGAACGCTTCCACTTGTGATTAGGGCTCGGGT 403
Query 677 TTATATTGCGTTGATACTCAGTGCGATTTACATAATCAGCCCAATAGATATCATTCCGGA 736
|||||| || |||| || ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 404 TTATATCGCAATGATTCTGAGTGCTATTTACATAATCAGTCCAATAGATATCATTCCAGA 463
Query 737 AGGAGTCTTGGGGGTTA-TCGGTTTACTAGATGATCTTCTCATAGCCCTGATTTG-TTTC 794
|||||| |||||| | | ||||||| || |||||||| |||||||| |||||| | ||||
Sbjct 464 AGGAGTTTTGGGGAT-AGTCGGTTTGCTTGATGATCTACTCATAGCACTGATT-GCTTTC 521
Query 795 CTCCATGTCGCTGCTCTCTACCGATCCGTTCTCTATTCCCGTCATGGTGGTTCGTGAA 852
|||||||| |||||| | ||||| || |||||||||| |||||||| ||||| ||||
Sbjct 522 CTCCATGTTGCTGCTTTGTACCGCTCGGTTCTCTATTTCCGTCATGCCGGTTCATGAA 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5